RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 LIG3P49916 1009 aa12.59□□□□□ -0.39
CLK3-226ENST00000569406 TEX11Q8IYF3 940 aa12.59□□□□□ -0.39
CLK3-226ENST00000569406 EXOC4Q96A65 974 aa12.59□□□□□ -0.39
CLK3-226ENST00000569406 PNMA6EA0A0J9YXQ4 647 aa12.58□□□□□ -0.4
CLK3-226ENST00000569406 FLIIQ13045 1269 aa12.58□□□□□ -0.4
CLK3-226ENST00000569406 TATDN2Q93075 761 aa12.58□□□□□ -0.4
CLK3-226ENST00000569406 AXIN2Q9Y2T1 843 aa12.58□□□□□ -0.4
CLK3-226ENST00000569406 KCNQ3O43525 872 aa12.58□□□□□ -0.4
CLK3-226ENST00000569406 ERCC3P19447 782 aa12.58□□□□□ -0.4
CLK3-226ENST00000569406 PEX19P40855 299 aa12.58□□□□□ -0.4
CLK3-226ENST00000569406 SNX1Q13596 522 aa12.58□□□□□ -0.4
CLK3-226ENST00000569406 FBXW10Q5XX13 1052 aa12.58□□□□□ -0.4
CLK3-226ENST00000569406 CADPS2Q86UW7 1296 aa12.58□□□□□ -0.4
CLK3-226ENST00000569406 SH3GL3Q99963 347 aa12.58□□□□□ -0.4
CLK3-226ENST00000569406 HEG1Q9ULI3 1381 aa12.58□□□□□ -0.4
CLK3-226ENST00000569406 GCKP35557 465 aa12.58□□□□□ -0.4
CLK3-226ENST00000569406 NEDD9Q14511 834 aa12.58□□□□□ -0.4
CLK3-226ENST00000569406 CCDC26Q8TAB7 109 aa12.58□□□□□ -0.4
CLK3-226ENST00000569406 NRBP1Q9UHY1 535 aa12.58□□□□□ -0.4
CLK3-226ENST00000569406 EME2A4GXA9 379 aaPredicted RBP12.57□□□□□ -0.4
CLK3-226ENST00000569406 TPD52L2O43399 206 aaKnown RBP12.57□□□□□ -0.4
CLK3-226ENST00000569406 GADD45BO75293 160 aaPredicted RBP12.57□□□□□ -0.4
CLK3-226ENST00000569406 LRRC59Q96AG4 307 aaKnown RBP12.57□□□□□ -0.4
CLK3-226ENST00000569406 LTV1Q96GA3 475 aaPredicted RBP12.57□□□□□ -0.4
CLK3-226ENST00000569406 SDSP20132 328 aa12.57□□□□□ -0.4
CLK3-226ENST00000569406 RPUSD2Q8IZ73 545 aaKnown RBP12.57□□□□□ -0.4
CLK3-226ENST00000569406 USP44Q9H0E7 712 aa12.57□□□□□ -0.4
CLK3-226ENST00000569406 ZDHHC9Q9Y397 364 aa12.57□□□□□ -0.4
CLK3-226ENST00000569406 ANKRD33BA6NCL7 494 aa12.56□□□□□ -0.4
CLK3-226ENST00000569406 ARHGEF25Q86VW2 580 aa12.56□□□□□ -0.4
CLK3-226ENST00000569406 ACRBPQ8NEB7 543 aa12.56□□□□□ -0.4
CLK3-226ENST00000569406 OSBPL3Q9H4L5 887 aa12.56□□□□□ -0.4
CLK3-226ENST00000569406 PHAXQ9H814 394 aaKnown RBP12.56□□□□□ -0.4
CLK3-226ENST00000569406 BABAM1Q9NWV8 329 aa12.56□□□□□ -0.4
CLK3-226ENST00000569406 ABCD1P33897 745 aa12.56□□□□□ -0.4
CLK3-226ENST00000569406 TAF7Q15545 349 aaPredicted RBP12.56□□□□□ -0.4
CLK3-226ENST00000569406 LMTK3Q96Q04 1460 aa12.56□□□□□ -0.4
CLK3-226ENST00000569406 SKAP2O75563 359 aaPredicted RBP12.56□□□□□ -0.4
CLK3-226ENST00000569406 ATP2B2Q01814 1243 aa12.56□□□□□ -0.4
CLK3-226ENST00000569406 IQUBQ8NA54 791 aa12.56□□□□□ -0.4
CLK3-226ENST00000569406 UBXN4Q92575 508 aa12.56□□□□□ -0.4
CLK3-226ENST00000569406 VPS18Q9P253 973 aa12.56□□□□□ -0.4
CLK3-226ENST00000569406 A0A087WUV0 522 aaPredicted RBP12.55□□□□□ -0.4
CLK3-226ENST00000569406 CCP110O43303 1012 aa12.55□□□□□ -0.4
CLK3-226ENST00000569406 RWDD2BP57060 319 aa12.55□□□□□ -0.4
CLK3-226ENST00000569406 EIF4A1P60842 406 aaKnown RBP12.55□□□□□ -0.4
CLK3-226ENST00000569406 LRRC31Q6UY01 552 aa12.55□□□□□ -0.4
CLK3-226ENST00000569406 FILIP1Q7Z7B0 1213 aa12.55□□□□□ -0.4
CLK3-226ENST00000569406 KAT2BQ92831 832 aa12.55□□□□□ -0.4
CLK3-226ENST00000569406 USP26Q9BXU7 913 aa12.55□□□□□ -0.4
CLK3-226ENST00000569406 ANAPC4Q9UJX5 808 aa12.55□□□□□ -0.4
CLK3-226ENST00000569406 C5P01031 1676 aa12.55□□□□□ -0.4
CLK3-226ENST00000569406 TRAF1Q13077 416 aa12.55□□□□□ -0.4
CLK3-226ENST00000569406 ZNF483Q8TF39 744 aaPredicted RBP12.55□□□□□ -0.4
CLK3-226ENST00000569406 NECTIN2Q92692 538 aa12.55□□□□□ -0.4
CLK3-226ENST00000569406 MRFAP1L1Q96HT8 127 aa12.55□□□□□ -0.4
CLK3-226ENST00000569406 RBBP5Q15291 538 aaKnown RBP12.55□□□□□ -0.4
CLK3-226ENST00000569406 ESCO1Q5FWF5 840 aa12.55□□□□□ -0.4
CLK3-226ENST00000569406 SLC4A10Q6U841 1118 aa12.55□□□□□ -0.4
CLK3-226ENST00000569406 LRRN4CLQ8ND94 238 aa12.55□□□□□ -0.4
CLK3-226ENST00000569406 RMI1Q9H9A7 625 aa12.55□□□□□ -0.4
CLK3-226ENST00000569406 GLI3P10071 1580 aa12.54□□□□□ -0.4
CLK3-226ENST00000569406 USP27XA6NNY8 438 aa12.54□□□□□ -0.4
CLK3-226ENST00000569406 GCFC2P16383 781 aaKnown RBP12.54□□□□□ -0.4
CLK3-226ENST00000569406 CCT4P50991 539 aaKnown RBP12.54□□□□□ -0.4
CLK3-226ENST00000569406 SCRN1Q12765 414 aa12.54□□□□□ -0.4
CLK3-226ENST00000569406 ARMC2Q8NEN0 867 aa12.54□□□□□ -0.4
CLK3-226ENST00000569406 KCNB2Q92953 911 aa12.54□□□□□ -0.4
CLK3-226ENST00000569406 SYTL4Q96C24 671 aaPredicted RBP12.54□□□□□ -0.4
CLK3-226ENST00000569406 XIRP1Q702N8 1843 aaKnown RBP12.54□□□□□ -0.4
CLK3-226ENST00000569406 C1orf167Q5SNV9 1468 aa12.54□□□□□ -0.4
CLK3-226ENST00000569406 CDC45O75419 566 aa12.54□□□□□ -0.4
CLK3-226ENST00000569406 ZSCAN25Q6NSZ9 544 aa12.54□□□□□ -0.4
CLK3-226ENST00000569406 ZNF232Q9UNY5 417 aa12.54□□□□□ -0.4
CLK3-226ENST00000569406 KIF1AQ12756 1690 aa12.54□□□□□ -0.4
CLK3-226ENST00000569406 GIMAP6Q6P9H5 292 aa12.54□□□□□ -0.4
CLK3-226ENST00000569406 ANKRD18AQ8IVF6 992 aa12.54□□□□□ -0.4
CLK3-226ENST00000569406 SCN11AQ9UI33 1791 aa12.53□□□□□ -0.4
CLK3-226ENST00000569406 SOS1Q07889 1333 aaPredicted RBP12.53□□□□□ -0.4
CLK3-226ENST00000569406 C21orf2O43822 256 aa12.53□□□□□ -0.4
CLK3-226ENST00000569406 CPP00450 1065 aa12.53□□□□□ -0.4
CLK3-226ENST00000569406 GCP02774 474 aa12.53□□□□□ -0.4
CLK3-226ENST00000569406 KIRREL3Q8IZU9 778 aa12.53□□□□□ -0.4
CLK3-226ENST00000569406 PROCA1Q8NCQ7 364 aaPredicted RBP12.53□□□□□ -0.4
CLK3-226ENST00000569406 PARD3BQ8TEW8 1205 aa12.53□□□□□ -0.4
CLK3-226ENST00000569406 ZBTB10Q96DT7 871 aa12.53□□□□□ -0.4
CLK3-226ENST00000569406 KIF9Q9HAQ2 790 aa12.53□□□□□ -0.4
CLK3-226ENST00000569406 ADCY9O60503 1353 aa12.53□□□□□ -0.4
CLK3-226ENST00000569406 ZRANB2O95218 330 aaKnown RBP eCLIP12.53□□□□□ -0.4
CLK3-226ENST00000569406 CCDC183Q5T5S1 534 aa12.53□□□□□ -0.4
CLK3-226ENST00000569406 TSHZ3Q63HK5 1081 aa12.53□□□□□ -0.4
CLK3-226ENST00000569406 TRIM5Q9C035 493 aa12.53□□□□□ -0.4
CLK3-226ENST00000569406 ERBB3P21860 1342 aa12.53□□□□□ -0.4
CLK3-226ENST00000569406 ERC1Q8IUD2 1116 aa12.53□□□□□ -0.4
CLK3-226ENST00000569406 ODF2LQ9ULJ1 636 aa12.53□□□□□ -0.4
CLK3-226ENST00000569406 SASH3O75995 380 aa12.52□□□□□ -0.4
CLK3-226ENST00000569406 PDE1AP54750 535 aa12.52□□□□□ -0.4
CLK3-226ENST00000569406 CCDC30Q5VVM6 783 aa12.52□□□□□ -0.4
CLK3-226ENST00000569406 IL25Q9H293 177 aa12.52□□□□□ -0.4
CLK3-226ENST00000569406 SMC3Q9UQE7 1217 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms