RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 IFT57Q9NWB7 429 aa14.52□□□□□ -0.09
CLN3-226ENST00000567160 ANKIB1Q9P2G1 1089 aa14.52□□□□□ -0.09
CLN3-226ENST00000567160 TSPYL4Q9UJ04 414 aa14.52□□□□□ -0.09
CLN3-226ENST00000567160 GGA1Q9UJY5 639 aa14.52□□□□□ -0.09
CLN3-226ENST00000567160 PTPN22Q9Y2R2 807 aa14.52□□□□□ -0.09
CLN3-226ENST00000567160 BRCA2P51587 3418 aa14.51□□□□□ -0.09
CLN3-226ENST00000567160 RPS8P62241 208 aaKnown RBP14.51□□□□□ -0.09
CLN3-226ENST00000567160 PROSER3Q2NL68 480 aa14.51□□□□□ -0.09
CLN3-226ENST00000567160 PRAMEF18Q5VWM3 479 aa14.51□□□□□ -0.09
CLN3-226ENST00000567160 SPRYD7Q5W111 196 aa14.51□□□□□ -0.09
CLN3-226ENST00000567160 OGFOD1Q8N543 542 aa14.51□□□□□ -0.09
CLN3-226ENST00000567160 SLC17A8Q8NDX2 589 aa14.51□□□□□ -0.09
CLN3-226ENST00000567160 XAGE3Q8WTP9 111 aa14.51□□□□□ -0.09
CLN3-226ENST00000567160 USP17L3A6NCW0 530 aa14.5□□□□□ -0.09
CLN3-226ENST00000567160 USP17L4A6NCW7 530 aa14.5□□□□□ -0.09
CLN3-226ENST00000567160 CHL1O00533 1208 aa14.5□□□□□ -0.09
CLN3-226ENST00000567160 ANXA1P04083 346 aa14.5□□□□□ -0.09
CLN3-226ENST00000567160 ZNF853P0CG23 659 aa14.5□□□□□ -0.09
CLN3-226ENST00000567160 PTPN12Q05209 780 aaKnown RBP14.5□□□□□ -0.09
CLN3-226ENST00000567160 SLFN5Q08AF3 891 aa14.5□□□□□ -0.09
CLN3-226ENST00000567160 USP17L1Q7RTZ2 530 aa14.5□□□□□ -0.09
CLN3-226ENST00000567160 IFNL1Q8IU54 200 aa14.5□□□□□ -0.09
CLN3-226ENST00000567160 GMLQ99445 158 aa14.5□□□□□ -0.09
CLN3-226ENST00000567160 EFCC1Q9HA90 598 aa14.5□□□□□ -0.09
CLN3-226ENST00000567160 MBIPQ9NS73 344 aa14.5□□□□□ -0.09
CLN3-226ENST00000567160 SCAF8Q9UPN6 1271 aaKnown RBP14.5□□□□□ -0.09
CLN3-226ENST00000567160 SZT2Q5T011 3432 aa14.5□□□□□ -0.09
CLN3-226ENST00000567160 FANCIQ9NVI1 1328 aa14.49□□□□□ -0.09
CLN3-226ENST00000567160 E9PSI1 815 aa14.49□□□□□ -0.09
CLN3-226ENST00000567160 HSP90B1P14625 803 aaKnown RBP14.49□□□□□ -0.09
CLN3-226ENST00000567160 OTUD7BQ6GQQ9 843 aa14.49□□□□□ -0.09
CLN3-226ENST00000567160 PODNQ7Z5L7 613 aa14.49□□□□□ -0.09
CLN3-226ENST00000567160 NBPF11Q86T75 865 aa14.49□□□□□ -0.09
CLN3-226ENST00000567160 FAM89AQ96GI7 184 aa14.49□□□□□ -0.09
CLN3-226ENST00000567160 MYH16Q9H6N6 1097 aa14.49□□□□□ -0.09
CLN3-226ENST00000567160 LAMB1P07942 1786 aa14.48□□□□□ -0.09
CLN3-226ENST00000567160 ZBTB48P10074 688 aaPredicted RBP14.48□□□□□ -0.09
CLN3-226ENST00000567160 MMP14P50281 582 aa14.48□□□□□ -0.09
CLN3-226ENST00000567160 ARHGEF6Q15052 776 aa14.48□□□□□ -0.09
CLN3-226ENST00000567160 NBPF9Q3BBW0 867 aa14.48□□□□□ -0.09
CLN3-226ENST00000567160 APOBEC3FQ8IUX4 373 aaKnown RBP14.48□□□□□ -0.09
CLN3-226ENST00000567160 CD99L2Q8TCZ2 262 aa14.48□□□□□ -0.09
CLN3-226ENST00000567160 SLC10A4Q96EP9 437 aa14.48□□□□□ -0.09
CLN3-226ENST00000567160 MYO3BQ8WXR4 1341 aa14.47□□□□□ -0.09
CLN3-226ENST00000567160 H0YGN5 161 aa14.47□□□□□ -0.09
CLN3-226ENST00000567160 PRKG1Q13976 671 aa14.47□□□□□ -0.09
CLN3-226ENST00000567160 SLC4A8Q2Y0W8 1093 aa14.47□□□□□ -0.09
CLN3-226ENST00000567160 LDLRAD1Q5T700 205 aa14.47□□□□□ -0.09
CLN3-226ENST00000567160 BABAM1Q9NWV8 329 aa14.47□□□□□ -0.09
CLN3-226ENST00000567160 ANGEL1Q9UNK9 670 aaKnown RBP14.47□□□□□ -0.09
CLN3-226ENST00000567160 WNT10BO00744 389 aa14.46□□□□□ -0.09
CLN3-226ENST00000567160 IRS4O14654 1257 aaPredicted RBP14.46□□□□□ -0.09
CLN3-226ENST00000567160 SLC9C1Q4G0N8 1177 aa14.46□□□□□ -0.09
CLN3-226ENST00000567160 OTUD5Q96G74 571 aa14.46□□□□□ -0.09
CLN3-226ENST00000567160 ZNF333Q96JL9 665 aa14.46□□□□□ -0.09
CLN3-226ENST00000567160 COL4A1P02462 1669 aa14.46□□□□□ -0.1
CLN3-226ENST00000567160 XDHP47989 1333 aa14.45□□□□□ -0.1
CLN3-226ENST00000567160 COL1A1P02452 1464 aaPredicted RBP14.45□□□□□ -0.1
CLN3-226ENST00000567160 SP3Q02447 781 aa14.45□□□□□ -0.1
CLN3-226ENST00000567160 KRT24Q2M2I5 525 aa14.45□□□□□ -0.1
CLN3-226ENST00000567160 DUSP27Q5VZP5 1158 aa14.45□□□□□ -0.1
CLN3-226ENST00000567160 CHRDL2Q6WN34 429 aa14.45□□□□□ -0.1
CLN3-226ENST00000567160 TRMT2AQ8IZ69 625 aaKnown RBP14.45□□□□□ -0.1
CLN3-226ENST00000567160 PLBD2Q8NHP8 589 aa14.45□□□□□ -0.1
CLN3-226ENST00000567160 ZNF428Q96B54 188 aa14.45□□□□□ -0.1
CLN3-226ENST00000567160 UNCXA6NJT0 531 aa14.44□□□□□ -0.1
CLN3-226ENST00000567160 IGF2BP3O00425 579 aaKnown RBP eCLIP14.44□□□□□ -0.1
CLN3-226ENST00000567160 ATP2B4P23634 1241 aa14.44□□□□□ -0.1
CLN3-226ENST00000567160 EXOSC9Q06265 439 aaKnown RBP14.44□□□□□ -0.1
CLN3-226ENST00000567160 CRHR2Q13324 411 aa14.44□□□□□ -0.1
CLN3-226ENST00000567160 RTL5Q5HYW3 569 aaPredicted RBP14.44□□□□□ -0.1
CLN3-226ENST00000567160 ISCA1Q9BUE6 129 aa14.44□□□□□ -0.1
CLN3-226ENST00000567160 CACNA1FO60840 1977 aa14.43□□□□□ -0.1
CLN3-226ENST00000567160 CUL9Q8IWT3 2517 aa14.43□□□□□ -0.1
CLN3-226ENST00000567160 ELL2O00472 640 aaPredicted RBP14.43□□□□□ -0.1
CLN3-226ENST00000567160 PPP1R12BO60237 982 aaPredicted RBP14.43□□□□□ -0.1
CLN3-226ENST00000567160 CCDC152Q4G0S7 254 aa14.43□□□□□ -0.1
CLN3-226ENST00000567160 ANKRD13DQ6ZTN6 518 aa14.43□□□□□ -0.1
CLN3-226ENST00000567160 C8orf58Q8NAV2 365 aa14.43□□□□□ -0.1
CLN3-226ENST00000567160 WNK4Q96J92 1243 aa14.43□□□□□ -0.1
CLN3-226ENST00000567160 ATP5J2-PTCD1G3V325 749 aa14.42□□□□□ -0.1
CLN3-226ENST00000567160 SASH1O94885 1247 aa14.42□□□□□ -0.1
CLN3-226ENST00000567160 MAP3K11Q16584 847 aa14.42□□□□□ -0.1
CLN3-226ENST00000567160 DACT2Q5SW24 774 aa14.42□□□□□ -0.1
CLN3-226ENST00000567160 STRIP1Q5VSL9 837 aa14.42□□□□□ -0.1
CLN3-226ENST00000567160 TSPYL6Q8N831 410 aa14.42□□□□□ -0.1
CLN3-226ENST00000567160 FBXW7Q969H0 707 aa14.42□□□□□ -0.1
CLN3-226ENST00000567160 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.42□□□□□ -0.1
CLN3-226ENST00000567160 TRIM28Q13263 835 aaKnown RBP14.41□□□□□ -0.1
CLN3-226ENST00000567160 ANKRD18AQ8IVF6 992 aa14.41□□□□□ -0.1
CLN3-226ENST00000567160 SEC31BQ9NQW1 1179 aa14.41□□□□□ -0.1
CLN3-226ENST00000567160 RBM27Q9P2N5 1060 aaKnown RBP14.41□□□□□ -0.1
CLN3-226ENST00000567160 PPP2R3BQ9Y5P8 575 aa14.41□□□□□ -0.1
CLN3-226ENST00000567160 MED23Q9ULK4 1368 aa14.41□□□□□ -0.1
CLN3-226ENST00000567160 TWISTNBQ3B726 338 aaPredicted RBP14.4□□□□□ -0.1
CLN3-226ENST00000567160 ZBTB38Q8NAP3 1195 aaPredicted RBP14.4□□□□□ -0.1
CLN3-226ENST00000567160 DPF3Q92784 378 aa14.4□□□□□ -0.1
CLN3-226ENST00000567160 DEFB129Q9H1M3 183 aa14.4□□□□□ -0.1
CLN3-226ENST00000567160 CHPF2Q9P2E5 772 aa14.4□□□□□ -0.1
CLN3-226ENST00000567160 SUPT20HL1Q3ZLR7 823 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms