RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 USP17L3A6NCW0 530 aa16.75■□□□□ 0.27
CLK3-218ENST00000566926 USP17L4A6NCW7 530 aa16.75■□□□□ 0.27
CLK3-218ENST00000566926 PLIN1O60240 522 aa16.75■□□□□ 0.27
CLK3-218ENST00000566926 TAF5LO75529 589 aa16.75■□□□□ 0.27
CLK3-218ENST00000566926 USP17L1Q7RTZ2 530 aa16.75■□□□□ 0.27
CLK3-218ENST00000566926 AGBL3Q8NEM8 1001 aa16.75■□□□□ 0.27
CLK3-218ENST00000566926 HELBQ8NG08 1087 aaPredicted RBP16.75■□□□□ 0.27
CLK3-218ENST00000566926 ZBTB12Q9Y330 459 aaPredicted RBP16.75■□□□□ 0.27
CLK3-218ENST00000566926 TRPM7Q96QT4 1865 aa16.75■□□□□ 0.27
CLK3-218ENST00000566926 ZNF609O15014 1411 aa16.74■□□□□ 0.27
CLK3-218ENST00000566926 UBE4AQ14139 1066 aa16.74■□□□□ 0.27
CLK3-218ENST00000566926 RSBN1LQ6PCB5 846 aaPredicted RBP16.74■□□□□ 0.27
CLK3-218ENST00000566926 MICALL2Q8IY33 904 aa16.74■□□□□ 0.27
CLK3-218ENST00000566926 ZC3H15Q8WU90 426 aaKnown RBP16.74■□□□□ 0.27
CLK3-218ENST00000566926 KCNQ5Q9NR82 932 aa16.74■□□□□ 0.27
CLK3-218ENST00000566926 RIPOR2Q9Y4F9 1068 aa16.74■□□□□ 0.27
CLK3-218ENST00000566926 WTIPA6NIX2 430 aaPredicted RBP16.73■□□□□ 0.27
CLK3-218ENST00000566926 STRIP1Q5VSL9 837 aa16.73■□□□□ 0.27
CLK3-218ENST00000566926 ZNF804AQ7Z570 1209 aa16.73■□□□□ 0.27
CLK3-218ENST00000566926 FTSJ3Q8IY81 847 aaKnown RBP16.73■□□□□ 0.27
CLK3-218ENST00000566926 CNTROBQ8N137 903 aa16.73■□□□□ 0.27
CLK3-218ENST00000566926 CLUAP1Q96AJ1 413 aa16.73■□□□□ 0.27
CLK3-218ENST00000566926 FBXO3Q9UK99 471 aa16.73■□□□□ 0.27
CLK3-218ENST00000566926 MYO3BQ8WXR4 1341 aa16.72■□□□□ 0.27
CLK3-218ENST00000566926 MMP14P50281 582 aa16.72■□□□□ 0.27
CLK3-218ENST00000566926 AAMPQ13685 434 aa16.72■□□□□ 0.27
CLK3-218ENST00000566926 METTL24Q5JXM2 366 aa16.72■□□□□ 0.27
CLK3-218ENST00000566926 TXNRD3Q86VQ6 643 aa16.72■□□□□ 0.27
CLK3-218ENST00000566926 MEIS3Q99687 375 aa16.72■□□□□ 0.27
CLK3-218ENST00000566926 PUS3Q9BZE2 481 aaKnown RBP16.72■□□□□ 0.27
CLK3-218ENST00000566926 LRRFIP2Q9Y608 721 aaKnown RBP16.72■□□□□ 0.27
CLK3-218ENST00000566926 ITGBL1O95965 494 aaPredicted RBP16.71■□□□□ 0.27
CLK3-218ENST00000566926 MAP1SQ66K74 1059 aaPredicted RBP16.71■□□□□ 0.27
CLK3-218ENST00000566926 TTLL5Q6EMB2 1281 aa16.71■□□□□ 0.27
CLK3-218ENST00000566926 DZIP1LQ8IYY4 767 aaKnown RBP16.71■□□□□ 0.27
CLK3-218ENST00000566926 CD209Q9NNX6 404 aa16.71■□□□□ 0.27
CLK3-218ENST00000566926 PASKQ96RG2 1323 aa16.7■□□□□ 0.26
CLK3-218ENST00000566926 ZNF646O15015 1829 aaPredicted RBP16.7■□□□□ 0.26
CLK3-218ENST00000566926 EYA2O00167 538 aa16.7■□□□□ 0.26
CLK3-218ENST00000566926 GNAI2P04899 355 aa16.7■□□□□ 0.26
CLK3-218ENST00000566926 KLRK1P26718 216 aa16.7■□□□□ 0.26
CLK3-218ENST00000566926 FBXW7Q969H0 707 aa16.7■□□□□ 0.26
CLK3-218ENST00000566926 PGAP2Q9UHJ9 254 aa16.7■□□□□ 0.26
CLK3-218ENST00000566926 IRS2Q9Y4H2 1338 aa16.7■□□□□ 0.26
CLK3-218ENST00000566926 SNAP23O00161 211 aa16.69■□□□□ 0.26
CLK3-218ENST00000566926 PDE8BO95263 885 aa16.69■□□□□ 0.26
CLK3-218ENST00000566926 USP17L8P0C7I0 530 aa16.69■□□□□ 0.26
CLK3-218ENST00000566926 IL1R1P14778 569 aa16.69■□□□□ 0.26
CLK3-218ENST00000566926 RFX5P48382 616 aaPredicted RBP16.69■□□□□ 0.26
CLK3-218ENST00000566926 PTPN12Q05209 780 aaKnown RBP16.69■□□□□ 0.26
CLK3-218ENST00000566926 LRRC24Q50LG9 513 aa16.69■□□□□ 0.26
CLK3-218ENST00000566926 DACT2Q5SW24 774 aa16.69■□□□□ 0.26
CLK3-218ENST00000566926 OGFOD1Q8N543 542 aa16.69■□□□□ 0.26
CLK3-218ENST00000566926 TMEM57Q8N5G2 664 aa16.69■□□□□ 0.26
CLK3-218ENST00000566926 CREBZFQ9NS37 354 aa16.69■□□□□ 0.26
CLK3-218ENST00000566926 CIAO1O76071 339 aa16.68■□□□□ 0.26
CLK3-218ENST00000566926 HIBADHP31937 336 aaKnown RBP16.68■□□□□ 0.26
CLK3-218ENST00000566926 ZNF280AP59817 542 aaPredicted RBP16.68■□□□□ 0.26
CLK3-218ENST00000566926 GTF2IP78347 998 aa16.68■□□□□ 0.26
CLK3-218ENST00000566926 TBC1D10BQ4KMP7 808 aaPredicted RBP16.68■□□□□ 0.26
CLK3-218ENST00000566926 CAVIN4Q5BKX8 364 aa16.68■□□□□ 0.26
CLK3-218ENST00000566926 SAMD7Q7Z3H4 446 aa16.68■□□□□ 0.26
CLK3-218ENST00000566926 KLHDC4Q8TBB5 520 aa16.68■□□□□ 0.26
CLK3-218ENST00000566926 TRPM4Q8TD43 1214 aa16.68■□□□□ 0.26
CLK3-218ENST00000566926 GMLQ99445 158 aa16.68■□□□□ 0.26
CLK3-218ENST00000566926 CHMP4BQ9H444 224 aaKnown RBP16.68■□□□□ 0.26
CLK3-218ENST00000566926 TNNQ9UQP3 1299 aa16.68■□□□□ 0.26
CLK3-218ENST00000566926 MYH13Q9UKX3 1938 aa16.68■□□□□ 0.26
CLK3-218ENST00000566926 SHTN1A0MZ66 631 aa16.67■□□□□ 0.26
CLK3-218ENST00000566926 TMEM88BA6NKF7 163 aa16.67■□□□□ 0.26
CLK3-218ENST00000566926 IFIT1P09914 478 aaKnown RBP16.67■□□□□ 0.26
CLK3-218ENST00000566926 HIRAP54198 1017 aaPredicted RBP16.67■□□□□ 0.26
CLK3-218ENST00000566926 MTX1Q13505 466 aa16.67■□□□□ 0.26
CLK3-218ENST00000566926 KIF4BQ2VIQ3 1234 aa16.67■□□□□ 0.26
CLK3-218ENST00000566926 RBM26Q5T8P6 1007 aaKnown RBP16.67■□□□□ 0.26
CLK3-218ENST00000566926 CDC37L1Q7L3B6 337 aa16.67■□□□□ 0.26
CLK3-218ENST00000566926 VPS37DQ86XT2 251 aa16.67■□□□□ 0.26
CLK3-218ENST00000566926 PPP4R2Q9NY27 417 aa16.67■□□□□ 0.26
CLK3-218ENST00000566926 HDAC9Q9UKV0 1011 aa16.67■□□□□ 0.26
CLK3-218ENST00000566926 SRGAP3O43295 1099 aa16.66■□□□□ 0.26
CLK3-218ENST00000566926 SASH1O94885 1247 aa16.66■□□□□ 0.26
CLK3-218ENST00000566926 IL15P40933 162 aaPredicted RBP16.66■□□□□ 0.26
CLK3-218ENST00000566926 FKBP1AP62942 108 aaKnown RBP16.66■□□□□ 0.26
CLK3-218ENST00000566926 IRX6P78412 446 aaPredicted RBP16.66■□□□□ 0.26
CLK3-218ENST00000566926 PUM3Q15397 648 aaKnown RBP16.66■□□□□ 0.26
CLK3-218ENST00000566926 ITPRIPQ8IWB1 547 aa16.66■□□□□ 0.26
CLK3-218ENST00000566926 VGLL2Q8N8G2 317 aa16.66■□□□□ 0.26
CLK3-218ENST00000566926 DCPSQ96C86 337 aaKnown RBP16.66■□□□□ 0.26
CLK3-218ENST00000566926 COPRSQ9NQ92 184 aa16.66■□□□□ 0.26
CLK3-218ENST00000566926 CEP126Q9P2H0 1117 aa16.66■□□□□ 0.26
CLK3-218ENST00000566926 CEP350Q5VT06 3117 aa16.65■□□□□ 0.26
CLK3-218ENST00000566926 SLC5A1P13866 664 aa16.65■□□□□ 0.26
CLK3-218ENST00000566926 HTRA3P83110 453 aa16.65■□□□□ 0.26
CLK3-218ENST00000566926 DNAJC5GQ8N7S2 189 aa16.65■□□□□ 0.26
CLK3-218ENST00000566926 KLRG1Q96E93 195 aa16.65■□□□□ 0.26
CLK3-218ENST00000566926 FAM84BQ96KN1 310 aaPredicted RBP16.65■□□□□ 0.26
CLK3-218ENST00000566926 SIL1Q9H173 461 aa16.65■□□□□ 0.26
CLK3-218ENST00000566926 MYOZ2Q9NPC6 264 aa16.65■□□□□ 0.26
CLK3-218ENST00000566926 GYG1P46976 350 aa16.64■□□□□ 0.25
CLK3-218ENST00000566926 ATG9AQ7Z3C6 839 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms