RNA–Protein interactions for RNA: ENST00000568301.1

COMMD4-223, Transcript of COMM domain containing 4, humanhuman

TSL 5

Gene COMMD4, Length 666 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-223ENST00000568301 USP17L1Q7RTZ2 530 aa19.31■□□□□ 0.68
COMMD4-223ENST00000568301 CTU1Q7Z7A3 348 aaKnown RBP19.31■□□□□ 0.68
COMMD4-223ENST00000568301 WWC1Q8IX03 1113 aa19.31■□□□□ 0.68
COMMD4-223ENST00000568301 TSR2Q969E8 191 aaKnown RBP19.31■□□□□ 0.68
COMMD4-223ENST00000568301 MINPP1Q9UNW1 487 aa19.31■□□□□ 0.68
COMMD4-223ENST00000568301 WTIPA6NIX2 430 aaPredicted RBP19.3■□□□□ 0.68
COMMD4-223ENST00000568301 NEURL1BA8MQ27 555 aa19.3■□□□□ 0.68
COMMD4-223ENST00000568301 H7C1W4 665 aa19.3■□□□□ 0.68
COMMD4-223ENST00000568301 NCBP3Q53F19 620 aaKnown RBP19.3■□□□□ 0.68
COMMD4-223ENST00000568301 REM2Q8IYK8 340 aaPredicted RBP19.3■□□□□ 0.68
COMMD4-223ENST00000568301 CACNA1FO60840 1977 aa19.3■□□□□ 0.68
COMMD4-223ENST00000568301 PAPPA2Q9BXP8 1791 aa19.29■□□□□ 0.68
COMMD4-223ENST00000568301 SLC4A2P04920 1241 aa19.29■□□□□ 0.68
COMMD4-223ENST00000568301 FKBP1BP68106 108 aa19.29■□□□□ 0.68
COMMD4-223ENST00000568301 CWF19L2Q2TBE0 894 aaKnown RBP19.29■□□□□ 0.68
COMMD4-223ENST00000568301 TWISTNBQ3B726 338 aaPredicted RBP19.29■□□□□ 0.68
COMMD4-223ENST00000568301 PRAMEF18Q5VWM3 479 aa19.29■□□□□ 0.68
COMMD4-223ENST00000568301 GREM2Q9H772 168 aa19.29■□□□□ 0.68
COMMD4-223ENST00000568301 IL16Q14005 1332 aa19.28■□□□□ 0.68
COMMD4-223ENST00000568301 PITPNM2Q9BZ72 1349 aa19.28■□□□□ 0.68
COMMD4-223ENST00000568301 CCDC184Q52MB2 194 aa19.28■□□□□ 0.68
COMMD4-223ENST00000568301 MED23Q9ULK4 1368 aa19.28■□□□□ 0.68
COMMD4-223ENST00000568301 UBE2Q2LH0YL09 131 aa19.27■□□□□ 0.68
COMMD4-223ENST00000568301 CCT4P50991 539 aaKnown RBP19.27■□□□□ 0.68
COMMD4-223ENST00000568301 G2E3Q7L622 706 aa19.27■□□□□ 0.68
COMMD4-223ENST00000568301 MXD3Q9BW11 206 aa19.27■□□□□ 0.68
COMMD4-223ENST00000568301 PCDH10Q9P2E7 1040 aa19.27■□□□□ 0.68
COMMD4-223ENST00000568301 SPEF2Q9C093 1822 aa19.27■□□□□ 0.68
COMMD4-223ENST00000568301 TBC1D8O95759 1140 aa19.26■□□□□ 0.67
COMMD4-223ENST00000568301 NBPF9Q3BBW0 867 aa19.26■□□□□ 0.67
COMMD4-223ENST00000568301 UBE3BQ7Z3V4 1068 aa19.26■□□□□ 0.67
COMMD4-223ENST00000568301 PLA2G12BQ9BX93 195 aa19.26■□□□□ 0.67
COMMD4-223ENST00000568301 HPS5Q9UPZ3 1129 aa19.26■□□□□ 0.67
COMMD4-223ENST00000568301 LEMD3Q9Y2U8 911 aa19.26■□□□□ 0.67
COMMD4-223ENST00000568301 IGHMBP2P38935 993 aaKnown RBP19.25■□□□□ 0.67
COMMD4-223ENST00000568301 MMP14P50281 582 aa19.25■□□□□ 0.67
COMMD4-223ENST00000568301 GCKRQ14397 625 aa19.25■□□□□ 0.67
COMMD4-223ENST00000568301 STRIP1Q5VSL9 837 aa19.25■□□□□ 0.67
COMMD4-223ENST00000568301 COA1Q9GZY4 146 aa19.25■□□□□ 0.67
COMMD4-223ENST00000568301 FLIIQ13045 1269 aa19.24■□□□□ 0.67
COMMD4-223ENST00000568301 DACT2Q5SW24 774 aa19.24■□□□□ 0.67
COMMD4-223ENST00000568301 OGFOD1Q8N543 542 aa19.24■□□□□ 0.67
COMMD4-223ENST00000568301 ZNF296Q8WUU4 475 aaPredicted RBP19.24■□□□□ 0.67
COMMD4-223ENST00000568301 ANKRD2Q9GZV1 360 aa19.24■□□□□ 0.67
COMMD4-223ENST00000568301 MYO3BQ8WXR4 1341 aa19.24■□□□□ 0.67
COMMD4-223ENST00000568301 CSF1RP07333 972 aa19.23■□□□□ 0.67
COMMD4-223ENST00000568301 LINS1Q8NG48 757 aa19.23■□□□□ 0.67
COMMD4-223ENST00000568301 MYH16Q9H6N6 1097 aa19.23■□□□□ 0.67
COMMD4-223ENST00000568301 HDAC9Q9UKV0 1011 aa19.23■□□□□ 0.67
COMMD4-223ENST00000568301 CENPFP49454 3210 aa19.23■□□□□ 0.67
COMMD4-223ENST00000568301 MKI67P46013 3256 aaKnown RBP19.23■□□□□ 0.67
COMMD4-223ENST00000568301 ZNF646O15015 1829 aaPredicted RBP19.23■□□□□ 0.67
COMMD4-223ENST00000568301 WNT10BO00744 389 aa19.22■□□□□ 0.67
COMMD4-223ENST00000568301 ITGA6P23229 1130 aa19.22■□□□□ 0.67
COMMD4-223ENST00000568301 TM4SF4P48230 202 aa19.22■□□□□ 0.67
COMMD4-223ENST00000568301 CASP7P55210 303 aa19.22■□□□□ 0.67
COMMD4-223ENST00000568301 MKRN3Q13064 507 aaKnown RBP19.22■□□□□ 0.67
COMMD4-223ENST00000568301 TTLL12Q14166 644 aaPredicted RBP19.22■□□□□ 0.67
COMMD4-223ENST00000568301 PKN2Q16513 984 aaKnown RBP19.22■□□□□ 0.67
COMMD4-223ENST00000568301 DNAAF4Q8WXU2 420 aa19.22■□□□□ 0.67
COMMD4-223ENST00000568301 FBXW7Q969H0 707 aa19.22■□□□□ 0.67
COMMD4-223ENST00000568301 HTTP42858 3142 aa19.22■□□□□ 0.67
COMMD4-223ENST00000568301 ZNF804BA4D1E1 1349 aa19.22■□□□□ 0.67
COMMD4-223ENST00000568301 FKBP5Q13451 457 aaPredicted RBP19.21■□□□□ 0.67
COMMD4-223ENST00000568301 TXNRD3Q86VQ6 643 aa19.21■□□□□ 0.67
COMMD4-223ENST00000568301 WDR63Q8IWG1 891 aa19.21■□□□□ 0.67
COMMD4-223ENST00000568301 MPHOSPH8Q99549 860 aa19.21■□□□□ 0.67
COMMD4-223ENST00000568301 VAMP4O75379 141 aa19.2■□□□□ 0.66
COMMD4-223ENST00000568301 TTLL5Q6EMB2 1281 aa19.2■□□□□ 0.66
COMMD4-223ENST00000568301 GPR25O00155 361 aa19.19■□□□□ 0.66
COMMD4-223ENST00000568301 PRPF38BQ5VTL8 546 aaKnown RBP19.19■□□□□ 0.66
COMMD4-223ENST00000568301 FANCIQ9NVI1 1328 aa19.19■□□□□ 0.66
COMMD4-223ENST00000568301 SASH1O94885 1247 aa19.18■□□□□ 0.66
COMMD4-223ENST00000568301 PTPN12Q05209 780 aaKnown RBP19.18■□□□□ 0.66
COMMD4-223ENST00000568301 PRKG1Q13976 671 aa19.18■□□□□ 0.66
COMMD4-223ENST00000568301 R3HDMLQ9H3Y0 253 aa19.18■□□□□ 0.66
COMMD4-223ENST00000568301 NF2P35240 595 aa19.17■□□□□ 0.66
COMMD4-223ENST00000568301 CHRNDQ07001 517 aa19.17■□□□□ 0.66
COMMD4-223ENST00000568301 MRS2Q9HD23 443 aa19.17■□□□□ 0.66
COMMD4-223ENST00000568301 ANKRD18BA2A2Z9 1011 aa19.16■□□□□ 0.66
COMMD4-223ENST00000568301 KLRK1P26718 216 aa19.16■□□□□ 0.66
COMMD4-223ENST00000568301 KCNJ4P48050 445 aa19.16■□□□□ 0.66
COMMD4-223ENST00000568301 NOM1Q5C9Z4 860 aaKnown RBP19.16■□□□□ 0.66
COMMD4-223ENST00000568301 BRCA2P51587 3418 aa19.15■□□□□ 0.66
COMMD4-223ENST00000568301 GTF2IP78347 998 aa19.15■□□□□ 0.66
COMMD4-223ENST00000568301 EXOSC9Q06265 439 aaKnown RBP19.15■□□□□ 0.66
COMMD4-223ENST00000568301 SREBF2Q12772 1141 aa19.15■□□□□ 0.66
COMMD4-223ENST00000568301 FBXO46Q6PJ61 603 aaPredicted RBP19.15■□□□□ 0.66
COMMD4-223ENST00000568301 C15orf52Q6ZUT6 534 aaKnown RBP19.15■□□□□ 0.66
COMMD4-223ENST00000568301 ARMC9Q7Z3E5 817 aa19.15■□□□□ 0.66
COMMD4-223ENST00000568301 KIAA0825Q8IV33 1275 aa19.15■□□□□ 0.66
COMMD4-223ENST00000568301 ZBED3Q96IU2 234 aaPredicted RBP19.15■□□□□ 0.66
COMMD4-223ENST00000568301 CD209Q9NNX6 404 aa19.15■□□□□ 0.66
COMMD4-223ENST00000568301 FZD1Q9UP38 647 aa19.15■□□□□ 0.66
COMMD4-223ENST00000568301 FOXO4P98177 505 aa19.14■□□□□ 0.65
COMMD4-223ENST00000568301 IFIT5Q13325 482 aaKnown RBP19.14■□□□□ 0.65
COMMD4-223ENST00000568301 BEND3Q5T5X7 828 aa19.14■□□□□ 0.65
COMMD4-223ENST00000568301 LDLRAD1Q5T700 205 aa19.14■□□□□ 0.65
COMMD4-223ENST00000568301 APOBEC3FQ8IUX4 373 aaKnown RBP19.14■□□□□ 0.65
COMMD4-223ENST00000568301 CFHR5Q9BXR6 569 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms