RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 PDE3BQ13370 1112 aa5.68□□□□□ -1.5
VPS39-212ENST00000570023 DMRTC2Q8IXT2 367 aaPredicted RBP5.68□□□□□ -1.5
VPS39-212ENST00000570023 DHX37Q8IY37 1157 aaKnown RBP5.68□□□□□ -1.5
VPS39-212ENST00000570023 FAM129BQ96TA1 746 aa5.68□□□□□ -1.5
VPS39-212ENST00000570023 USP35Q9P2H5 1018 aa5.68□□□□□ -1.5
VPS39-212ENST00000570023 NAP1L2Q9ULW6 460 aaPredicted RBP5.68□□□□□ -1.5
VPS39-212ENST00000570023 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.68□□□□□ -1.5
VPS39-212ENST00000570023 EREGO14944 169 aa5.67□□□□□ -1.5
VPS39-212ENST00000570023 PHACTR2O75167 634 aa5.67□□□□□ -1.5
VPS39-212ENST00000570023 ELNP15502 786 aa5.67□□□□□ -1.5
VPS39-212ENST00000570023 RAC1P63000 192 aa5.67□□□□□ -1.5
VPS39-212ENST00000570023 NCAPG2Q86XI2 1143 aa5.67□□□□□ -1.5
VPS39-212ENST00000570023 WFDC8Q8IUA0 241 aa5.67□□□□□ -1.5
VPS39-212ENST00000570023 RBCK1Q9BYM8 510 aa5.67□□□□□ -1.5
VPS39-212ENST00000570023 PBX4Q9BYU1 374 aa5.67□□□□□ -1.5
VPS39-212ENST00000570023 RASSF4Q9H2L5 321 aa5.67□□□□□ -1.5
VPS39-212ENST00000570023 ZFYVE28Q9HCC9 887 aa5.67□□□□□ -1.5
VPS39-212ENST00000570023 KANSL3Q9P2N6 904 aa5.67□□□□□ -1.5
VPS39-212ENST00000570023 FOXD3Q9UJU5 478 aaPredicted RBP5.67□□□□□ -1.5
VPS39-212ENST00000570023 WASHC2CQ9Y4E1 1318 aa5.67□□□□□ -1.5
VPS39-212ENST00000570023 FAM229AH3BQW9 127 aa5.66□□□□□ -1.5
VPS39-212ENST00000570023 NFKBIEO00221 500 aa5.66□□□□□ -1.5
VPS39-212ENST00000570023 SMNDC1O75940 238 aaKnown RBP eCLIP5.66□□□□□ -1.5
VPS39-212ENST00000570023 ATP11AP98196 1134 aa5.66□□□□□ -1.5
VPS39-212ENST00000570023 CD163Q86VB7 1156 aa5.66□□□□□ -1.5
VPS39-212ENST00000570023 FBXO11Q86XK2 927 aa5.66□□□□□ -1.5
VPS39-212ENST00000570023 TEX2Q8IWB9 1127 aa5.66□□□□□ -1.5
VPS39-212ENST00000570023 FMR1NBQ8N0W7 255 aaPredicted RBP5.66□□□□□ -1.5
VPS39-212ENST00000570023 FAM43AQ8N2R8 423 aa5.66□□□□□ -1.5
VPS39-212ENST00000570023 IL22RA1Q8N6P7 574 aa5.66□□□□□ -1.5
VPS39-212ENST00000570023 ADAM19Q9H013 955 aa5.66□□□□□ -1.5
VPS39-212ENST00000570023 MUC3BQ9H195 1237 aa5.66□□□□□ -1.5
VPS39-212ENST00000570023 DZANK1Q9NVP4 752 aa5.66□□□□□ -1.5
VPS39-212ENST00000570023 TRIM33Q9UPN9 1127 aa5.66□□□□□ -1.5
VPS39-212ENST00000570023 IVNS1ABPQ9Y6Y0 642 aa5.66□□□□□ -1.5
VPS39-212ENST00000570023 CENPJQ9HC77 1338 aaPredicted RBP5.66□□□□□ -1.5
VPS39-212ENST00000570023 C1QTNF9BB2RNN3 333 aa5.65□□□□□ -1.5
VPS39-212ENST00000570023 DEAF1O75398 565 aaPredicted RBP5.65□□□□□ -1.5
VPS39-212ENST00000570023 PROCP04070 461 aa5.65□□□□□ -1.5
VPS39-212ENST00000570023 EDN3P14138 238 aa5.65□□□□□ -1.5
VPS39-212ENST00000570023 CALD1Q05682 793 aaKnown RBP5.65□□□□□ -1.5
VPS39-212ENST00000570023 CEP135Q66GS9 1140 aa5.65□□□□□ -1.5
VPS39-212ENST00000570023 GDF6Q6KF10 455 aaPredicted RBP5.65□□□□□ -1.5
VPS39-212ENST00000570023 POP1Q99575 1024 aaKnown RBP5.65□□□□□ -1.5
VPS39-212ENST00000570023 SRA1Q9HD15 236 aaKnown RBP5.65□□□□□ -1.5
VPS39-212ENST00000570023 AMOTL2Q9Y2J4 779 aa5.65□□□□□ -1.5
VPS39-212ENST00000570023 LOC105371045A0A1W2PR82 267 aa5.64□□□□□ -1.51
VPS39-212ENST00000570023 CHRNA4P43681 627 aa5.64□□□□□ -1.51
VPS39-212ENST00000570023 HSP90AA2PQ14568 343 aaPredicted RBP5.64□□□□□ -1.51
VPS39-212ENST00000570023 GRIK4Q16099 956 aa5.64□□□□□ -1.51
VPS39-212ENST00000570023 GPAT2Q6NUI2 795 aa5.64□□□□□ -1.51
VPS39-212ENST00000570023 ADAMTSL4Q6UY14 1074 aa5.64□□□□□ -1.51
VPS39-212ENST00000570023 MAP4K3Q8IVH8 894 aa5.64□□□□□ -1.51
VPS39-212ENST00000570023 GALNT12Q8IXK2 581 aa5.64□□□□□ -1.51
VPS39-212ENST00000570023 ALKBH8Q96BT7 664 aaKnown RBP5.64□□□□□ -1.51
VPS39-212ENST00000570023 DMRTB1Q96MA1 342 aa5.64□□□□□ -1.51
VPS39-212ENST00000570023 NACC1Q96RE7 527 aa5.64□□□□□ -1.51
VPS39-212ENST00000570023 SPOCK3Q9BQ16 436 aa5.64□□□□□ -1.51
VPS39-212ENST00000570023 DCTN4Q9UJW0 460 aa5.64□□□□□ -1.51
VPS39-212ENST00000570023 ARID4BQ4LE39 1312 aaPredicted RBP5.64□□□□□ -1.51
VPS39-212ENST00000570023 C9orf172C9J069 976 aa5.63□□□□□ -1.51
VPS39-212ENST00000570023 PDE2AO00408 941 aaPredicted RBP5.63□□□□□ -1.51
VPS39-212ENST00000570023 DLL1O00548 723 aa5.63□□□□□ -1.51
VPS39-212ENST00000570023 MSTNO14793 375 aa5.63□□□□□ -1.51
VPS39-212ENST00000570023 GPR182O15218 404 aa5.63□□□□□ -1.51
VPS39-212ENST00000570023 APBA3O96018 575 aa5.63□□□□□ -1.51
VPS39-212ENST00000570023 ACPPP15309 386 aa5.63□□□□□ -1.51
VPS39-212ENST00000570023 SELPP16109 830 aa5.63□□□□□ -1.51
VPS39-212ENST00000570023 PTPRAP18433 802 aa5.63□□□□□ -1.51
VPS39-212ENST00000570023 SETDB1Q15047 1291 aa5.63□□□□□ -1.51
VPS39-212ENST00000570023 PEAR1Q5VY43 1037 aaPredicted RBP5.63□□□□□ -1.51
VPS39-212ENST00000570023 TMEM102Q8N9M5 508 aaPredicted RBP5.63□□□□□ -1.51
VPS39-212ENST00000570023 NXPE3Q969Y0 559 aa5.63□□□□□ -1.51
VPS39-212ENST00000570023 LENG1Q96BZ8 264 aaPredicted RBP5.63□□□□□ -1.51
VPS39-212ENST00000570023 OSMRQ99650 979 aa5.63□□□□□ -1.51
VPS39-212ENST00000570023 BIN2Q9UBW5 565 aaPredicted RBP5.63□□□□□ -1.51
VPS39-212ENST00000570023 PPME1Q9Y570 386 aa5.63□□□□□ -1.51
VPS39-212ENST00000570023 WASHC2AQ641Q2 1341 aa5.63□□□□□ -1.51
VPS39-212ENST00000570023 TM4SF5O14894 197 aa5.62□□□□□ -1.51
VPS39-212ENST00000570023 CDC27P30260 824 aa5.62□□□□□ -1.51
VPS39-212ENST00000570023 NRG1Q02297 640 aaPredicted RBP5.62□□□□□ -1.51
VPS39-212ENST00000570023 CNGB1Q14028 1251 aaPredicted RBP5.62□□□□□ -1.51
VPS39-212ENST00000570023 IGF2-ASQ6U949 168 aa5.62□□□□□ -1.51
VPS39-212ENST00000570023 TMC7Q7Z402 723 aa5.62□□□□□ -1.51
VPS39-212ENST00000570023 FTSJ3Q8IY81 847 aaKnown RBP5.62□□□□□ -1.51
VPS39-212ENST00000570023 ZKSCAN3Q9BRR0 538 aa5.62□□□□□ -1.51
VPS39-212ENST00000570023 BHLHE41Q9C0J9 482 aaPredicted RBP5.62□□□□□ -1.51
VPS39-212ENST00000570023 LACRTQ9GZZ8 138 aa5.62□□□□□ -1.51
VPS39-212ENST00000570023 DNAJC25Q9H1X3 360 aa5.62□□□□□ -1.51
VPS39-212ENST00000570023 NOP58Q9Y2X3 529 aaKnown RBP5.62□□□□□ -1.51
VPS39-212ENST00000570023 PPM1GO15355 546 aaPredicted RBP5.61□□□□□ -1.51
VPS39-212ENST00000570023 CPNE3O75131 537 aaKnown RBP5.61□□□□□ -1.51
VPS39-212ENST00000570023 TRPA1O75762 1119 aa5.61□□□□□ -1.51
VPS39-212ENST00000570023 CANXP27824 592 aaKnown RBP5.61□□□□□ -1.51
VPS39-212ENST00000570023 ORC1Q13415 861 aa5.61□□□□□ -1.51
VPS39-212ENST00000570023 ADGRE1Q14246 886 aa5.61□□□□□ -1.51
VPS39-212ENST00000570023 DSC3Q14574 896 aa5.61□□□□□ -1.51
VPS39-212ENST00000570023 USPL1Q5W0Q7 1092 aa5.61□□□□□ -1.51
VPS39-212ENST00000570023 TMC1Q8TDI8 760 aa5.61□□□□□ -1.51
VPS39-212ENST00000570023 DCAF11Q8TEB1 546 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms