RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 FKBP4Q02790 459 aaKnown RBP eCLIP25.34■■□□□ 1.65
CLN3-212ENST00000564574 NEUROD6Q96NK8 337 aa25.34■■□□□ 1.65
CLN3-212ENST00000564574 LNPKQ9C0E8 428 aa25.34■■□□□ 1.65
CLN3-212ENST00000564574 VPS33BQ9H267 617 aa25.34■■□□□ 1.65
CLN3-212ENST00000564574 LTBP3Q9NS15 1303 aa25.34■■□□□ 1.65
CLN3-212ENST00000564574 TIMM10P62072 90 aa25.33■■□□□ 1.65
CLN3-212ENST00000564574 SNAP23O00161 211 aa25.32■■□□□ 1.64
CLN3-212ENST00000564574 TAOK3Q9H2K8 898 aa25.32■■□□□ 1.64
CLN3-212ENST00000564574 IRS2Q9Y4H2 1338 aa25.32■■□□□ 1.64
CLN3-212ENST00000564574 XAGE2Q96GT9 111 aa25.31■■□□□ 1.64
CLN3-212ENST00000564574 CCDC8Q9H0W5 538 aaPredicted RBP25.31■■□□□ 1.64
CLN3-212ENST00000564574 CAVIN4Q5BKX8 364 aa25.3■■□□□ 1.64
CLN3-212ENST00000564574 PELP1Q8IZL8 1130 aaKnown RBP25.3■■□□□ 1.64
CLN3-212ENST00000564574 ZC3H12CQ9C0D7 883 aaKnown RBP25.3■■□□□ 1.64
CLN3-212ENST00000564574 DBNLQ9UJU6 430 aaKnown RBP25.3■■□□□ 1.64
CLN3-212ENST00000564574 WTIPA6NIX2 430 aaPredicted RBP25.29■■□□□ 1.64
CLN3-212ENST00000564574 NFKBIEO00221 500 aa25.29■■□□□ 1.64
CLN3-212ENST00000564574 YBX3P16989 372 aaKnown RBP eCLIP25.29■■□□□ 1.64
CLN3-212ENST00000564574 WASHC4Q2M389 1173 aa25.29■■□□□ 1.64
CLN3-212ENST00000564574 GORABQ5T7V8 394 aa25.29■■□□□ 1.64
CLN3-212ENST00000564574 DBNDD2Q9BQY9 259 aa25.29■■□□□ 1.64
CLN3-212ENST00000564574 MYH13Q9UKX3 1938 aa25.29■■□□□ 1.64
CLN3-212ENST00000564574 CCDC88AQ3V6T2 1871 aa25.28■■□□□ 1.64
CLN3-212ENST00000564574 ADORA1P30542 326 aa25.28■■□□□ 1.64
CLN3-212ENST00000564574 GPR162Q16538 588 aa25.28■■□□□ 1.64
CLN3-212ENST00000564574 CCDC158Q5M9N0 1113 aa25.28■■□□□ 1.64
CLN3-212ENST00000564574 GPATCH3Q96I76 525 aa25.28■■□□□ 1.64
CLN3-212ENST00000564574 BCL11AQ9H165 835 aa25.28■■□□□ 1.64
CLN3-212ENST00000564574 SALL3Q9BXA9 1300 aa25.28■■□□□ 1.64
CLN3-212ENST00000564574 ZBTB22O15209 634 aa25.27■■□□□ 1.64
CLN3-212ENST00000564574 GRIN3BO60391 1043 aa25.27■■□□□ 1.64
CLN3-212ENST00000564574 KLRK1P26718 216 aa25.27■■□□□ 1.64
CLN3-212ENST00000564574 KIAA2012Q0VF49 1180 aa25.27■■□□□ 1.64
CLN3-212ENST00000564574 ZNF804AQ7Z570 1209 aa25.27■■□□□ 1.64
CLN3-212ENST00000564574 C16orf71Q8IYS4 520 aaPredicted RBP25.27■■□□□ 1.64
CLN3-212ENST00000564574 FAM84BQ96KN1 310 aaPredicted RBP25.27■■□□□ 1.64
CLN3-212ENST00000564574 GPR101Q96P66 508 aaPredicted RBP25.27■■□□□ 1.64
CLN3-212ENST00000564574 TLR7Q9NYK1 1049 aaKnown RBP25.27■■□□□ 1.64
CLN3-212ENST00000564574 TTC41PQ6P2S7 1318 aa25.27■■□□□ 1.64
CLN3-212ENST00000564574 SBF1O95248 1867 aa25.27■■□□□ 1.64
CLN3-212ENST00000564574 DICER1Q9UPY3 1922 aaKnown RBP25.26■■□□□ 1.63
CLN3-212ENST00000564574 HIBADHP31937 336 aaKnown RBP25.26■■□□□ 1.63
CLN3-212ENST00000564574 ARHGAP27Q6ZUM4 889 aa25.26■■□□□ 1.63
CLN3-212ENST00000564574 FBXO33Q7Z6M2 555 aa25.26■■□□□ 1.63
CLN3-212ENST00000564574 PPIP5K2O43314 1243 aa25.25■■□□□ 1.63
CLN3-212ENST00000564574 MX1P20591 662 aa25.25■■□□□ 1.63
CLN3-212ENST00000564574 IARSP41252 1262 aaKnown RBP25.25■■□□□ 1.63
CLN3-212ENST00000564574 GYG1P46976 350 aa25.25■■□□□ 1.63
CLN3-212ENST00000564574 CCDC102BQ68D86 513 aa25.25■■□□□ 1.63
CLN3-212ENST00000564574 TXNRD3Q86VQ6 643 aa25.25■■□□□ 1.63
CLN3-212ENST00000564574 VPS37DQ86XT2 251 aa25.25■■□□□ 1.63
CLN3-212ENST00000564574 ZNF512BQ96KM6 892 aaPredicted RBP25.25■■□□□ 1.63
CLN3-212ENST00000564574 COA1Q9GZY4 146 aa25.25■■□□□ 1.63
CLN3-212ENST00000564574 GNL3LQ9NVN8 582 aaKnown RBP25.25■■□□□ 1.63
CLN3-212ENST00000564574 CHD4Q14839 1912 aa25.25■■□□□ 1.63
CLN3-212ENST00000564574 RIMBP2O15034 1052 aa25.24■■□□□ 1.63
CLN3-212ENST00000564574 UQCRFS1P1P0C7P4 283 aa25.24■■□□□ 1.63
CLN3-212ENST00000564574 PDE4AP27815 886 aa25.24■■□□□ 1.63
CLN3-212ENST00000564574 BCAMP50895 628 aa25.24■■□□□ 1.63
CLN3-212ENST00000564574 TTC39AQ5SRH9 613 aa25.24■■□□□ 1.63
CLN3-212ENST00000564574 ECHDC1Q9NTX5 307 aa25.24■■□□□ 1.63
CLN3-212ENST00000564574 STAP2Q9UGK3 403 aa25.24■■□□□ 1.63
CLN3-212ENST00000564574 AOX1Q06278 1338 aa25.23■■□□□ 1.63
CLN3-212ENST00000564574 AOC3Q16853 763 aa25.23■■□□□ 1.63
CLN3-212ENST00000564574 OTUD7AQ8TE49 926 aaPredicted RBP25.23■■□□□ 1.63
CLN3-212ENST00000564574 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.23■■□□□ 1.63
CLN3-212ENST00000564574 OSBPL3Q9H4L5 887 aa25.23■■□□□ 1.63
CLN3-212ENST00000564574 ZNF277Q9NRM2 450 aaPredicted RBP25.23■■□□□ 1.63
CLN3-212ENST00000564574 G3V3G9 751 aa25.22■■□□□ 1.63
CLN3-212ENST00000564574 SEMA3EO15041 775 aa25.22■■□□□ 1.63
CLN3-212ENST00000564574 ERC2O15083 957 aa25.22■■□□□ 1.63
CLN3-212ENST00000564574 ARID4AP29374 1257 aaPredicted RBP25.22■■□□□ 1.63
CLN3-212ENST00000564574 PHKA1P46020 1223 aa25.22■■□□□ 1.63
CLN3-212ENST00000564574 PDE1AP54750 535 aa25.22■■□□□ 1.63
CLN3-212ENST00000564574 RASSF7Q02833 373 aa25.22■■□□□ 1.63
CLN3-212ENST00000564574 DCAF8Q5TAQ9 597 aa25.22■■□□□ 1.63
CLN3-212ENST00000564574 PLEKHM2Q8IWE5 1019 aa25.22■■□□□ 1.63
CLN3-212ENST00000564574 LARGE2Q8N3Y3 721 aa25.22■■□□□ 1.63
CLN3-212ENST00000564574 CD209Q9NNX6 404 aa25.22■■□□□ 1.63
CLN3-212ENST00000564574 AKAP11Q9UKA4 1901 aa25.22■■□□□ 1.63
CLN3-212ENST00000564574 IL1R1P14778 569 aa25.21■■□□□ 1.63
CLN3-212ENST00000564574 PSME4Q14997 1843 aa25.21■■□□□ 1.63
CLN3-212ENST00000564574 ATP5JP18859 108 aa25.2■■□□□ 1.62
CLN3-212ENST00000564574 PODNQ7Z5L7 613 aa25.2■■□□□ 1.62
CLN3-212ENST00000564574 TDRD7Q8NHU6 1098 aaKnown RBP25.2■■□□□ 1.62
CLN3-212ENST00000564574 GLRX3O76003 335 aaKnown RBP25.19■■□□□ 1.62
CLN3-212ENST00000564574 LMNB1P20700 586 aa25.19■■□□□ 1.62
CLN3-212ENST00000564574 PDS5AQ29RF7 1337 aaKnown RBP25.18■■□□□ 1.62
CLN3-212ENST00000564574 NIM1KQ8IY84 436 aa25.18■■□□□ 1.62
CLN3-212ENST00000564574 JDP2Q8WYK2 163 aa25.18■■□□□ 1.62
CLN3-212ENST00000564574 DENND2AQ9ULE3 1009 aa25.18■■□□□ 1.62
CLN3-212ENST00000564574 ECE2O60344 883 aa25.17■■□□□ 1.62
CLN3-212ENST00000564574 DOK7Q18PE1 504 aa25.17■■□□□ 1.62
CLN3-212ENST00000564574 PI4K2BQ8TCG2 481 aa25.17■■□□□ 1.62
CLN3-212ENST00000564574 DBNDD1Q9H9R9 158 aa25.17■■□□□ 1.62
CLN3-212ENST00000564574 UTRNP46939 3433 aa25.17■■□□□ 1.62
CLN3-212ENST00000564574 COL4A5P29400 1685 aa25.17■■□□□ 1.62
CLN3-212ENST00000564574 FRAT2O75474 233 aaPredicted RBP25.16■■□□□ 1.62
CLN3-212ENST00000564574 TIAM2Q8IVF5 1701 aa25.15■■□□□ 1.62
CLN3-212ENST00000564574 SCN9AQ15858 1988 aa25.15■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms