RNA–Protein interactions for RNA: ENST00000564899.1

SF3B3-205, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-205ENST00000564899 TSKSQ9UJT2 592 aa13.65□□□□□ -0.22
SF3B3-205ENST00000564899 SASH1O94885 1247 aa13.64□□□□□ -0.23
SF3B3-205ENST00000564899 IGHMBP2P38935 993 aaKnown RBP13.64□□□□□ -0.23
SF3B3-205ENST00000564899 LRRC24Q50LG9 513 aa13.64□□□□□ -0.23
SF3B3-205ENST00000564899 LDHAL6AQ6ZMR3 332 aa13.64□□□□□ -0.23
SF3B3-205ENST00000564899 ATG9AQ7Z3C6 839 aa13.64□□□□□ -0.23
SF3B3-205ENST00000564899 CNTROBQ8N137 903 aa13.64□□□□□ -0.23
SF3B3-205ENST00000564899 PUS3Q9BZE2 481 aaKnown RBP13.64□□□□□ -0.23
SF3B3-205ENST00000564899 HACL1Q9UJ83 578 aa13.64□□□□□ -0.23
SF3B3-205ENST00000564899 CLEC11AQ9Y240 323 aa13.64□□□□□ -0.23
SF3B3-205ENST00000564899 WDR33Q9C0J8 1336 aaKnown RBP13.64□□□□□ -0.23
SF3B3-205ENST00000564899 FKBP4Q02790 459 aaKnown RBP eCLIP13.63□□□□□ -0.23
SF3B3-205ENST00000564899 TFCP2Q12800 502 aa13.63□□□□□ -0.23
SF3B3-205ENST00000564899 DEFB115Q30KQ5 88 aa13.63□□□□□ -0.23
SF3B3-205ENST00000564899 CCDC93Q567U6 631 aa13.63□□□□□ -0.23
SF3B3-205ENST00000564899 DDX46Q7L014 1031 aaKnown RBP13.63□□□□□ -0.23
SF3B3-205ENST00000564899 ANKRD18AQ8IVF6 992 aa13.63□□□□□ -0.23
SF3B3-205ENST00000564899 CLASRPQ8N2M8 674 aaKnown RBP13.63□□□□□ -0.23
SF3B3-205ENST00000564899 MPHOSPH8Q99549 860 aa13.63□□□□□ -0.23
SF3B3-205ENST00000564899 CNNM1Q9NRU3 951 aa13.63□□□□□ -0.23
SF3B3-205ENST00000564899 CRY2Q49AN0 593 aa13.62□□□□□ -0.23
SF3B3-205ENST00000564899 OTUD7AQ8TE49 926 aaPredicted RBP13.62□□□□□ -0.23
SF3B3-205ENST00000564899 RPGRQ92834 1020 aaKnown RBP13.62□□□□□ -0.23
SF3B3-205ENST00000564899 KLRG2A4D1S0 409 aaPredicted RBP13.61□□□□□ -0.23
SF3B3-205ENST00000564899 FZD9O00144 591 aa13.61□□□□□ -0.23
SF3B3-205ENST00000564899 TRAF5O00463 557 aa13.61□□□□□ -0.23
SF3B3-205ENST00000564899 GRM1Q13255 1194 aa13.61□□□□□ -0.23
SF3B3-205ENST00000564899 METTL24Q5JXM2 366 aa13.61□□□□□ -0.23
SF3B3-205ENST00000564899 CYP4F22Q6NT55 531 aa13.61□□□□□ -0.23
SF3B3-205ENST00000564899 AACSQ86V21 672 aa13.61□□□□□ -0.23
SF3B3-205ENST00000564899 CELF1Q92879 486 aaKnown RBP13.61□□□□□ -0.23
SF3B3-205ENST00000564899 RBM17Q96I25 401 aaKnown RBP13.61□□□□□ -0.23
SF3B3-205ENST00000564899 CEP126Q9P2H0 1117 aa13.61□□□□□ -0.23
SF3B3-205ENST00000564899 ABT1Q9ULW3 272 aaKnown RBP13.61□□□□□ -0.23
SF3B3-205ENST00000564899 RIPOR2Q9Y4F9 1068 aa13.61□□□□□ -0.23
SF3B3-205ENST00000564899 CCDC85CA6NKD9 419 aa13.6□□□□□ -0.23
SF3B3-205ENST00000564899 IFIT2P09913 472 aaKnown RBP13.6□□□□□ -0.23
SF3B3-205ENST00000564899 NPR1P16066 1061 aa13.6□□□□□ -0.23
SF3B3-205ENST00000564899 GRAPQ13588 217 aa13.6□□□□□ -0.23
SF3B3-205ENST00000564899 TNNI3KQ59H18 835 aa13.6□□□□□ -0.23
SF3B3-205ENST00000564899 SOGA3Q5TF21 947 aa13.6□□□□□ -0.23
SF3B3-205ENST00000564899 PLEKHM2Q8IWE5 1019 aa13.6□□□□□ -0.23
SF3B3-205ENST00000564899 GRAPLQ8TC17 118 aaPredicted RBP13.6□□□□□ -0.23
SF3B3-205ENST00000564899 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.6□□□□□ -0.23
SF3B3-205ENST00000564899 FPGT-TNNI3KV9GXZ4 949 aa13.6□□□□□ -0.23
SF3B3-205ENST00000564899 MROH5Q6ZUA9 1318 aa13.6□□□□□ -0.23
SF3B3-205ENST00000564899 COL4A1P02462 1669 aa13.59□□□□□ -0.23
SF3B3-205ENST00000564899 ZNF609O15014 1411 aa13.59□□□□□ -0.23
SF3B3-205ENST00000564899 AOC2O75106 756 aa13.59□□□□□ -0.23
SF3B3-205ENST00000564899 MX1P20591 662 aa13.59□□□□□ -0.23
SF3B3-205ENST00000564899 IARSP41252 1262 aaKnown RBP13.59□□□□□ -0.23
SF3B3-205ENST00000564899 EPS15P42566 896 aa13.59□□□□□ -0.23
SF3B3-205ENST00000564899 RPS8P62241 208 aaKnown RBP13.59□□□□□ -0.23
SF3B3-205ENST00000564899 CST9Q5W186 159 aa13.59□□□□□ -0.23
SF3B3-205ENST00000564899 EAF2Q96CJ1 260 aaPredicted RBP13.59□□□□□ -0.23
SF3B3-205ENST00000564899 GPR108Q9NPR9 543 aa13.59□□□□□ -0.23
SF3B3-205ENST00000564899 BSDC1Q9NW68 430 aaPredicted RBP13.59□□□□□ -0.23
SF3B3-205ENST00000564899 SALL3Q9BXA9 1300 aa13.59□□□□□ -0.23
SF3B3-205ENST00000564899 HOXA10P31260 410 aaPredicted RBP13.58□□□□□ -0.24
SF3B3-205ENST00000564899 SCNN1DP51172 638 aa13.58□□□□□ -0.24
SF3B3-205ENST00000564899 GPATCH3Q96I76 525 aa13.58□□□□□ -0.24
SF3B3-205ENST00000564899 CAPNS2Q96L46 248 aa13.58□□□□□ -0.24
SF3B3-205ENST00000564899 CRAMP1Q96RY5 1269 aa13.58□□□□□ -0.24
SF3B3-205ENST00000564899 CCDC8Q9H0W5 538 aaPredicted RBP13.58□□□□□ -0.24
SF3B3-205ENST00000564899 AKAP2Q9Y2D5 859 aa13.58□□□□□ -0.24
SF3B3-205ENST00000564899 PDE8BO95263 885 aa13.57□□□□□ -0.24
SF3B3-205ENST00000564899 PDE1AP54750 535 aa13.57□□□□□ -0.24
SF3B3-205ENST00000564899 MAP2K1Q02750 393 aaPredicted RBP13.57□□□□□ -0.24
SF3B3-205ENST00000564899 CHRNDQ07001 517 aa13.57□□□□□ -0.24
SF3B3-205ENST00000564899 PAXIP1Q6ZW49 1069 aaPredicted RBP13.57□□□□□ -0.24
SF3B3-205ENST00000564899 GPC2Q8N158 579 aa13.57□□□□□ -0.24
SF3B3-205ENST00000564899 VGLL2Q8N8G2 317 aa13.57□□□□□ -0.24
SF3B3-205ENST00000564899 TLR7Q9NYK1 1049 aaKnown RBP13.57□□□□□ -0.24
SF3B3-205ENST00000564899 STAP2Q9UGK3 403 aa13.57□□□□□ -0.24
SF3B3-205ENST00000564899 GJA3Q9Y6H8 435 aa13.57□□□□□ -0.24
SF3B3-205ENST00000564899 CASP8AP2Q9UKL3 1982 aa13.56□□□□□ -0.24
SF3B3-205ENST00000564899 A0A1B0GUL7 405 aa13.56□□□□□ -0.24
SF3B3-205ENST00000564899 RGS19P49795 217 aa13.56□□□□□ -0.24
SF3B3-205ENST00000564899 MLLT1Q03111 559 aaPredicted RBP13.56□□□□□ -0.24
SF3B3-205ENST00000564899 PUM3Q15397 648 aaKnown RBP13.56□□□□□ -0.24
SF3B3-205ENST00000564899 ATP2B3Q16720 1220 aa13.56□□□□□ -0.24
SF3B3-205ENST00000564899 TTC22Q5TAA0 569 aa13.56□□□□□ -0.24
SF3B3-205ENST00000564899 TSHZ3Q63HK5 1081 aa13.56□□□□□ -0.24
SF3B3-205ENST00000564899 PNMA8AQ86V59 439 aaPredicted RBP13.56□□□□□ -0.24
SF3B3-205ENST00000564899 HELBQ8NG08 1087 aaPredicted RBP13.56□□□□□ -0.24
SF3B3-205ENST00000564899 NEUROD6Q96NK8 337 aa13.56□□□□□ -0.24
SF3B3-205ENST00000564899 DBNDD2Q9BQY9 259 aa13.56□□□□□ -0.24
SF3B3-205ENST00000564899 OSBPL3Q9H4L5 887 aa13.56□□□□□ -0.24
SF3B3-205ENST00000564899 DBNLQ9UJU6 430 aaKnown RBP13.56□□□□□ -0.24
SF3B3-205ENST00000564899 MINPP1Q9UNW1 487 aa13.56□□□□□ -0.24
SF3B3-205ENST00000564899 AOX1Q06278 1338 aa13.56□□□□□ -0.24
SF3B3-205ENST00000564899 TRPM7Q96QT4 1865 aa13.55□□□□□ -0.24
SF3B3-205ENST00000564899 PDE4DIPQ5VU43 2346 aa13.55□□□□□ -0.24
SF3B3-205ENST00000564899 TAF5LO75529 589 aa13.55□□□□□ -0.24
SF3B3-205ENST00000564899 BBOX1O75936 387 aa13.55□□□□□ -0.24
SF3B3-205ENST00000564899 TIMM10P62072 90 aa13.55□□□□□ -0.24
SF3B3-205ENST00000564899 GPR101Q96P66 508 aaPredicted RBP13.55□□□□□ -0.24
SF3B3-205ENST00000564899 ANKRD2Q9GZV1 360 aa13.55□□□□□ -0.24
SF3B3-205ENST00000564899 ECHDC1Q9NTX5 307 aa13.55□□□□□ -0.24
SF3B3-205ENST00000564899 TTC41PQ6P2S7 1318 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms