RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 CCDC112Q8NEF3 446 aa18.32■□□□□ 0.52
NUP88-207ENST00000573584 PLBD2Q8NHP8 589 aa18.32■□□□□ 0.52
NUP88-207ENST00000573584 PALLDQ8WX93 1383 aa18.31■□□□□ 0.52
NUP88-207ENST00000573584 A0A087WWV3 80 aa18.31■□□□□ 0.52
NUP88-207ENST00000573584 A0A0G2JLW4 131 aa18.31■□□□□ 0.52
NUP88-207ENST00000573584 HSPD1P10809 573 aaKnown RBP18.31■□□□□ 0.52
NUP88-207ENST00000573584 U2AF2P26368 475 aaKnown RBP eCLIP18.31■□□□□ 0.526e-6■□□□□ 8.6
NUP88-207ENST00000573584 ARID5BQ14865 1188 aa18.31■□□□□ 0.52
NUP88-207ENST00000573584 ENGASEQ8NFI3 743 aa18.31■□□□□ 0.52
NUP88-207ENST00000573584 ANO10Q9NW15 660 aa18.31■□□□□ 0.52
NUP88-207ENST00000573584 NEMFO60524 1076 aa18.31■□□□□ 0.52
NUP88-207ENST00000573584 PDIA3P30101 505 aaKnown RBP18.31■□□□□ 0.52
NUP88-207ENST00000573584 ZMYM1Q5SVZ6 1142 aa18.31■□□□□ 0.52
NUP88-207ENST00000573584 CHST3Q7LGC8 479 aa18.31■□□□□ 0.52
NUP88-207ENST00000573584 FSIP1Q8NA03 581 aa18.31■□□□□ 0.52
NUP88-207ENST00000573584 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.31■□□□□ 0.522e-6■■□□□ 13.8
NUP88-207ENST00000573584 FOXO4P98177 505 aa18.3■□□□□ 0.52
NUP88-207ENST00000573584 DMTNQ08495 405 aa18.3■□□□□ 0.52
NUP88-207ENST00000573584 ATG9AQ7Z3C6 839 aa18.3■□□□□ 0.52
NUP88-207ENST00000573584 DCAF5Q96JK2 942 aa18.3■□□□□ 0.52
NUP88-207ENST00000573584 SYCP1Q15431 976 aa18.3■□□□□ 0.52
NUP88-207ENST00000573584 DHX40Q8IX18 779 aaKnown RBP18.3■□□□□ 0.52
NUP88-207ENST00000573584 ZNF592Q92610 1267 aa18.3■□□□□ 0.52
NUP88-207ENST00000573584 SALL1Q9NSC2 1324 aa18.3■□□□□ 0.52
NUP88-207ENST00000573584 CEP135Q66GS9 1140 aa18.29■□□□□ 0.52
NUP88-207ENST00000573584 FILIP1Q7Z7B0 1213 aa18.29■□□□□ 0.52
NUP88-207ENST00000573584 ZNF274Q96GC6 653 aaPredicted RBP18.29■□□□□ 0.52
NUP88-207ENST00000573584 CSB-PGBD3P0DP91 1061 aa18.29■□□□□ 0.52
NUP88-207ENST00000573584 SKILP12757 684 aa18.29■□□□□ 0.52
NUP88-207ENST00000573584 RBM6P78332 1123 aaKnown RBP18.29■□□□□ 0.52
NUP88-207ENST00000573584 ILDR1Q86SU0 546 aaPredicted RBP18.29■□□□□ 0.52
NUP88-207ENST00000573584 H7C1W4 665 aa18.29■□□□□ 0.52
NUP88-207ENST00000573584 UTP14CQ5TAP6 766 aaKnown RBP18.29■□□□□ 0.52
NUP88-207ENST00000573584 ERCC4Q92889 916 aaPredicted RBP18.29■□□□□ 0.52
NUP88-207ENST00000573584 CYP27B1O15528 508 aa18.28■□□□□ 0.52
NUP88-207ENST00000573584 CEP57L1Q8IYX8 460 aa18.28■□□□□ 0.52
NUP88-207ENST00000573584 FBXW7Q969H0 707 aa18.28■□□□□ 0.52
NUP88-207ENST00000573584 CHMP4CQ96CF2 233 aa18.28■□□□□ 0.52
NUP88-207ENST00000573584 SDF4Q9BRK5 362 aa18.28■□□□□ 0.52
NUP88-207ENST00000573584 GPR108Q9NPR9 543 aa18.28■□□□□ 0.52
NUP88-207ENST00000573584 PCDHA7Q9UN72 937 aa18.28■□□□□ 0.52
NUP88-207ENST00000573584 MAST3O60307 1309 aa18.28■□□□□ 0.52
NUP88-207ENST00000573584 SCN11AQ9UI33 1791 aa18.27■□□□□ 0.52
NUP88-207ENST00000573584 MEGF6O75095 1541 aa18.27■□□□□ 0.52
NUP88-207ENST00000573584 USP27XA6NNY8 438 aa18.27■□□□□ 0.52
NUP88-207ENST00000573584 RNF113AO15541 343 aaKnown RBP18.27■□□□□ 0.52
NUP88-207ENST00000573584 IFIT1P09914 478 aaKnown RBP18.27■□□□□ 0.52
NUP88-207ENST00000573584 IL15P40933 162 aaPredicted RBP18.27■□□□□ 0.52
NUP88-207ENST00000573584 CABP4P57796 275 aa18.27■□□□□ 0.52
NUP88-207ENST00000573584 NAT10Q9H0A0 1025 aaKnown RBP18.27■□□□□ 0.52
NUP88-207ENST00000573584 RGPD5Q99666 1765 aa18.27■□□□□ 0.52
NUP88-207ENST00000573584 CARMIL3Q8ND23 1372 aa18.27■□□□□ 0.52
NUP88-207ENST00000573584 CCDC69A6NI79 296 aa18.27■□□□□ 0.52
NUP88-207ENST00000573584 TICAM2Q86XR7 235 aa18.27■□□□□ 0.52
NUP88-207ENST00000573584 MRPS27Q92552 414 aaKnown RBP18.27■□□□□ 0.52
NUP88-207ENST00000573584 NAA30Q147X3 362 aaPredicted RBP18.26■□□□□ 0.51
NUP88-207ENST00000573584 TTLL5Q6EMB2 1281 aa18.26■□□□□ 0.51
NUP88-207ENST00000573584 AOPEPQ8N6M6 819 aa18.26■□□□□ 0.51
NUP88-207ENST00000573584 FEZ1Q99689 392 aa18.26■□□□□ 0.51
NUP88-207ENST00000573584 FDPSP14324 419 aaKnown RBP18.26■□□□□ 0.51
NUP88-207ENST00000573584 PTPN14Q15678 1187 aa18.26■□□□□ 0.51
NUP88-207ENST00000573584 FMR1NBQ8N0W7 255 aaPredicted RBP18.26■□□□□ 0.51
NUP88-207ENST00000573584 LRRC24Q50LG9 513 aa18.26■□□□□ 0.51
NUP88-207ENST00000573584 ADALQ6DHV7 355 aa18.26■□□□□ 0.51
NUP88-207ENST00000573584 CWC25Q9NXE8 425 aaPredicted RBP18.26■□□□□ 0.51
NUP88-207ENST00000573584 RTEL1Q9NZ71 1219 aa18.26■□□□□ 0.51
NUP88-207ENST00000573584 A0A1B0GVL5 298 aa18.25■□□□□ 0.51
NUP88-207ENST00000573584 AFDNP55196 1824 aaKnown RBP18.25■□□□□ 0.51
NUP88-207ENST00000573584 ZNF594Q96JF6 807 aaPredicted RBP18.25■□□□□ 0.51
NUP88-207ENST00000573584 GTPBP4Q9BZE4 634 aaKnown RBP18.25■□□□□ 0.51
NUP88-207ENST00000573584 A0A1B0GUL7 405 aa18.24■□□□□ 0.51
NUP88-207ENST00000573584 NBPF26B4DH59 902 aa18.24■□□□□ 0.51
NUP88-207ENST00000573584 M0R2C6 588 aa18.24■□□□□ 0.51
NUP88-207ENST00000573584 EYA2O00167 538 aa18.24■□□□□ 0.51
NUP88-207ENST00000573584 CCZ1BP86790 482 aa18.24■□□□□ 0.51
NUP88-207ENST00000573584 CCZ1P86791 482 aaPredicted RBP18.24■□□□□ 0.51
NUP88-207ENST00000573584 SF3A1Q15459 793 aaKnown RBP18.24■□□□□ 0.51
NUP88-207ENST00000573584 NBPF14Q5TI25 921 aa18.24■□□□□ 0.51
NUP88-207ENST00000573584 OTUD7BQ6GQQ9 843 aa18.24■□□□□ 0.51
NUP88-207ENST00000573584 NBPF10Q6P3W6 841 aaKnown RBP18.24■□□□□ 0.51
NUP88-207ENST00000573584 NBPF15Q8N660 670 aa18.24■□□□□ 0.51
NUP88-207ENST00000573584 GPHNQ9NQX3 736 aaPredicted RBP18.24■□□□□ 0.51
NUP88-207ENST00000573584 ZHX1Q9UKY1 873 aaPredicted RBP18.24■□□□□ 0.51
NUP88-207ENST00000573584 NYAP1Q6ZVC0 841 aa18.24■□□□□ 0.51
NUP88-207ENST00000573584 TRMT1Q9NXH9 659 aaKnown RBP18.24■□□□□ 0.51
NUP88-207ENST00000573584 NDUFA8P51970 172 aa18.23■□□□□ 0.51
NUP88-207ENST00000573584 FKBP4Q02790 459 aaKnown RBP eCLIP18.23■□□□□ 0.51
NUP88-207ENST00000573584 ZRSR1Q15695 479 aaKnown RBP18.23■□□□□ 0.51
NUP88-207ENST00000573584 TTLL7Q6ZT98 887 aa18.23■□□□□ 0.51
NUP88-207ENST00000573584 LINC00301Q8NCQ3 95 aa18.23■□□□□ 0.51
NUP88-207ENST00000573584 OSBP2Q969R2 916 aa18.23■□□□□ 0.51
NUP88-207ENST00000573584 CGNQ9P2M7 1197 aaKnown RBP18.23■□□□□ 0.51
NUP88-207ENST00000573584 LAMA4Q16363 1823 aa18.23■□□□□ 0.51
NUP88-207ENST00000573584 A0A1W2PQ27 194 aa18.23■□□□□ 0.51
NUP88-207ENST00000573584 A0A1W2PQ64 194 aa18.23■□□□□ 0.51
NUP88-207ENST00000573584 A0A1W2PQD8 194 aa18.23■□□□□ 0.51
NUP88-207ENST00000573584 POLR3DP05423 398 aaPredicted RBP18.23■□□□□ 0.51
NUP88-207ENST00000573584 STK38Q15208 465 aa18.23■□□□□ 0.51
NUP88-207ENST00000573584 BCL11BQ9C0K0 894 aaPredicted RBP18.23■□□□□ 0.51
NUP88-207ENST00000573584 TRPM3Q9HCF6 1732 aaPredicted RBP18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms