RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 HUNKP57058 714 aa18.96■□□□□ 0.63
CLN3-222ENST00000566083 OGFOD1Q8N543 542 aa18.96■□□□□ 0.63
CLN3-222ENST00000566083 GBA2Q9HCG7 927 aaPredicted RBP18.96■□□□□ 0.63
CLN3-222ENST00000566083 ANKRD18BA2A2Z9 1011 aa18.95■□□□□ 0.62
CLN3-222ENST00000566083 EGFRP00533 1210 aa18.95■□□□□ 0.62
CLN3-222ENST00000566083 CASP7P55210 303 aa18.95■□□□□ 0.62
CLN3-222ENST00000566083 STRIP1Q5VSL9 837 aa18.95■□□□□ 0.62
CLN3-222ENST00000566083 FAM9BQ8IZU0 186 aa18.95■□□□□ 0.62
CLN3-222ENST00000566083 GMLQ99445 158 aa18.95■□□□□ 0.62
CLN3-222ENST00000566083 CCDC102AQ96A19 550 aa18.94■□□□□ 0.62
CLN3-222ENST00000566083 MYOZ2Q9NPC6 264 aa18.94■□□□□ 0.62
CLN3-222ENST00000566083 GGA3Q9NZ52 723 aa18.94■□□□□ 0.62
CLN3-222ENST00000566083 PITPNM2Q9BZ72 1349 aa18.94■□□□□ 0.62
CLN3-222ENST00000566083 POLR2AP24928 1970 aaKnown RBP18.94■□□□□ 0.62
CLN3-222ENST00000566083 ZNF804BA4D1E1 1349 aa18.93■□□□□ 0.62
CLN3-222ENST00000566083 KCNJ4P48050 445 aa18.93■□□□□ 0.62
CLN3-222ENST00000566083 IFIT5Q13325 482 aaKnown RBP18.93■□□□□ 0.62
CLN3-222ENST00000566083 SCARF1Q14162 830 aa18.93■□□□□ 0.62
CLN3-222ENST00000566083 FAM161AQ3B820 660 aa18.93■□□□□ 0.62
CLN3-222ENST00000566083 PSME4Q14997 1843 aa18.93■□□□□ 0.62
CLN3-222ENST00000566083 AOC2O75106 756 aa18.92■□□□□ 0.62
CLN3-222ENST00000566083 FKBP1BP68106 108 aa18.92■□□□□ 0.62
CLN3-222ENST00000566083 BEND3Q5T5X7 828 aa18.92■□□□□ 0.62
CLN3-222ENST00000566083 RGMBQ6NW40 437 aa18.92■□□□□ 0.62
CLN3-222ENST00000566083 ALDH1L1O75891 902 aa18.91■□□□□ 0.62
CLN3-222ENST00000566083 ADM5C9JUS6 153 aa18.91■□□□□ 0.62
CLN3-222ENST00000566083 DACT2Q5SW24 774 aa18.91■□□□□ 0.62
CLN3-222ENST00000566083 ANGEL2Q5VTE6 544 aaKnown RBP18.91■□□□□ 0.62
CLN3-222ENST00000566083 HDAC9Q9UKV0 1011 aa18.91■□□□□ 0.62
CLN3-222ENST00000566083 CHRNDQ07001 517 aa18.9■□□□□ 0.62
CLN3-222ENST00000566083 TTLL5Q6EMB2 1281 aa18.9■□□□□ 0.62
CLN3-222ENST00000566083 REM2Q8IYK8 340 aaPredicted RBP18.9■□□□□ 0.62
CLN3-222ENST00000566083 SPINK5Q9NQ38 1064 aaPredicted RBP18.9■□□□□ 0.62
CLN3-222ENST00000566083 C9orf78Q9NZ63 289 aaPredicted RBP18.9■□□□□ 0.62
CLN3-222ENST00000566083 F6X3S4 739 aa18.89■□□□□ 0.61
CLN3-222ENST00000566083 GRM8O00222 908 aa18.89■□□□□ 0.61
CLN3-222ENST00000566083 ZNF157P51786 506 aaPredicted RBP18.89■□□□□ 0.61
CLN3-222ENST00000566083 CCDC57Q2TAC2 916 aa18.89■□□□□ 0.61
CLN3-222ENST00000566083 C15orf52Q6ZUT6 534 aaKnown RBP18.89■□□□□ 0.61
CLN3-222ENST00000566083 CDCA5Q96FF9 252 aa18.89■□□□□ 0.61
CLN3-222ENST00000566083 CHMP3Q9Y3E7 222 aa18.89■□□□□ 0.61
CLN3-222ENST00000566083 FOXO4P98177 505 aa18.88■□□□□ 0.61
CLN3-222ENST00000566083 FBXW7Q969H0 707 aa18.88■□□□□ 0.61
CLN3-222ENST00000566083 SRCIN1Q9C0H9 1055 aa18.88■□□□□ 0.61
CLN3-222ENST00000566083 WTIPA6NIX2 430 aaPredicted RBP18.87■□□□□ 0.61
CLN3-222ENST00000566083 TAF7LQ5H9L4 462 aa18.87■□□□□ 0.61
CLN3-222ENST00000566083 NF2P35240 595 aa18.86■□□□□ 0.61
CLN3-222ENST00000566083 LMBR1LQ6UX01 489 aa18.86■□□□□ 0.61
CLN3-222ENST00000566083 ZNF804AQ7Z570 1209 aa18.86■□□□□ 0.61
CLN3-222ENST00000566083 TXNRD3Q86VQ6 643 aa18.86■□□□□ 0.61
CLN3-222ENST00000566083 SAGE1Q9NXZ1 904 aa18.86■□□□□ 0.61
CLN3-222ENST00000566083 SPEF2Q9C093 1822 aa18.86■□□□□ 0.61
CLN3-222ENST00000566083 ASTN2O75129 1339 aaPredicted RBP18.86■□□□□ 0.61
CLN3-222ENST00000566083 FAM155AB1AL88 458 aaPredicted RBP18.85■□□□□ 0.61
CLN3-222ENST00000566083 SLC4A10Q6U841 1118 aa18.85■□□□□ 0.61
CLN3-222ENST00000566083 DLK2Q6UY11 383 aa18.85■□□□□ 0.61
CLN3-222ENST00000566083 LDHAL6AQ6ZMR3 332 aa18.85■□□□□ 0.61
CLN3-222ENST00000566083 CD209Q9NNX6 404 aa18.85■□□□□ 0.61
CLN3-222ENST00000566083 ZNF521Q96K83 1311 aa18.85■□□□□ 0.61
CLN3-222ENST00000566083 WNT10BO00744 389 aa18.84■□□□□ 0.61
CLN3-222ENST00000566083 GTF2IP78347 998 aa18.84■□□□□ 0.61
CLN3-222ENST00000566083 APOBEC3FQ8IUX4 373 aaKnown RBP18.84■□□□□ 0.61
CLN3-222ENST00000566083 E9PSI1 815 aa18.83■□□□□ 0.61
CLN3-222ENST00000566083 SLC10A3P09131 477 aa18.83■□□□□ 0.61
CLN3-222ENST00000566083 NBPF9Q3BBW0 867 aa18.83■□□□□ 0.61
CLN3-222ENST00000566083 ABHD8Q96I13 439 aa18.83■□□□□ 0.61
CLN3-222ENST00000566083 CNNM1Q9NRU3 951 aa18.83■□□□□ 0.61
CLN3-222ENST00000566083 FKBP1AP62942 108 aaKnown RBP18.83■□□□□ 0.6
CLN3-222ENST00000566083 KIF23Q02241 960 aaPredicted RBP18.83■□□□□ 0.6
CLN3-222ENST00000566083 PTPRCP08575 1304 aa18.82■□□□□ 0.6
CLN3-222ENST00000566083 TAF5LO75529 589 aa18.82■□□□□ 0.6
CLN3-222ENST00000566083 IL1R1P14778 569 aa18.82■□□□□ 0.6
CLN3-222ENST00000566083 KIAA0825Q8IV33 1275 aa18.82■□□□□ 0.6
CLN3-222ENST00000566083 MXD3Q9BW11 206 aa18.82■□□□□ 0.6
CLN3-222ENST00000566083 PAPPA2Q9BXP8 1791 aa18.81■□□□□ 0.6
CLN3-222ENST00000566083 KLRK1P26718 216 aa18.81■□□□□ 0.6
CLN3-222ENST00000566083 TSKSQ9UJT2 592 aa18.81■□□□□ 0.6
CLN3-222ENST00000566083 UTYO14607 1347 aa18.8■□□□□ 0.6
CLN3-222ENST00000566083 MYO1BO43795 1136 aa18.8■□□□□ 0.6
CLN3-222ENST00000566083 UBE4AQ14139 1066 aa18.8■□□□□ 0.6
CLN3-222ENST00000566083 DLGAP5Q15398 846 aa18.8■□□□□ 0.6
CLN3-222ENST00000566083 EPHA10Q5JZY3 1008 aa18.8■□□□□ 0.6
CLN3-222ENST00000566083 MTMR14Q8NCE2 650 aa18.8■□□□□ 0.6
CLN3-222ENST00000566083 HELBQ8NG08 1087 aaPredicted RBP18.8■□□□□ 0.6
CLN3-222ENST00000566083 ZIC5Q96T25 663 aa18.8■□□□□ 0.6
CLN3-222ENST00000566083 IRS2Q9Y4H2 1338 aa18.8■□□□□ 0.6
CLN3-222ENST00000566083 TTLL12Q14166 644 aaPredicted RBP18.79■□□□□ 0.6
CLN3-222ENST00000566083 ARMC9Q7Z3E5 817 aa18.79■□□□□ 0.6
CLN3-222ENST00000566083 ZBED3Q96IU2 234 aaPredicted RBP18.79■□□□□ 0.6
CLN3-222ENST00000566083 SASH1O94885 1247 aa18.78■□□□□ 0.6
CLN3-222ENST00000566083 RASAL3Q86YV0 1011 aa18.78■□□□□ 0.6
CLN3-222ENST00000566083 CSRNP1Q96S65 589 aa18.78■□□□□ 0.6
CLN3-222ENST00000566083 PPP2R3BQ9Y5P8 575 aa18.78■□□□□ 0.6
CLN3-222ENST00000566083 COL1A1P02452 1464 aaPredicted RBP18.78■□□□□ 0.6
CLN3-222ENST00000566083 MROH5Q6ZUA9 1318 aa18.78■□□□□ 0.6
CLN3-222ENST00000566083 CASP8AP2Q9UKL3 1982 aa18.77■□□□□ 0.6
CLN3-222ENST00000566083 PLIN1O60240 522 aa18.77■□□□□ 0.6
CLN3-222ENST00000566083 MRPL50Q8N5N7 158 aaKnown RBP18.77■□□□□ 0.6
CLN3-222ENST00000566083 ZNF594Q96JF6 807 aaPredicted RBP18.77■□□□□ 0.6
CLN3-222ENST00000566083 RNF186Q9NXI6 227 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms