RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 AOC2O75106 756 aa7.92□□□□□ -1.14
VPS53-208ENST00000570650 EIF6P56537 245 aaKnown RBP7.92□□□□□ -1.14
VPS53-208ENST00000570650 CST9Q5W186 159 aa7.92□□□□□ -1.14
VPS53-208ENST00000570650 PPP1R18Q6NYC8 613 aa7.92□□□□□ -1.14
VPS53-208ENST00000570650 MORC1Q86VD1 984 aa7.92□□□□□ -1.14
VPS53-208ENST00000570650 NBPF5PQ86XG9 351 aaPredicted RBP7.92□□□□□ -1.14
VPS53-208ENST00000570650 JDP2Q8WYK2 163 aa7.92□□□□□ -1.14
VPS53-208ENST00000570650 ZNF496Q96IT1 587 aaPredicted RBP7.92□□□□□ -1.14
VPS53-208ENST00000570650 GJA3Q9Y6H8 435 aa7.92□□□□□ -1.14
VPS53-208ENST00000570650 TRPM7Q96QT4 1865 aa7.92□□□□□ -1.14
VPS53-208ENST00000570650 CASP8AP2Q9UKL3 1982 aa7.91□□□□□ -1.14
VPS53-208ENST00000570650 TRAF5O00463 557 aa7.91□□□□□ -1.14
VPS53-208ENST00000570650 HOXA2O43364 376 aa7.91□□□□□ -1.14
VPS53-208ENST00000570650 A1BGP04217 495 aa7.91□□□□□ -1.14
VPS53-208ENST00000570650 SCNN1DP51172 638 aa7.91□□□□□ -1.14
VPS53-208ENST00000570650 BRPF1P55201 1214 aaPredicted RBP7.91□□□□□ -1.14
VPS53-208ENST00000570650 GUCA2AQ02747 115 aa7.91□□□□□ -1.14
VPS53-208ENST00000570650 MTHFSDQ2M296 383 aaKnown RBP7.91□□□□□ -1.14
VPS53-208ENST00000570650 OLFM4Q6UX06 510 aa7.91□□□□□ -1.14
VPS53-208ENST00000570650 USP50Q70EL3 339 aaPredicted RBP7.91□□□□□ -1.14
VPS53-208ENST00000570650 DZIP3Q86Y13 1208 aaKnown RBP7.91□□□□□ -1.14
VPS53-208ENST00000570650 THAP11Q96EK4 314 aa7.91□□□□□ -1.14
VPS53-208ENST00000570650 PSMD1Q99460 953 aa7.91□□□□□ -1.14
VPS53-208ENST00000570650 BCORQ6W2J9 1755 aa7.9□□□□□ -1.14
VPS53-208ENST00000570650 ADH1BP00325 375 aa7.9□□□□□ -1.14
VPS53-208ENST00000570650 HMOX1P09601 288 aa7.9□□□□□ -1.14
VPS53-208ENST00000570650 ALDH1B1P30837 517 aa7.9□□□□□ -1.14
VPS53-208ENST00000570650 EPS15P42566 896 aa7.9□□□□□ -1.14
VPS53-208ENST00000570650 USP46P62068 366 aa7.9□□□□□ -1.14
VPS53-208ENST00000570650 PRPF38BQ5VTL8 546 aaKnown RBP7.9□□□□□ -1.14
VPS53-208ENST00000570650 ZNF790Q6PG37 636 aa7.9□□□□□ -1.14
VPS53-208ENST00000570650 CLEC4GQ6UXB4 293 aa7.9□□□□□ -1.14
VPS53-208ENST00000570650 TPTE2Q6XPS3 522 aa7.9□□□□□ -1.14
VPS53-208ENST00000570650 RNF19BQ6ZMZ0 732 aa7.9□□□□□ -1.14
VPS53-208ENST00000570650 SAPCD2Q86UD0 394 aa7.9□□□□□ -1.14
VPS53-208ENST00000570650 NUTM1Q86Y26 1132 aa7.9□□□□□ -1.14
VPS53-208ENST00000570650 SPIRE2Q8WWL2 714 aa7.9□□□□□ -1.14
VPS53-208ENST00000570650 HHIPL1Q96JK4 782 aa7.9□□□□□ -1.14
VPS53-208ENST00000570650 FMNL2Q96PY5 1086 aa7.9□□□□□ -1.14
VPS53-208ENST00000570650 PANK3Q9H999 370 aa7.9□□□□□ -1.14
VPS53-208ENST00000570650 ZNF652Q9Y2D9 606 aa7.9□□□□□ -1.14
VPS53-208ENST00000570650 SNED1Q8TER0 1413 aa7.89□□□□□ -1.15
VPS53-208ENST00000570650 CELF2O95319 508 aaKnown RBP7.89□□□□□ -1.15
VPS53-208ENST00000570650 TEFQ10587 303 aa7.89□□□□□ -1.15
VPS53-208ENST00000570650 GRIPAP1Q4V328 841 aa7.89□□□□□ -1.15
VPS53-208ENST00000570650 CC2D2BQ6DHV5 1058 aa7.89□□□□□ -1.15
VPS53-208ENST00000570650 CIAPIN1Q6FI81 312 aa7.89□□□□□ -1.15
VPS53-208ENST00000570650 S1PR4O95977 384 aa7.88□□□□□ -1.15
VPS53-208ENST00000570650 SOX10P56693 466 aa7.88□□□□□ -1.15
VPS53-208ENST00000570650 NOGQ13253 232 aa7.88□□□□□ -1.15
VPS53-208ENST00000570650 BRICD5Q6PL45 260 aa7.88□□□□□ -1.15
VPS53-208ENST00000570650 LARGE2Q8N3Y3 721 aa7.88□□□□□ -1.15
VPS53-208ENST00000570650 SPSB2Q99619 263 aa7.88□□□□□ -1.15
VPS53-208ENST00000570650 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.88□□□□□ -1.15
VPS53-208ENST00000570650 ADARB2Q9NS39 739 aaKnown RBP7.88□□□□□ -1.15
VPS53-208ENST00000570650 NIP7Q9Y221 180 aaKnown RBP eCLIP7.88□□□□□ -1.15
VPS53-208ENST00000570650 COL4A5P29400 1685 aa7.88□□□□□ -1.15
VPS53-208ENST00000570650 NDUFV2P19404 249 aa7.87□□□□□ -1.15
VPS53-208ENST00000570650 IL17REQ8NFR9 667 aa7.87□□□□□ -1.15
VPS53-208ENST00000570650 TBC1D2Q9BYX2 928 aa7.87□□□□□ -1.15
VPS53-208ENST00000570650 GLIS2Q9BZE0 524 aaPredicted RBP7.87□□□□□ -1.15
VPS53-208ENST00000570650 GPRC5DQ9NZD1 345 aa7.87□□□□□ -1.15
VPS53-208ENST00000570650 MOXD2PA6NHM9 499 aa7.86□□□□□ -1.15
VPS53-208ENST00000570650 FAM177BA6PVY3 158 aa7.86□□□□□ -1.15
VPS53-208ENST00000570650 GNAT3A8MTJ3 354 aa7.86□□□□□ -1.15
VPS53-208ENST00000570650 FMNL1O95466 1100 aaPredicted RBP7.86□□□□□ -1.15
VPS53-208ENST00000570650 PRKCSHP14314 528 aaPredicted RBP7.86□□□□□ -1.15
VPS53-208ENST00000570650 GTF2E1P29083 439 aaPredicted RBP7.86□□□□□ -1.15
VPS53-208ENST00000570650 PIP4K2AP48426 406 aaPredicted RBP7.86□□□□□ -1.15
VPS53-208ENST00000570650 CRY2Q49AN0 593 aa7.86□□□□□ -1.15
VPS53-208ENST00000570650 NIM1KQ8IY84 436 aa7.86□□□□□ -1.15
VPS53-208ENST00000570650 FAM160A2Q8N612 972 aaPredicted RBP7.86□□□□□ -1.15
VPS53-208ENST00000570650 GAS2L2Q8NHY3 880 aa7.86□□□□□ -1.15
VPS53-208ENST00000570650 KDM4CQ9H3R0 1056 aa7.86□□□□□ -1.15
VPS53-208ENST00000570650 ZNF408Q9H9D4 720 aa7.86□□□□□ -1.15
VPS53-208ENST00000570650 PCDHGC3Q9UN70 934 aa7.86□□□□□ -1.15
VPS53-208ENST00000570650 SALL2Q9Y467 1007 aaPredicted RBP7.86□□□□□ -1.15
VPS53-208ENST00000570650 USP16Q9Y5T5 823 aa7.86□□□□□ -1.15
VPS53-208ENST00000570650 BTBD11A6QL63 1104 aa7.85□□□□□ -1.15
VPS53-208ENST00000570650 RNF223E7ERA6 249 aa7.85□□□□□ -1.15
VPS53-208ENST00000570650 PPEF1O14829 653 aaPredicted RBP7.85□□□□□ -1.15
VPS53-208ENST00000570650 DIAPH1O60610 1272 aaKnown RBP7.85□□□□□ -1.15
VPS53-208ENST00000570650 CDC37L1Q7L3B6 337 aa7.85□□□□□ -1.15
VPS53-208ENST00000570650 SYMPKQ92797 1274 aaKnown RBP7.85□□□□□ -1.15
VPS53-208ENST00000570650 RPGRQ92834 1020 aaKnown RBP7.85□□□□□ -1.15
VPS53-208ENST00000570650 ZIC5Q96T25 663 aa7.85□□□□□ -1.15
VPS53-208ENST00000570650 SLC6A16Q9GZN6 736 aa7.85□□□□□ -1.15
VPS53-208ENST00000570650 PRDM9Q9NQV7 894 aa7.85□□□□□ -1.15
VPS53-208ENST00000570650 SAGE1Q9NXZ1 904 aa7.85□□□□□ -1.15
VPS53-208ENST00000570650 PGAP2Q9UHJ9 254 aa7.85□□□□□ -1.15
VPS53-208ENST00000570650 KNSTRNQ9Y448 316 aa7.85□□□□□ -1.15
VPS53-208ENST00000570650 NPC1L1Q9UHC9 1359 aa7.84□□□□□ -1.15
VPS53-208ENST00000570650 SIPA1L3O60292 1781 aaPredicted RBP7.84□□□□□ -1.15
VPS53-208ENST00000570650 PPIP5K2O43314 1243 aa7.84□□□□□ -1.15
VPS53-208ENST00000570650 KCNQ3O43525 872 aa7.84□□□□□ -1.15
VPS53-208ENST00000570650 SNRPA1P09661 255 aaKnown RBP7.84□□□□□ -1.15
VPS53-208ENST00000570650 FDX1P10109 184 aa7.84□□□□□ -1.15
VPS53-208ENST00000570650 GGCXP38435 758 aa7.84□□□□□ -1.15
VPS53-208ENST00000570650 HUNKP57058 714 aa7.84□□□□□ -1.15
VPS53-208ENST00000570650 Q3C1V9 767 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms