RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 AOX1Q06278 1338 aa13.56□□□□□ -0.24
SF3B3-204ENST00000563739 RANBP2P49792 3224 aaKnown RBP13.55□□□□□ -0.24
SF3B3-204ENST00000563739 SASH1O94885 1247 aa13.55□□□□□ -0.24
SF3B3-204ENST00000563739 CCDC146Q8IYE0 955 aa13.55□□□□□ -0.24
SF3B3-204ENST00000563739 DBF4Q9UBU7 674 aaPredicted RBP13.55□□□□□ -0.24
SF3B3-204ENST00000563739 XDHP47989 1333 aa13.55□□□□□ -0.24
SF3B3-204ENST00000563739 IRS2Q9Y4H2 1338 aa13.55□□□□□ -0.24
SF3B3-204ENST00000563739 USP17L3A6NCW0 530 aa13.54□□□□□ -0.24
SF3B3-204ENST00000563739 USP17L4A6NCW7 530 aa13.54□□□□□ -0.24
SF3B3-204ENST00000563739 IGF2BP3O00425 579 aaKnown RBP eCLIP13.54□□□□□ -0.24
SF3B3-204ENST00000563739 PCCAP05165 728 aaPredicted RBP13.54□□□□□ -0.24
SF3B3-204ENST00000563739 ZNF853P0CG23 659 aa13.54□□□□□ -0.24
SF3B3-204ENST00000563739 DUSP27Q5VZP5 1158 aa13.54□□□□□ -0.24
SF3B3-204ENST00000563739 USP17L1Q7RTZ2 530 aa13.54□□□□□ -0.24
SF3B3-204ENST00000563739 HDAC9Q9UKV0 1011 aa13.54□□□□□ -0.24
SF3B3-204ENST00000563739 CEP290O15078 2479 aa13.54□□□□□ -0.24
SF3B3-204ENST00000563739 FKTNO75072 461 aa13.53□□□□□ -0.24
SF3B3-204ENST00000563739 GJA5P36382 358 aa13.53□□□□□ -0.24
SF3B3-204ENST00000563739 FXR1P51114 621 aaKnown RBP eCLIP13.53□□□□□ -0.24
SF3B3-204ENST00000563739 SPRYD7Q5W111 196 aa13.53□□□□□ -0.24
SF3B3-204ENST00000563739 OTOP1Q7RTM1 612 aa13.53□□□□□ -0.24
SF3B3-204ENST00000563739 PODNQ7Z5L7 613 aa13.53□□□□□ -0.24
SF3B3-204ENST00000563739 MYD88Q99836 296 aa13.53□□□□□ -0.24
SF3B3-204ENST00000563739 MBIPQ9NS73 344 aa13.53□□□□□ -0.24
SF3B3-204ENST00000563739 ANKIB1Q9P2G1 1089 aa13.53□□□□□ -0.24
SF3B3-204ENST00000563739 PCDHAC2Q9Y5I4 1007 aa13.53□□□□□ -0.24
SF3B3-204ENST00000563739 COL1A1P02452 1464 aaPredicted RBP13.53□□□□□ -0.24
SF3B3-204ENST00000563739 ARAP2Q8WZ64 1704 aa13.53□□□□□ -0.24
SF3B3-204ENST00000563739 TRIOBPQ9H2D6 2365 aa13.52□□□□□ -0.24
SF3B3-204ENST00000563739 DLL1O00548 723 aa13.52□□□□□ -0.25
SF3B3-204ENST00000563739 PDE8AO60658 829 aa13.52□□□□□ -0.25
SF3B3-204ENST00000563739 IGKV5-2P06315 115 aa13.52□□□□□ -0.25
SF3B3-204ENST00000563739 LMOD3Q0VAK6 560 aa13.52□□□□□ -0.25
SF3B3-204ENST00000563739 CLMNQ96JQ2 1002 aa13.52□□□□□ -0.25
SF3B3-204ENST00000563739 HYPKQ9NX55 129 aa13.52□□□□□ -0.25
SF3B3-204ENST00000563739 ATP2B4P23634 1241 aa13.51□□□□□ -0.25
SF3B3-204ENST00000563739 NEUROD2Q15784 382 aa13.51□□□□□ -0.25
SF3B3-204ENST00000563739 CERS5Q8N5B7 392 aa13.51□□□□□ -0.25
SF3B3-204ENST00000563739 PNNQ9H307 717 aaKnown RBP13.51□□□□□ -0.25
SF3B3-204ENST00000563739 MINPP1Q9UNW1 487 aa13.51□□□□□ -0.25
SF3B3-204ENST00000563739 CTSWP56202 376 aa13.5□□□□□ -0.25
SF3B3-204ENST00000563739 PRKG1Q13976 671 aa13.5□□□□□ -0.25
SF3B3-204ENST00000563739 MAP3K11Q16584 847 aa13.5□□□□□ -0.25
SF3B3-204ENST00000563739 CCDC152Q4G0S7 254 aa13.5□□□□□ -0.25
SF3B3-204ENST00000563739 CCDC191Q8NCU4 936 aa13.5□□□□□ -0.25
SF3B3-204ENST00000563739 TTLL11Q8NHH1 800 aa13.5□□□□□ -0.25
SF3B3-204ENST00000563739 GREM2Q9H772 168 aa13.5□□□□□ -0.25
SF3B3-204ENST00000563739 LAS1LQ9Y4W2 734 aaKnown RBP13.5□□□□□ -0.25
SF3B3-204ENST00000563739 CCT4P50991 539 aaKnown RBP13.49□□□□□ -0.25
SF3B3-204ENST00000563739 SREBF2Q12772 1141 aa13.49□□□□□ -0.25
SF3B3-204ENST00000563739 STRIP1Q5VSL9 837 aa13.49□□□□□ -0.25
SF3B3-204ENST00000563739 IFNL1Q8IU54 200 aa13.49□□□□□ -0.25
SF3B3-204ENST00000563739 ANKRD18AQ8IVF6 992 aa13.49□□□□□ -0.25
SF3B3-204ENST00000563739 ARMC5Q96C12 935 aa13.49□□□□□ -0.25
SF3B3-204ENST00000563739 TRIM17Q9Y577 477 aa13.49□□□□□ -0.25
SF3B3-204ENST00000563739 RIC3Q7Z5B4 369 aa13.48□□□□□ -0.25
SF3B3-204ENST00000563739 WNK4Q96J92 1243 aa13.48□□□□□ -0.25
SF3B3-204ENST00000563739 PTPN18Q99952 460 aa13.48□□□□□ -0.25
SF3B3-204ENST00000563739 METTL22Q9BUU2 404 aaPredicted RBP13.48□□□□□ -0.25
SF3B3-204ENST00000563739 CWC25Q9NXE8 425 aaPredicted RBP13.48□□□□□ -0.25
SF3B3-204ENST00000563739 SNAP23O00161 211 aa13.47□□□□□ -0.25
SF3B3-204ENST00000563739 EN2P19622 333 aaPredicted RBP13.47□□□□□ -0.25
SF3B3-204ENST00000563739 CASP7P55210 303 aa13.47□□□□□ -0.25
SF3B3-204ENST00000563739 GOLGA2Q08379 1002 aa13.47□□□□□ -0.25
SF3B3-204ENST00000563739 TTLL12Q14166 644 aaPredicted RBP13.47□□□□□ -0.25
SF3B3-204ENST00000563739 C8orf58Q8NAV2 365 aa13.47□□□□□ -0.25
SF3B3-204ENST00000563739 CD99L2Q8TCZ2 262 aa13.47□□□□□ -0.25
SF3B3-204ENST00000563739 GCC1Q96CN9 775 aa13.47□□□□□ -0.25
SF3B3-204ENST00000563739 BSDC1Q9NW68 430 aaPredicted RBP13.47□□□□□ -0.25
SF3B3-204ENST00000563739 ANGEL1Q9UNK9 670 aaKnown RBP13.47□□□□□ -0.25
SF3B3-204ENST00000563739 PTPN22Q9Y2R2 807 aa13.47□□□□□ -0.25
SF3B3-204ENST00000563739 MYO3BQ8WXR4 1341 aa13.46□□□□□ -0.25
SF3B3-204ENST00000563739 G3V3G9 751 aa13.46□□□□□ -0.25
SF3B3-204ENST00000563739 CRHR2Q13324 411 aa13.46□□□□□ -0.25
SF3B3-204ENST00000563739 DCAF8Q5TAQ9 597 aa13.46□□□□□ -0.25
SF3B3-204ENST00000563739 APOBEC3FQ8IUX4 373 aaKnown RBP13.46□□□□□ -0.25
SF3B3-204ENST00000563739 KIAA0825Q8IV33 1275 aa13.46□□□□□ -0.25
SF3B3-204ENST00000563739 CDAN1Q8IWY9 1227 aa13.46□□□□□ -0.25
SF3B3-204ENST00000563739 RUNDC1Q96C34 613 aa13.46□□□□□ -0.25
SF3B3-204ENST00000563739 COA1Q9GZY4 146 aa13.46□□□□□ -0.25
SF3B3-204ENST00000563739 ARMC9Q7Z3E5 817 aa13.45□□□□□ -0.26
SF3B3-204ENST00000563739 TSPYL6Q8N831 410 aa13.45□□□□□ -0.26
SF3B3-204ENST00000563739 ZNF804BA4D1E1 1349 aa13.44□□□□□ -0.26
SF3B3-204ENST00000563739 LAMA3Q16787 3333 aa13.44□□□□□ -0.26
SF3B3-204ENST00000563739 TESPA1A2RU30 521 aaPredicted RBP13.44□□□□□ -0.26
SF3B3-204ENST00000563739 MANSC4A6NHS7 340 aaPredicted RBP13.44□□□□□ -0.26
SF3B3-204ENST00000563739 ELL2O00472 640 aaPredicted RBP13.44□□□□□ -0.26
SF3B3-204ENST00000563739 NPM3O75607 178 aaKnown RBP13.44□□□□□ -0.26
SF3B3-204ENST00000563739 ZBTB48P10074 688 aaPredicted RBP13.44□□□□□ -0.26
SF3B3-204ENST00000563739 CWF19L2Q2TBE0 894 aaKnown RBP13.44□□□□□ -0.26
SF3B3-204ENST00000563739 MTMR14Q8NCE2 650 aa13.44□□□□□ -0.26
SF3B3-204ENST00000563739 ZNF333Q96JL9 665 aa13.44□□□□□ -0.26
SF3B3-204ENST00000563739 DEFB129Q9H1M3 183 aa13.44□□□□□ -0.26
SF3B3-204ENST00000563739 ADAMTS8Q9UP79 889 aa13.44□□□□□ -0.26
SF3B3-204ENST00000563739 MAP3K2Q9Y2U5 619 aa13.44□□□□□ -0.26
SF3B3-204ENST00000563739 COL6A3P12111 3177 aa13.43□□□□□ -0.26
SF3B3-204ENST00000563739 ALDH1A1P00352 501 aa13.43□□□□□ -0.26
SF3B3-204ENST00000563739 GTF2IP78347 998 aa13.43□□□□□ -0.26
SF3B3-204ENST00000563739 NBPF12Q5TAG4 269 aaPredicted RBP13.43□□□□□ -0.26
SF3B3-204ENST00000563739 FBXW7Q969H0 707 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms