RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 CWF19L2Q2TBE0 894 aaKnown RBP10.29□□□□□ -0.76
VPS53-214ENST00000572607 LINS1Q8NG48 757 aa10.29□□□□□ -0.76
VPS53-214ENST00000572607 JARID2Q92833 1246 aaPredicted RBP10.29□□□□□ -0.76
VPS53-214ENST00000572607 CELF1Q92879 486 aaKnown RBP10.29□□□□□ -0.76
VPS53-214ENST00000572607 PRDM10Q9NQV6 1147 aa10.29□□□□□ -0.76
VPS53-214ENST00000572607 FZD9O00144 591 aa10.28□□□□□ -0.76
VPS53-214ENST00000572607 CTSWP56202 376 aa10.28□□□□□ -0.76
VPS53-214ENST00000572607 RPS8P62241 208 aaKnown RBP10.28□□□□□ -0.76
VPS53-214ENST00000572607 SLFN5Q08AF3 891 aa10.28□□□□□ -0.76
VPS53-214ENST00000572607 UBE3BQ7Z3V4 1068 aa10.28□□□□□ -0.76
VPS53-214ENST00000572607 GPC2Q8N158 579 aa10.28□□□□□ -0.76
VPS53-214ENST00000572607 KHSRPQ92945 711 aaKnown RBP eCLIP10.28□□□□□ -0.76
VPS53-214ENST00000572607 CCDC85AQ96PX6 553 aaPredicted RBP10.28□□□□□ -0.76
VPS53-214ENST00000572607 CDC5LQ99459 802 aaKnown RBP10.28□□□□□ -0.76
VPS53-214ENST00000572607 EYA3Q99504 573 aa10.28□□□□□ -0.76
VPS53-214ENST00000572607 NSFL1CQ9UNZ2 370 aaKnown RBP10.28□□□□□ -0.76
VPS53-214ENST00000572607 LMOD1P29536 600 aaPredicted RBP10.27□□□□□ -0.77
VPS53-214ENST00000572607 VEGFBP49765 207 aa10.27□□□□□ -0.77
VPS53-214ENST00000572607 GCKRQ14397 625 aa10.27□□□□□ -0.77
VPS53-214ENST00000572607 AOC3Q16853 763 aa10.27□□□□□ -0.77
VPS53-214ENST00000572607 ANKRD18AQ8IVF6 992 aa10.27□□□□□ -0.77
VPS53-214ENST00000572607 RTFDC1Q9BY42 306 aaPredicted RBP10.27□□□□□ -0.77
VPS53-214ENST00000572607 TAF1DQ9H5J8 278 aaPredicted RBP10.27□□□□□ -0.77
VPS53-214ENST00000572607 GJA3Q9Y6H8 435 aa10.27□□□□□ -0.77
VPS53-214ENST00000572607 ZNF541Q9H0D2 1346 aa10.27□□□□□ -0.77
VPS53-214ENST00000572607 DDX60Q8IY21 1712 aaKnown RBP10.27□□□□□ -0.77
VPS53-214ENST00000572607 TNRC18O15417 2968 aaPredicted RBP10.26□□□□□ -0.77
VPS53-214ENST00000572607 TRPM7Q96QT4 1865 aa10.26□□□□□ -0.77
VPS53-214ENST00000572607 F6X3S4 739 aa10.26□□□□□ -0.77
VPS53-214ENST00000572607 C6orf229H3BNL8 230 aa10.26□□□□□ -0.77
VPS53-214ENST00000572607 H7C1W4 665 aa10.26□□□□□ -0.77
VPS53-214ENST00000572607 IGHMBP2P38935 993 aaKnown RBP10.26□□□□□ -0.77
VPS53-214ENST00000572607 KIAA2012Q0VF49 1180 aa10.26□□□□□ -0.77
VPS53-214ENST00000572607 SLC4A10Q6U841 1118 aa10.26□□□□□ -0.77
VPS53-214ENST00000572607 SLC51AQ86UW1 340 aa10.26□□□□□ -0.77
VPS53-214ENST00000572607 RNF166Q96A37 237 aaPredicted RBP10.26□□□□□ -0.77
VPS53-214ENST00000572607 SEC31BQ9NQW1 1179 aa10.26□□□□□ -0.77
VPS53-214ENST00000572607 WBP1LQ9NX94 342 aa10.26□□□□□ -0.77
VPS53-214ENST00000572607 ANKIB1Q9P2G1 1089 aa10.26□□□□□ -0.77
VPS53-214ENST00000572607 HACL1Q9UJ83 578 aa10.26□□□□□ -0.77
VPS53-214ENST00000572607 ZNRF3Q9ULT6 936 aa10.26□□□□□ -0.77
VPS53-214ENST00000572607 LAMB2P55268 1798 aa10.26□□□□□ -0.77
VPS53-214ENST00000572607 CT47B1P0C2W7 299 aaPredicted RBP10.25□□□□□ -0.77
VPS53-214ENST00000572607 GPSM2P81274 684 aa10.25□□□□□ -0.77
VPS53-214ENST00000572607 WASHC4Q2M389 1173 aa10.25□□□□□ -0.77
VPS53-214ENST00000572607 BEND3Q5T5X7 828 aa10.25□□□□□ -0.77
VPS53-214ENST00000572607 LDHDQ86WU2 507 aa10.25□□□□□ -0.77
VPS53-214ENST00000572607 TTLL11Q8NHH1 800 aa10.25□□□□□ -0.77
VPS53-214ENST00000572607 SRCIN1Q9C0H9 1055 aa10.25□□□□□ -0.77
VPS53-214ENST00000572607 C9orf78Q9NZ63 289 aaPredicted RBP10.25□□□□□ -0.77
VPS53-214ENST00000572607 PTPRCP08575 1304 aa10.25□□□□□ -0.77
VPS53-214ENST00000572607 RTL9Q8NET4 1388 aa10.25□□□□□ -0.77
VPS53-214ENST00000572607 ALDH1L1O75891 902 aa10.24□□□□□ -0.77
VPS53-214ENST00000572607 HSPA8P11142 646 aaKnown RBP10.24□□□□□ -0.77
VPS53-214ENST00000572607 EPHX2P34913 555 aa10.24□□□□□ -0.77
VPS53-214ENST00000572607 TNIP1Q15025 636 aa10.24□□□□□ -0.77
VPS53-214ENST00000572607 ALDH1L2Q3SY69 923 aa10.24□□□□□ -0.77
VPS53-214ENST00000572607 EAPPQ56P03 285 aaPredicted RBP10.24□□□□□ -0.77
VPS53-214ENST00000572607 CIAPIN1Q6FI81 312 aa10.24□□□□□ -0.77
VPS53-214ENST00000572607 PNMA8AQ86V59 439 aaPredicted RBP10.24□□□□□ -0.77
VPS53-214ENST00000572607 MRPL50Q8N5N7 158 aaKnown RBP10.24□□□□□ -0.77
VPS53-214ENST00000572607 CDCA7LQ96GN5 454 aa10.24□□□□□ -0.77
VPS53-214ENST00000572607 MPHOSPH8Q99549 860 aa10.24□□□□□ -0.77
VPS53-214ENST00000572607 PLA2G12BQ9BX93 195 aa10.24□□□□□ -0.77
VPS53-214ENST00000572607 ZC3H12CQ9C0D7 883 aaKnown RBP10.24□□□□□ -0.77
VPS53-214ENST00000572607 GREM2Q9H772 168 aa10.24□□□□□ -0.77
VPS53-214ENST00000572607 SMC4Q9NTJ3 1288 aa10.24□□□□□ -0.77
VPS53-214ENST00000572607 GGA1Q9UJY5 639 aa10.24□□□□□ -0.77
VPS53-214ENST00000572607 CHMP3Q9Y3E7 222 aa10.24□□□□□ -0.77
VPS53-214ENST00000572607 ANKRD18BA2A2Z9 1011 aa10.23□□□□□ -0.77
VPS53-214ENST00000572607 RASSF10A6NK89 507 aa10.23□□□□□ -0.77
VPS53-214ENST00000572607 GRM8O00222 908 aa10.23□□□□□ -0.77
VPS53-214ENST00000572607 UFL1O94874 794 aa10.23□□□□□ -0.77
VPS53-214ENST00000572607 CTCFP49711 727 aaPredicted RBP10.23□□□□□ -0.77
VPS53-214ENST00000572607 LBX1P52954 281 aa10.23□□□□□ -0.77
VPS53-214ENST00000572607 TBC1D16Q8TBP0 767 aa10.23□□□□□ -0.77
VPS53-214ENST00000572607 SSH1Q8WYL5 1049 aa10.23□□□□□ -0.77
VPS53-214ENST00000572607 BCL2L13Q9BXK5 485 aa10.23□□□□□ -0.77
VPS53-214ENST00000572607 PODXL2Q9NZ53 605 aa10.23□□□□□ -0.77
VPS53-214ENST00000572607 XDHP47989 1333 aa10.23□□□□□ -0.77
VPS53-214ENST00000572607 TMEM88BA6NKF7 163 aa10.22□□□□□ -0.77
VPS53-214ENST00000572607 RAD17O75943 681 aa10.22□□□□□ -0.77
VPS53-214ENST00000572607 ITGA6P23229 1130 aa10.22□□□□□ -0.77
VPS53-214ENST00000572607 ATP2B4P23634 1241 aa10.22□□□□□ -0.77
VPS53-214ENST00000572607 HNRNPUQ00839 825 aaKnown RBP eCLIP10.22□□□□□ -0.77
VPS53-214ENST00000572607 FMR1Q06787 632 aaKnown RBP eCLIP10.22□□□□□ -0.77
VPS53-214ENST00000572607 IFIT5Q13325 482 aaKnown RBP10.22□□□□□ -0.77
VPS53-214ENST00000572607 FAM161AQ3B820 660 aa10.22□□□□□ -0.77
VPS53-214ENST00000572607 TAF7LQ5H9L4 462 aa10.22□□□□□ -0.77
VPS53-214ENST00000572607 BSDC1Q9NW68 430 aaPredicted RBP10.22□□□□□ -0.77
VPS53-214ENST00000572607 POLLQ9UGP5 575 aa10.22□□□□□ -0.77
VPS53-214ENST00000572607 LRRC37AA6NMS7 1700 aa10.21□□□□□ -0.77
VPS53-214ENST00000572607 ECE2O60344 883 aa10.21□□□□□ -0.77
VPS53-214ENST00000572607 CSF1RP07333 972 aa10.21□□□□□ -0.77
VPS53-214ENST00000572607 CASP7P55210 303 aa10.21□□□□□ -0.77
VPS53-214ENST00000572607 CXCL9Q07325 125 aa10.21□□□□□ -0.77
VPS53-214ENST00000572607 CCDC57Q2TAC2 916 aa10.21□□□□□ -0.77
VPS53-214ENST00000572607 TRMT2AQ8IZ69 625 aaKnown RBP10.21□□□□□ -0.77
VPS53-214ENST00000572607 TMC2Q8TDI7 906 aa10.21□□□□□ -0.77
VPS53-214ENST00000572607 ABHD8Q96I13 439 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms