RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 ELNP15502 786 aa4.69□□□□□ -1.66
VPS35-208ENST00000568612 CDC27P30260 824 aa4.69□□□□□ -1.66
VPS35-208ENST00000568612 PDE3BQ13370 1112 aa4.69□□□□□ -1.66
VPS35-208ENST00000568612 SHISA2Q6UWI4 295 aa4.69□□□□□ -1.66
VPS35-208ENST00000568612 AEBP1Q8IUX7 1158 aa4.69□□□□□ -1.66
VPS35-208ENST00000568612 CEP120Q8N960 986 aa4.69□□□□□ -1.66
VPS35-208ENST00000568612 CHRDQ9H2X0 955 aa4.69□□□□□ -1.66
VPS35-208ENST00000568612 AMOTL2Q9Y2J4 779 aa4.69□□□□□ -1.66
VPS35-208ENST00000568612 C9orf172C9J069 976 aa4.68□□□□□ -1.66
VPS35-208ENST00000568612 EDN3P14138 238 aa4.68□□□□□ -1.66
VPS35-208ENST00000568612 PTPRAP18433 802 aa4.68□□□□□ -1.66
VPS35-208ENST00000568612 GATA4P43694 442 aa4.68□□□□□ -1.66
VPS35-208ENST00000568612 BAG6P46379 1132 aa4.68□□□□□ -1.66
VPS35-208ENST00000568612 ECM1Q16610 540 aa4.68□□□□□ -1.66
VPS35-208ENST00000568612 FAM117BQ6P1L5 589 aa4.68□□□□□ -1.66
VPS35-208ENST00000568612 DTWD1Q8N5C7 304 aa4.68□□□□□ -1.66
VPS35-208ENST00000568612 ASAP3Q8TDY4 903 aa4.68□□□□□ -1.66
VPS35-208ENST00000568612 OSMRQ99650 979 aa4.68□□□□□ -1.66
VPS35-208ENST00000568612 SH2B1Q9NRF2 756 aaPredicted RBP4.68□□□□□ -1.66
VPS35-208ENST00000568612 SALL4Q9UJQ4 1053 aa4.68□□□□□ -1.66
VPS35-208ENST00000568612 PPME1Q9Y570 386 aa4.68□□□□□ -1.66
VPS35-208ENST00000568612 CLSPNQ9HAW4 1339 aa4.68□□□□□ -1.66
VPS35-208ENST00000568612 PDE2AO00408 941 aaPredicted RBP4.67□□□□□ -1.66
VPS35-208ENST00000568612 MAPK1P28482 360 aa4.67□□□□□ -1.66
VPS35-208ENST00000568612 CABP4P57796 275 aa4.67□□□□□ -1.66
VPS35-208ENST00000568612 KCNA1Q09470 495 aa4.67□□□□□ -1.66
VPS35-208ENST00000568612 FBXO11Q86XK2 927 aa4.67□□□□□ -1.66
VPS35-208ENST00000568612 CACTIN-AS1Q8N1I8 211 aa4.67□□□□□ -1.66
VPS35-208ENST00000568612 HHIPQ96QV1 700 aa4.67□□□□□ -1.66
VPS35-208ENST00000568612 POP1Q99575 1024 aaKnown RBP4.67□□□□□ -1.66
VPS35-208ENST00000568612 CARD10Q9BWT7 1032 aa4.67□□□□□ -1.66
VPS35-208ENST00000568612 NIF3L1Q9GZT8 377 aa4.67□□□□□ -1.66
VPS35-208ENST00000568612 ZFYVE28Q9HCC9 887 aa4.67□□□□□ -1.66
VPS35-208ENST00000568612 GNEQ9Y223 722 aaKnown RBP4.67□□□□□ -1.66
VPS35-208ENST00000568612 DEAF1O75398 565 aaPredicted RBP4.66□□□□□ -1.66
VPS35-208ENST00000568612 PROCP04070 461 aa4.66□□□□□ -1.66
VPS35-208ENST00000568612 SELPP16109 830 aa4.66□□□□□ -1.66
VPS35-208ENST00000568612 EPHA1P21709 976 aa4.66□□□□□ -1.66
VPS35-208ENST00000568612 NRG1Q02297 640 aaPredicted RBP4.66□□□□□ -1.66
VPS35-208ENST00000568612 ORC1Q13415 861 aa4.66□□□□□ -1.66
VPS35-208ENST00000568612 DOC2BQ14184 412 aa4.66□□□□□ -1.66
VPS35-208ENST00000568612 SLC7A3Q8WY07 619 aa4.66□□□□□ -1.66
VPS35-208ENST00000568612 ZKSCAN3Q9BRR0 538 aa4.66□□□□□ -1.66
VPS35-208ENST00000568612 TRAIPQ9BWF2 469 aa4.66□□□□□ -1.66
VPS35-208ENST00000568612 MUC3BQ9H195 1237 aa4.66□□□□□ -1.66
VPS35-208ENST00000568612 LATS2Q9NRM7 1088 aa4.66□□□□□ -1.66
VPS35-208ENST00000568612 DZANK1Q9NVP4 752 aa4.66□□□□□ -1.66
VPS35-208ENST00000568612 DCTN4Q9UJW0 460 aa4.66□□□□□ -1.66
VPS35-208ENST00000568612 LOC100996750A0A140TA64 210 aa4.65□□□□□ -1.67
VPS35-208ENST00000568612 GPR182O15218 404 aa4.65□□□□□ -1.67
VPS35-208ENST00000568612 CPNE3O75131 537 aaKnown RBP4.65□□□□□ -1.67
VPS35-208ENST00000568612 FURINP09958 794 aa4.65□□□□□ -1.67
VPS35-208ENST00000568612 SETDB1Q15047 1291 aa4.65□□□□□ -1.67
VPS35-208ENST00000568612 USPL1Q5W0Q7 1092 aa4.65□□□□□ -1.67
VPS35-208ENST00000568612 IGF2-ASQ6U949 168 aa4.65□□□□□ -1.67
VPS35-208ENST00000568612 ADAMTSL4Q6UY14 1074 aa4.65□□□□□ -1.67
VPS35-208ENST00000568612 DCAF11Q8TEB1 546 aa4.65□□□□□ -1.67
VPS35-208ENST00000568612 LENG1Q96BZ8 264 aaPredicted RBP4.65□□□□□ -1.67
VPS35-208ENST00000568612 CITED4Q96RK1 184 aa4.65□□□□□ -1.67
VPS35-208ENST00000568612 FAM129BQ96TA1 746 aa4.65□□□□□ -1.67
VPS35-208ENST00000568612 KRTAP4-6Q9BYQ5 205 aa4.65□□□□□ -1.67
VPS35-208ENST00000568612 PATL2C9JE40 543 aaKnown RBP4.64□□□□□ -1.67
VPS35-208ENST00000568612 H3BRJ5 948 aa4.64□□□□□ -1.67
VPS35-208ENST00000568612 NFKBIEO00221 500 aa4.64□□□□□ -1.67
VPS35-208ENST00000568612 FSCN2O14926 492 aa4.64□□□□□ -1.67
VPS35-208ENST00000568612 GADD45BO75293 160 aaPredicted RBP4.64□□□□□ -1.67
VPS35-208ENST00000568612 IREB2P48200 963 aaKnown RBP4.64□□□□□ -1.67
VPS35-208ENST00000568612 ADGRE1Q14246 886 aa4.64□□□□□ -1.67
VPS35-208ENST00000568612 MBTPS1Q14703 1052 aa4.64□□□□□ -1.67
VPS35-208ENST00000568612 TAF7LQ5H9L4 462 aa4.64□□□□□ -1.67
VPS35-208ENST00000568612 TMC7Q7Z402 723 aa4.64□□□□□ -1.67
VPS35-208ENST00000568612 TXNRD3Q86VQ6 643 aa4.64□□□□□ -1.67
VPS35-208ENST00000568612 MAP4K3Q8IVH8 894 aa4.64□□□□□ -1.67
VPS35-208ENST00000568612 TMEM102Q8N9M5 508 aaPredicted RBP4.64□□□□□ -1.67
VPS35-208ENST00000568612 DMRTB1Q96MA1 342 aa4.64□□□□□ -1.67
VPS35-208ENST00000568612 EHD4Q9H223 541 aa4.64□□□□□ -1.67
VPS35-208ENST00000568612 SRA1Q9HD15 236 aaKnown RBP4.64□□□□□ -1.67
VPS35-208ENST00000568612 SEC31BQ9NQW1 1179 aa4.64□□□□□ -1.67
VPS35-208ENST00000568612 METTL12A8MUP2 240 aa4.63□□□□□ -1.67
VPS35-208ENST00000568612 DLL1O00548 723 aa4.63□□□□□ -1.67
VPS35-208ENST00000568612 EIF1AYO14602 144 aaKnown RBP4.63□□□□□ -1.67
VPS35-208ENST00000568612 ALX3O95076 343 aa4.63□□□□□ -1.67
VPS35-208ENST00000568612 CD68P34810 354 aaPredicted RBP4.63□□□□□ -1.67
VPS35-208ENST00000568612 ARL4DP49703 201 aa4.63□□□□□ -1.67
VPS35-208ENST00000568612 IKBKEQ14164 716 aa4.63□□□□□ -1.67
VPS35-208ENST00000568612 PEAR1Q5VY43 1037 aaPredicted RBP4.63□□□□□ -1.67
VPS35-208ENST00000568612 ACAD11Q709F0 780 aa4.63□□□□□ -1.67
VPS35-208ENST00000568612 AGGF1Q8N302 714 aaeCLIP4.63□□□□□ -1.67
VPS35-208ENST00000568612 GALNT11Q8NCW6 608 aa4.63□□□□□ -1.67
VPS35-208ENST00000568612 BSNDQ8WZ55 320 aa4.63□□□□□ -1.67
VPS35-208ENST00000568612 NXPE3Q969Y0 559 aa4.63□□□□□ -1.67
VPS35-208ENST00000568612 TP53INP1Q96A56 240 aa4.63□□□□□ -1.67
VPS35-208ENST00000568612 RBCK1Q9BYM8 510 aa4.63□□□□□ -1.67
VPS35-208ENST00000568612 ADAM19Q9H013 955 aa4.63□□□□□ -1.67
VPS35-208ENST00000568612 MRPL18Q9H0U6 180 aaKnown RBP4.63□□□□□ -1.67
VPS35-208ENST00000568612 LIN7BQ9HAP6 207 aa4.63□□□□□ -1.67
VPS35-208ENST00000568612 NPHS2Q9NP85 383 aa4.63□□□□□ -1.67
VPS35-208ENST00000568612 A0A1W2PP55 124 aa4.62□□□□□ -1.67
VPS35-208ENST00000568612 DDX3YO15523 660 aaKnown RBP4.62□□□□□ -1.67
VPS35-208ENST00000568612 GLB1P16278 677 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms