RNA–Protein interactions for RNA: ENST00000569066.2

UBR1-208, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 1 (best)

Gene UBR1, Length 2,250 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-208ENST00000569066 PCBP4P57723 403 aaKnown RBP8.95□□□□□ -0.98
UBR1-208ENST00000569066 SYT9Q86SS6 491 aa8.94□□□□□ -0.98
UBR1-208ENST00000569066 ADAMTS1Q9UHI8 967 aa8.94□□□□□ -0.98
UBR1-208ENST00000569066 POTECB2RU33 542 aa8.94□□□□□ -0.98
UBR1-208ENST00000569066 GTF2F1P35269 517 aaKnown RBP eCLIP8.94□□□□□ -0.98
UBR1-208ENST00000569066 ZNF157P51786 506 aaPredicted RBP8.94□□□□□ -0.98
UBR1-208ENST00000569066 VWA5B2Q8N398 1253 aa8.94□□□□□ -0.98
UBR1-208ENST00000569066 PAGE1O75459 146 aa8.93□□□□□ -0.98
UBR1-208ENST00000569066 FAAP100Q0VG06 881 aa8.93□□□□□ -0.98
UBR1-208ENST00000569066 NOC4LQ9BVI4 516 aaKnown RBP8.93□□□□□ -0.98
UBR1-208ENST00000569066 SENP2Q9HC62 589 aa8.93□□□□□ -0.98
UBR1-208ENST00000569066 NAGPAQ9UK23 515 aa8.93□□□□□ -0.98
UBR1-208ENST00000569066 ENC1O14682 589 aa8.93□□□□□ -0.98
UBR1-208ENST00000569066 PPFIA3O75145 1194 aa8.93□□□□□ -0.98
UBR1-208ENST00000569066 NRLP54845 237 aa8.93□□□□□ -0.98
UBR1-208ENST00000569066 GPLD1P80108 840 aa8.93□□□□□ -0.98
UBR1-208ENST00000569066 SLC43A3Q8NBI5 491 aa8.93□□□□□ -0.98
UBR1-208ENST00000569066 TRPM4Q8TD43 1214 aa8.93□□□□□ -0.98
UBR1-208ENST00000569066 LOC102724428A0A0B4J2F2 783 aa8.92□□□□□ -0.98
UBR1-208ENST00000569066 HOXD8P13378 290 aaPredicted RBP8.92□□□□□ -0.98
UBR1-208ENST00000569066 GJA8P48165 433 aa8.92□□□□□ -0.98
UBR1-208ENST00000569066 SIK1P57059 783 aa8.92□□□□□ -0.98
UBR1-208ENST00000569066 FAM160A1Q05DH4 1040 aa8.92□□□□□ -0.98
UBR1-208ENST00000569066 NXPE3Q969Y0 559 aa8.92□□□□□ -0.98
UBR1-208ENST00000569066 DNAJB12Q9NXW2 375 aaKnown RBP8.92□□□□□ -0.98
UBR1-208ENST00000569066 PRR12Q9ULL5 1215 aa8.92□□□□□ -0.98
UBR1-208ENST00000569066 EIF2AK2P19525 551 aaKnown RBP8.92□□□□□ -0.98
UBR1-208ENST00000569066 GBP2P32456 591 aaPredicted RBP8.92□□□□□ -0.98
UBR1-208ENST00000569066 MCF2L2Q86YR7 1114 aa8.92□□□□□ -0.98
UBR1-208ENST00000569066 SPACA7Q96KW9 195 aa8.92□□□□□ -0.98
UBR1-208ENST00000569066 UBE2OQ9C0C9 1292 aaKnown RBP8.92□□□□□ -0.98
UBR1-208ENST00000569066 MUC3BQ9H195 1237 aa8.92□□□□□ -0.98
UBR1-208ENST00000569066 GNL2Q13823 731 aaKnown RBP8.91□□□□□ -0.98
UBR1-208ENST00000569066 FAM182BQ5T319 152 aa8.91□□□□□ -0.98
UBR1-208ENST00000569066 KIFC2Q96AC6 838 aa8.91□□□□□ -0.98
UBR1-208ENST00000569066 GMLQ99445 158 aa8.91□□□□□ -0.98
UBR1-208ENST00000569066 POP1Q99575 1024 aaKnown RBP8.91□□□□□ -0.98
UBR1-208ENST00000569066 PPP4R2Q9NY27 417 aa8.91□□□□□ -0.98
UBR1-208ENST00000569066 A0A096LPE4 126 aa8.91□□□□□ -0.98
UBR1-208ENST00000569066 A0A1W2PPZ6 126 aa8.91□□□□□ -0.98
UBR1-208ENST00000569066 CPB1P15086 417 aa8.91□□□□□ -0.98
UBR1-208ENST00000569066 SPON2Q9BUD6 331 aa8.91□□□□□ -0.98
UBR1-208ENST00000569066 BHLHE41Q9C0J9 482 aaPredicted RBP8.91□□□□□ -0.98
UBR1-208ENST00000569066 KLF15Q9UIH9 416 aa8.91□□□□□ -0.98
UBR1-208ENST00000569066 FGRP09769 529 aa8.9□□□□□ -0.98
UBR1-208ENST00000569066 ATP2B1P20020 1258 aa8.9□□□□□ -0.98
UBR1-208ENST00000569066 ITPKAP23677 461 aa8.9□□□□□ -0.98
UBR1-208ENST00000569066 ARID5AQ03989 594 aa8.9□□□□□ -0.98
UBR1-208ENST00000569066 LAPTM4AQ15012 233 aa8.9□□□□□ -0.98
UBR1-208ENST00000569066 ZNF468Q5VIY5 522 aaPredicted RBP8.9□□□□□ -0.98
UBR1-208ENST00000569066 GPRASP2Q96D09 838 aa8.9□□□□□ -0.98
UBR1-208ENST00000569066 C11orf95C9JLR9 678 aaPredicted RBP8.89□□□□□ -0.99
UBR1-208ENST00000569066 PDE2AO00408 941 aaPredicted RBP8.89□□□□□ -0.99
UBR1-208ENST00000569066 FBXL19Q6PCT2 694 aa8.89□□□□□ -0.99
UBR1-208ENST00000569066 PBX4Q9BYU1 374 aa8.89□□□□□ -0.99
UBR1-208ENST00000569066 ZNF576Q9H609 170 aa8.89□□□□□ -0.99
UBR1-208ENST00000569066 PPM1HQ9ULR3 514 aa8.89□□□□□ -0.99
UBR1-208ENST00000569066 ATF4P18848 351 aaPredicted RBP8.89□□□□□ -0.99
UBR1-208ENST00000569066 RASIP1Q5U651 963 aa8.89□□□□□ -0.99
UBR1-208ENST00000569066 CEP135Q66GS9 1140 aa8.89□□□□□ -0.99
UBR1-208ENST00000569066 DPH6Q7L8W6 267 aa8.89□□□□□ -0.99
UBR1-208ENST00000569066 TMEM102Q8N9M5 508 aaPredicted RBP8.89□□□□□ -0.99
UBR1-208ENST00000569066 PHC3Q8NDX5 983 aa8.89□□□□□ -0.99
UBR1-208ENST00000569066 RHOVQ96L33 236 aa8.89□□□□□ -0.99
UBR1-208ENST00000569066 TMEM74Q96NL1 305 aa8.89□□□□□ -0.99
UBR1-208ENST00000569066 RSRP1Q9BUV0 290 aa8.89□□□□□ -0.99
UBR1-208ENST00000569066 SEC31BQ9NQW1 1179 aa8.89□□□□□ -0.99
UBR1-208ENST00000569066 GAS6Q14393 721 aa8.88□□□□□ -0.99
UBR1-208ENST00000569066 FAM35AQ86V20 835 aa8.88□□□□□ -0.99
UBR1-208ENST00000569066 KIAA0825Q8IV33 1275 aa8.88□□□□□ -0.99
UBR1-208ENST00000569066 GMCL1Q96IK5 515 aa8.88□□□□□ -0.99
UBR1-208ENST00000569066 TRERF1Q96PN7 1200 aa8.88□□□□□ -0.99
UBR1-208ENST00000569066 PHF24Q9UPV7 400 aa8.88□□□□□ -0.99
UBR1-208ENST00000569066 BMP4P12644 408 aa8.88□□□□□ -0.99
UBR1-208ENST00000569066 XRCC5P13010 732 aaKnown RBP8.88□□□□□ -0.99
UBR1-208ENST00000569066 EIF4A3P38919 411 aaKnown RBP8.88□□□□□ -0.99
UBR1-208ENST00000569066 LIG3P49916 1009 aa8.88□□□□□ -0.99
UBR1-208ENST00000569066 EAF1Q96JC9 268 aaPredicted RBP8.88□□□□□ -0.99
UBR1-208ENST00000569066 EFCC1Q9HA90 598 aa8.88□□□□□ -0.99
UBR1-208ENST00000569066 NECAB3Q96P71 396 aaPredicted RBP8.87□□□□□ -0.99
UBR1-208ENST00000569066 IRX2Q9BZI1 471 aaPredicted RBP8.87□□□□□ -0.99
UBR1-208ENST00000569066 LNPKQ9C0E8 428 aa8.87□□□□□ -0.99
UBR1-208ENST00000569066 UBP1Q9NZI7 540 aa8.87□□□□□ -0.99
UBR1-208ENST00000569066 GPN3Q9UHW5 284 aaPredicted RBP8.87□□□□□ -0.99
UBR1-208ENST00000569066 GHRHP01286 108 aa8.87□□□□□ -0.99
UBR1-208ENST00000569066 CRKP46108 304 aa8.87□□□□□ -0.99
UBR1-208ENST00000569066 NEUROD1Q13562 356 aa8.87□□□□□ -0.99
UBR1-208ENST00000569066 PERM1Q5SV97 790 aa8.87□□□□□ -0.99
UBR1-208ENST00000569066 ZNF296Q8WUU4 475 aaPredicted RBP8.87□□□□□ -0.99
UBR1-208ENST00000569066 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.87□□□□□ -0.99
UBR1-208ENST00000569066 LACRTQ9GZZ8 138 aa8.87□□□□□ -0.99
UBR1-208ENST00000569066 TRIM33Q9UPN9 1127 aa8.87□□□□□ -0.99
UBR1-208ENST00000569066 SMARCA5O60264 1052 aaPredicted RBP8.86□□□□□ -0.99
UBR1-208ENST00000569066 PF4P02776 101 aa8.86□□□□□ -0.99
UBR1-208ENST00000569066 RELL1Q8IUW5 271 aa8.86□□□□□ -0.99
UBR1-208ENST00000569066 ANKRD24Q8TF21 1146 aa8.86□□□□□ -0.99
UBR1-208ENST00000569066 PLD4Q96BZ4 506 aa8.86□□□□□ -0.99
UBR1-208ENST00000569066 TFE3P19532 575 aaPredicted RBP8.85□□□□□ -0.99
UBR1-208ENST00000569066 TTBK2Q6IQ55 1244 aa8.85□□□□□ -0.99
UBR1-208ENST00000569066 PMFBP1Q8TBY8 1022 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms