RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 PHKA1P46020 1223 aa12.38□□□□□ -0.43
SMG1-208ENST00000563448 SCARF1Q14162 830 aa12.38□□□□□ -0.43
SMG1-208ENST00000563448 CCDC102BQ68D86 513 aa12.38□□□□□ -0.43
SMG1-208ENST00000563448 TMC4Q7Z404 712 aa12.38□□□□□ -0.43
SMG1-208ENST00000563448 SP8Q8IXZ3 490 aa12.38□□□□□ -0.43
SMG1-208ENST00000563448 EDC3Q96F86 508 aaKnown RBP12.38□□□□□ -0.43
SMG1-208ENST00000563448 ZNF512BQ96KM6 892 aaPredicted RBP12.38□□□□□ -0.43
SMG1-208ENST00000563448 DUOX1Q9NRD9 1551 aa12.38□□□□□ -0.43
SMG1-208ENST00000563448 CCDC88AQ3V6T2 1871 aa12.37□□□□□ -0.43
SMG1-208ENST00000563448 POLD1P28340 1107 aa12.37□□□□□ -0.43
SMG1-208ENST00000563448 ARID4AP29374 1257 aaPredicted RBP12.37□□□□□ -0.43
SMG1-208ENST00000563448 EVI5LQ96CN4 794 aa12.37□□□□□ -0.43
SMG1-208ENST00000563448 ATP6V0A2Q9Y487 856 aa12.37□□□□□ -0.43
SMG1-208ENST00000563448 ZNF804BA4D1E1 1349 aa12.37□□□□□ -0.43
SMG1-208ENST00000563448 XDHP47989 1333 aa12.37□□□□□ -0.43
SMG1-208ENST00000563448 IRS2Q9Y4H2 1338 aa12.37□□□□□ -0.43
SMG1-208ENST00000563448 KLRK1P26718 216 aa12.37□□□□□ -0.43
SMG1-208ENST00000563448 MCAMP43121 646 aa12.37□□□□□ -0.43
SMG1-208ENST00000563448 BCAMP50895 628 aa12.37□□□□□ -0.43
SMG1-208ENST00000563448 DNAJC2Q99543 621 aaKnown RBP12.37□□□□□ -0.43
SMG1-208ENST00000563448 ANKIB1Q9P2G1 1089 aa12.37□□□□□ -0.43
SMG1-208ENST00000563448 LEMD3Q9Y2U8 911 aa12.37□□□□□ -0.43
SMG1-208ENST00000563448 CHMLP26374 656 aa12.36□□□□□ -0.43
SMG1-208ENST00000563448 GYG1P46976 350 aa12.36□□□□□ -0.43
SMG1-208ENST00000563448 KCNJ4P48050 445 aa12.36□□□□□ -0.43
SMG1-208ENST00000563448 PODXL2Q9NZ53 605 aa12.36□□□□□ -0.43
SMG1-208ENST00000563448 UQCRFS1P1P0C7P4 283 aa12.35□□□□□ -0.43
SMG1-208ENST00000563448 PTGER2P43116 358 aa12.35□□□□□ -0.43
SMG1-208ENST00000563448 OLFM4Q6UX06 510 aa12.35□□□□□ -0.43
SMG1-208ENST00000563448 CNKSR1Q969H4 720 aa12.35□□□□□ -0.43
SMG1-208ENST00000563448 FAM84BQ96KN1 310 aaPredicted RBP12.35□□□□□ -0.43
SMG1-208ENST00000563448 SNRKQ9NRH2 765 aa12.35□□□□□ -0.43
SMG1-208ENST00000563448 PAG1Q9NWQ8 432 aa12.35□□□□□ -0.43
SMG1-208ENST00000563448 NSFL1CQ9UNZ2 370 aaKnown RBP12.35□□□□□ -0.43
SMG1-208ENST00000563448 GOLIM4O00461 696 aa12.35□□□□□ -0.43
SMG1-208ENST00000563448 KCNA3P22001 575 aa12.35□□□□□ -0.43
SMG1-208ENST00000563448 ATP2B4P23634 1241 aa12.35□□□□□ -0.43
SMG1-208ENST00000563448 ZAP70P43403 619 aa12.35□□□□□ -0.43
SMG1-208ENST00000563448 PRPF40BQ6NWY9 871 aaKnown RBP12.35□□□□□ -0.43
SMG1-208ENST00000563448 PI16Q6UXB8 463 aa12.35□□□□□ -0.43
SMG1-208ENST00000563448 FBXO33Q7Z6M2 555 aa12.35□□□□□ -0.43
SMG1-208ENST00000563448 TXNRD3Q86VQ6 643 aa12.35□□□□□ -0.43
SMG1-208ENST00000563448 ANTXR1Q9H6X2 564 aa12.35□□□□□ -0.43
SMG1-208ENST00000563448 A0A0G2JLW4 131 aa12.34□□□□□ -0.43
SMG1-208ENST00000563448 DPEP1P16444 411 aa12.34□□□□□ -0.43
SMG1-208ENST00000563448 FKBP4Q02790 459 aaKnown RBP eCLIP12.34□□□□□ -0.43
SMG1-208ENST00000563448 GPR101Q96P66 508 aaPredicted RBP12.34□□□□□ -0.43
SMG1-208ENST00000563448 HMG20BQ9P0W2 317 aa12.34□□□□□ -0.43
SMG1-208ENST00000563448 POLLQ9UGP5 575 aa12.34□□□□□ -0.43
SMG1-208ENST00000563448 FER1L6Q2WGJ9 1857 aa12.33□□□□□ -0.43
SMG1-208ENST00000563448 RASGRF1Q13972 1273 aa12.33□□□□□ -0.43
SMG1-208ENST00000563448 CAVIN4Q5BKX8 364 aa12.33□□□□□ -0.43
SMG1-208ENST00000563448 C15orf52Q6ZUT6 534 aaKnown RBP12.33□□□□□ -0.43
SMG1-208ENST00000563448 TBC1D16Q8TBP0 767 aa12.33□□□□□ -0.43
SMG1-208ENST00000563448 FSD1Q9BTV5 496 aa12.33□□□□□ -0.43
SMG1-208ENST00000563448 GGA1Q9UJY5 639 aa12.33□□□□□ -0.43
SMG1-208ENST00000563448 ARFGEF1Q9Y6D6 1849 aa12.33□□□□□ -0.43
SMG1-208ENST00000563448 COL1A1P02452 1464 aaPredicted RBP12.33□□□□□ -0.44
SMG1-208ENST00000563448 UFL1O94874 794 aa12.33□□□□□ -0.44
SMG1-208ENST00000563448 MFAP1P55081 439 aaKnown RBP12.33□□□□□ -0.44
SMG1-208ENST00000563448 CASC1Q6TDU7 716 aa12.33□□□□□ -0.44
SMG1-208ENST00000563448 MPNDQ8N594 471 aa12.33□□□□□ -0.44
SMG1-208ENST00000563448 KBTBD3Q8NAB2 608 aa12.33□□□□□ -0.44
SMG1-208ENST00000563448 SPATA5Q8NB90 893 aa12.33□□□□□ -0.44
SMG1-208ENST00000563448 C7orf43Q8WVR3 580 aa12.33□□□□□ -0.44
SMG1-208ENST00000563448 SNED1Q8TER0 1413 aa12.33□□□□□ -0.44
SMG1-208ENST00000563448 ZNF646O15015 1829 aaPredicted RBP12.33□□□□□ -0.44
SMG1-208ENST00000563448 RFX7Q2KHR2 1363 aa12.32□□□□□ -0.44
SMG1-208ENST00000563448 CYP2E1P05181 493 aaPredicted RBP12.32□□□□□ -0.44
SMG1-208ENST00000563448 HIBADHP31937 336 aaKnown RBP12.32□□□□□ -0.44
SMG1-208ENST00000563448 TGFB2P61812 414 aa12.32□□□□□ -0.44
SMG1-208ENST00000563448 ESYT1Q9BSJ8 1104 aa12.32□□□□□ -0.44
SMG1-208ENST00000563448 IL25Q9H293 177 aa12.32□□□□□ -0.44
SMG1-208ENST00000563448 IQSEC3Q9UPP2 1182 aaPredicted RBP12.32□□□□□ -0.44
SMG1-208ENST00000563448 MAST2Q6P0Q8 1798 aa12.32□□□□□ -0.44
SMG1-208ENST00000563448 GNL3LQ9NVN8 582 aaKnown RBP12.32□□□□□ -0.44
SMG1-208ENST00000563448 ZNF219Q9P2Y4 722 aaPredicted RBP12.32□□□□□ -0.44
SMG1-208ENST00000563448 RBM19Q9Y4C8 960 aaKnown RBP12.32□□□□□ -0.44
SMG1-208ENST00000563448 MED23Q9ULK4 1368 aa12.31□□□□□ -0.44
SMG1-208ENST00000563448 PSME4Q14997 1843 aa12.31□□□□□ -0.44
SMG1-208ENST00000563448 CHGBP05060 677 aa12.31□□□□□ -0.44
SMG1-208ENST00000563448 NMIQ13287 307 aaPredicted RBP12.31□□□□□ -0.44
SMG1-208ENST00000563448 VPS37DQ86XT2 251 aa12.31□□□□□ -0.44
SMG1-208ENST00000563448 TTLL6Q8N841 843 aa12.31□□□□□ -0.44
SMG1-208ENST00000563448 TMX4Q9H1E5 349 aaPredicted RBP12.31□□□□□ -0.44
SMG1-208ENST00000563448 PIH1D3Q9NQM4 214 aaKnown RBP12.31□□□□□ -0.44
SMG1-208ENST00000563448 SCN9AQ15858 1988 aa12.3□□□□□ -0.44
SMG1-208ENST00000563448 C6orf229H3BNL8 230 aa12.3□□□□□ -0.44
SMG1-208ENST00000563448 HIP1O00291 1037 aa12.3□□□□□ -0.44
SMG1-208ENST00000563448 ZBTB22O15209 634 aa12.3□□□□□ -0.44
SMG1-208ENST00000563448 CWC27Q6UX04 472 aaKnown RBP12.3□□□□□ -0.44
SMG1-208ENST00000563448 DPP8Q6V1X1 898 aaPredicted RBP12.3□□□□□ -0.44
SMG1-208ENST00000563448 FAM227BQ96M60 508 aa12.3□□□□□ -0.44
SMG1-208ENST00000563448 DIAPH3Q9NSV4 1193 aa12.3□□□□□ -0.44
SMG1-208ENST00000563448 CD2APQ9Y5K6 639 aa12.3□□□□□ -0.44
SMG1-208ENST00000563448 MYH2Q9UKX2 1941 aa12.3□□□□□ -0.44
SMG1-208ENST00000563448 SEMA3EO15041 775 aa12.3□□□□□ -0.44
SMG1-208ENST00000563448 SGSM2O43147 1006 aa12.3□□□□□ -0.44
SMG1-208ENST00000563448 TTF1Q15361 905 aaPredicted RBP12.3□□□□□ -0.44
SMG1-208ENST00000563448 SPON1Q9HCB6 807 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms