RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 KIAA1324LA8MWY0 1029 aaPredicted RBP7.85□□□□□ -1.15
VPS35-205ENST00000563984 ABL1P00519 1130 aa7.85□□□□□ -1.15
VPS35-205ENST00000563984 GHRHP01286 108 aa7.85□□□□□ -1.15
VPS35-205ENST00000563984 DNM1Q05193 864 aaKnown RBP7.85□□□□□ -1.15
VPS35-205ENST00000563984 MTMR3Q13615 1198 aa7.85□□□□□ -1.15
VPS35-205ENST00000563984 MSL1Q68DK7 614 aa7.85□□□□□ -1.15
VPS35-205ENST00000563984 XKR5Q6UX68 686 aa7.85□□□□□ -1.15
VPS35-205ENST00000563984 TTC16Q8NEE8 873 aa7.85□□□□□ -1.15
VPS35-205ENST00000563984 EDEM1Q92611 657 aa7.85□□□□□ -1.15
VPS35-205ENST00000563984 NSUN5Q96P11 429 aaKnown RBP7.85□□□□□ -1.15
VPS35-205ENST00000563984 ABI2Q9NYB9 513 aaPredicted RBP7.85□□□□□ -1.15
VPS35-205ENST00000563984 PDGFAP04085 211 aa7.84□□□□□ -1.15
VPS35-205ENST00000563984 HYAL2Q12891 473 aa7.84□□□□□ -1.15
VPS35-205ENST00000563984 FBXO11Q86XK2 927 aa7.84□□□□□ -1.15
VPS35-205ENST00000563984 PLD4Q96BZ4 506 aa7.84□□□□□ -1.15
VPS35-205ENST00000563984 KRTAP4-11Q9BYQ6 195 aa7.84□□□□□ -1.15
VPS35-205ENST00000563984 ELP3Q9H9T3 547 aa7.84□□□□□ -1.15
VPS35-205ENST00000563984 ADAMTS4O75173 837 aa7.83□□□□□ -1.16
VPS35-205ENST00000563984 USP5P45974 858 aa7.83□□□□□ -1.16
VPS35-205ENST00000563984 AAMPQ13685 434 aa7.83□□□□□ -1.16
VPS35-205ENST00000563984 ZNF438Q7Z4V0 828 aa7.83□□□□□ -1.16
VPS35-205ENST00000563984 WFDC8Q8IUA0 241 aa7.83□□□□□ -1.16
VPS35-205ENST00000563984 SPACA7Q96KW9 195 aa7.83□□□□□ -1.16
VPS35-205ENST00000563984 ICMTO60725 284 aa7.82□□□□□ -1.16
VPS35-205ENST00000563984 C8orf34Q49A92 452 aa7.82□□□□□ -1.16
VPS35-205ENST00000563984 DZIP1LQ8IYY4 767 aaKnown RBP7.82□□□□□ -1.16
VPS35-205ENST00000563984 DTWD1Q8N5C7 304 aa7.82□□□□□ -1.16
VPS35-205ENST00000563984 GGNBP2Q9H3C7 697 aa7.82□□□□□ -1.16
VPS35-205ENST00000563984 KIF4AO95239 1232 aa7.81□□□□□ -1.16
VPS35-205ENST00000563984 EHHADHQ08426 723 aa7.81□□□□□ -1.16
VPS35-205ENST00000563984 ZNF211Q13398 564 aaPredicted RBP7.81□□□□□ -1.16
VPS35-205ENST00000563984 LCE4AQ5TA78 99 aa7.81□□□□□ -1.16
VPS35-205ENST00000563984 GDF6Q6KF10 455 aaPredicted RBP7.81□□□□□ -1.16
VPS35-205ENST00000563984 CACTIN-AS1Q8N1I8 211 aa7.81□□□□□ -1.16
VPS35-205ENST00000563984 PMEPA1Q969W9 287 aa7.81□□□□□ -1.16
VPS35-205ENST00000563984 ANO2Q9NQ90 1003 aa7.81□□□□□ -1.16
VPS35-205ENST00000563984 TMEM63CQ9P1W3 806 aa7.81□□□□□ -1.16
VPS35-205ENST00000563984 POLIQ9UNA4 740 aa7.81□□□□□ -1.16
VPS35-205ENST00000563984 IGF2-ASQ6U949 168 aa7.8□□□□□ -1.16
VPS35-205ENST00000563984 TXNDC2Q86VQ3 553 aa7.8□□□□□ -1.16
VPS35-205ENST00000563984 FZD6O60353 706 aa7.79□□□□□ -1.16
VPS35-205ENST00000563984 SERPINB4P48594 390 aa7.79□□□□□ -1.16
VPS35-205ENST00000563984 COL13A1Q5TAT6 717 aaPredicted RBP7.79□□□□□ -1.16
VPS35-205ENST00000563984 GLYCTKQ8IVS8 523 aa7.79□□□□□ -1.16
VPS35-205ENST00000563984 DEAF1O75398 565 aaPredicted RBP7.78□□□□□ -1.16
VPS35-205ENST00000563984 TGFB1P01137 390 aa7.78□□□□□ -1.16
VPS35-205ENST00000563984 CYP2E1P05181 493 aaPredicted RBP7.78□□□□□ -1.16
VPS35-205ENST00000563984 CCER1Q8TC90 406 aaPredicted RBP7.78□□□□□ -1.16
VPS35-205ENST00000563984 CNTN3Q9P232 1028 aa7.78□□□□□ -1.16
VPS35-205ENST00000563984 A6NHS1 94 aa7.77□□□□□ -1.17
VPS35-205ENST00000563984 H3BRB1 525 aa7.77□□□□□ -1.17
VPS35-205ENST00000563984 SMNDC1O75940 238 aaKnown RBP eCLIP7.77□□□□□ -1.17
VPS35-205ENST00000563984 CES1P23141 567 aa7.77□□□□□ -1.17
VPS35-205ENST00000563984 NCAPG2Q86XI2 1143 aa7.77□□□□□ -1.17
VPS35-205ENST00000563984 GJD3Q8N144 294 aa7.77□□□□□ -1.17
VPS35-205ENST00000563984 IL22RA1Q8N6P7 574 aa7.77□□□□□ -1.17
VPS35-205ENST00000563984 CEP120Q8N960 986 aa7.77□□□□□ -1.17
VPS35-205ENST00000563984 C1orf127Q8N9H9 656 aa7.77□□□□□ -1.17
VPS35-205ENST00000563984 MUC3BQ9H195 1237 aa7.77□□□□□ -1.17
VPS35-205ENST00000563984 TUT1Q9H6E5 874 aaKnown RBP7.77□□□□□ -1.17
VPS35-205ENST00000563984 CCDC87Q9NVE4 849 aa7.77□□□□□ -1.17
VPS35-205ENST00000563984 SALL4Q9UJQ4 1053 aa7.77□□□□□ -1.17
VPS35-205ENST00000563984 TRIM33Q9UPN9 1127 aa7.77□□□□□ -1.17
VPS35-205ENST00000563984 BRD1O95696 1058 aa7.76□□□□□ -1.17
VPS35-205ENST00000563984 SPINK2P20155 84 aa7.76□□□□□ -1.17
VPS35-205ENST00000563984 SRA1Q9HD15 236 aaKnown RBP7.76□□□□□ -1.17
VPS35-205ENST00000563984 ALX3O95076 343 aa7.75□□□□□ -1.17
VPS35-205ENST00000563984 ATP11AP98196 1134 aa7.75□□□□□ -1.17
VPS35-205ENST00000563984 ECM1Q16610 540 aa7.75□□□□□ -1.17
VPS35-205ENST00000563984 CEP135Q66GS9 1140 aa7.75□□□□□ -1.17
VPS35-205ENST00000563984 SNX29Q8TEQ0 813 aa7.75□□□□□ -1.17
VPS35-205ENST00000563984 KRTAP4-5Q9BYR2 181 aa7.75□□□□□ -1.17
VPS35-205ENST00000563984 PBX4Q9BYU1 374 aa7.75□□□□□ -1.17
VPS35-205ENST00000563984 KANSL3Q9P2N6 904 aa7.75□□□□□ -1.17
VPS35-205ENST00000563984 BRPF3Q9ULD4 1205 aa7.75□□□□□ -1.17
VPS35-205ENST00000563984 TNFRSF21O75509 655 aa7.74□□□□□ -1.17
VPS35-205ENST00000563984 CDC25BP30305 580 aa7.74□□□□□ -1.17
VPS35-205ENST00000563984 TXNDC11Q6PKC3 985 aa7.74□□□□□ -1.17
VPS35-205ENST00000563984 MAP4K3Q8IVH8 894 aa7.74□□□□□ -1.17
VPS35-205ENST00000563984 DCAF11Q8TEB1 546 aa7.74□□□□□ -1.17
VPS35-205ENST00000563984 LACRTQ9GZZ8 138 aa7.74□□□□□ -1.17
VPS35-205ENST00000563984 RASSF4Q9H2L5 321 aa7.74□□□□□ -1.17
VPS35-205ENST00000563984 CHRDQ9H2X0 955 aa7.74□□□□□ -1.17
VPS35-205ENST00000563984 AKTIPQ9H8T0 292 aa7.74□□□□□ -1.17
VPS35-205ENST00000563984 DLL1O00548 723 aa7.73□□□□□ -1.17
VPS35-205ENST00000563984 NDUFB5O43674 189 aa7.73□□□□□ -1.17
VPS35-205ENST00000563984 PHACTR2O75167 634 aa7.73□□□□□ -1.17
VPS35-205ENST00000563984 IGLV1-40P01703 118 aa7.73□□□□□ -1.17
VPS35-205ENST00000563984 ARHGAP4P98171 946 aa7.73□□□□□ -1.17
VPS35-205ENST00000563984 CITED4Q96RK1 184 aa7.73□□□□□ -1.17
VPS35-205ENST00000563984 ADGRE2Q9UHX3 823 aa7.73□□□□□ -1.17
VPS35-205ENST00000563984 GNEQ9Y223 722 aaKnown RBP7.73□□□□□ -1.17
VPS35-205ENST00000563984 PPME1Q9Y570 386 aa7.73□□□□□ -1.17
VPS35-205ENST00000563984 CDC27P30260 824 aa7.72□□□□□ -1.17
VPS35-205ENST00000563984 ADAMTSL4Q6UY14 1074 aa7.72□□□□□ -1.17
VPS35-205ENST00000563984 FAM177BA6PVY3 158 aa7.71□□□□□ -1.18
VPS35-205ENST00000563984 LINC01387J3KSC0 135 aa7.71□□□□□ -1.18
VPS35-205ENST00000563984 NEFLP07196 543 aa7.71□□□□□ -1.18
VPS35-205ENST00000563984 EDN3P14138 238 aa7.71□□□□□ -1.18
VPS35-205ENST00000563984 PTPRAP18433 802 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms