RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 EVI5LQ96CN4 794 aa16.52■□□□□ 0.24
VPS39-206ENST00000562662 SGIP1Q9BQI5 828 aa16.52■□□□□ 0.24
VPS39-206ENST00000562662 NDUFB9Q9Y6M9 179 aa16.52■□□□□ 0.24
VPS39-206ENST00000562662 DUOX1Q9NRD9 1551 aa16.51■□□□□ 0.23
VPS39-206ENST00000562662 POLD1P28340 1107 aa16.51■□□□□ 0.23
VPS39-206ENST00000562662 CHRNA5P30532 468 aa16.51■□□□□ 0.23
VPS39-206ENST00000562662 GPSM2P81274 684 aa16.51■□□□□ 0.23
VPS39-206ENST00000562662 SCARF1Q14162 830 aa16.51■□□□□ 0.23
VPS39-206ENST00000562662 SP8Q8IXZ3 490 aa16.51■□□□□ 0.23
VPS39-206ENST00000562662 EDC3Q96F86 508 aaKnown RBP16.51■□□□□ 0.23
VPS39-206ENST00000562662 ZNF804BA4D1E1 1349 aa16.5■□□□□ 0.23
VPS39-206ENST00000562662 CHMLP26374 656 aa16.5■□□□□ 0.23
VPS39-206ENST00000562662 MCAMP43121 646 aa16.5■□□□□ 0.23
VPS39-206ENST00000562662 ZNF622Q969S3 477 aaKnown RBP eCLIP16.5■□□□□ 0.23
VPS39-206ENST00000562662 DNAJC2Q99543 621 aaKnown RBP16.5■□□□□ 0.23
VPS39-206ENST00000562662 PODXL2Q9NZ53 605 aa16.5■□□□□ 0.23
VPS39-206ENST00000562662 LEMD3Q9Y2U8 911 aa16.5■□□□□ 0.23
VPS39-206ENST00000562662 ATP6V0A2Q9Y487 856 aa16.5■□□□□ 0.23
VPS39-206ENST00000562662 RFX7Q2KHR2 1363 aa16.5■□□□□ 0.23
VPS39-206ENST00000562662 UQCRFS1P1P0C7P4 283 aa16.49■□□□□ 0.23
VPS39-206ENST00000562662 KLRK1P26718 216 aa16.49■□□□□ 0.23
VPS39-206ENST00000562662 KCNJ4P48050 445 aa16.49■□□□□ 0.23
VPS39-206ENST00000562662 BCAMP50895 628 aa16.49■□□□□ 0.23
VPS39-206ENST00000562662 PAG1Q9NWQ8 432 aa16.49■□□□□ 0.23
VPS39-206ENST00000562662 ANKIB1Q9P2G1 1089 aa16.49■□□□□ 0.23
VPS39-206ENST00000562662 ATP2B4P23634 1241 aa16.48■□□□□ 0.23
VPS39-206ENST00000562662 FBXO33Q7Z6M2 555 aa16.48■□□□□ 0.23
VPS39-206ENST00000562662 CNKSR1Q969H4 720 aa16.48■□□□□ 0.23
VPS39-206ENST00000562662 FAM84BQ96KN1 310 aaPredicted RBP16.48■□□□□ 0.23
VPS39-206ENST00000562662 GOLIM4O00461 696 aa16.47■□□□□ 0.23
VPS39-206ENST00000562662 PTGER2P43116 358 aa16.47■□□□□ 0.23
VPS39-206ENST00000562662 ZAP70P43403 619 aa16.47■□□□□ 0.23
VPS39-206ENST00000562662 GYG1P46976 350 aa16.47■□□□□ 0.23
VPS39-206ENST00000562662 PRPF40BQ6NWY9 871 aaKnown RBP16.47■□□□□ 0.23
VPS39-206ENST00000562662 CASC1Q6TDU7 716 aa16.47■□□□□ 0.23
VPS39-206ENST00000562662 PI16Q6UXB8 463 aa16.47■□□□□ 0.23
VPS39-206ENST00000562662 C15orf52Q6ZUT6 534 aaKnown RBP16.47■□□□□ 0.23
VPS39-206ENST00000562662 KBTBD3Q8NAB2 608 aa16.47■□□□□ 0.23
VPS39-206ENST00000562662 FSD1Q9BTV5 496 aa16.47■□□□□ 0.23
VPS39-206ENST00000562662 SNRKQ9NRH2 765 aa16.47■□□□□ 0.23
VPS39-206ENST00000562662 COL1A1P02452 1464 aaPredicted RBP16.47■□□□□ 0.23
VPS39-206ENST00000562662 SNED1Q8TER0 1413 aa16.46■□□□□ 0.23
VPS39-206ENST00000562662 ZBTB22O15209 634 aa16.46■□□□□ 0.23
VPS39-206ENST00000562662 KCNA3P22001 575 aa16.46■□□□□ 0.23
VPS39-206ENST00000562662 MFAP1P55081 439 aaKnown RBP16.46■□□□□ 0.23
VPS39-206ENST00000562662 RASGRF1Q13972 1273 aa16.46■□□□□ 0.23
VPS39-206ENST00000562662 OLFM4Q6UX06 510 aa16.46■□□□□ 0.23
VPS39-206ENST00000562662 TXNRD3Q86VQ6 643 aa16.46■□□□□ 0.23
VPS39-206ENST00000562662 ESYT1Q9BSJ8 1104 aa16.46■□□□□ 0.23
VPS39-206ENST00000562662 ANTXR1Q9H6X2 564 aa16.46■□□□□ 0.23
VPS39-206ENST00000562662 HMG20BQ9P0W2 317 aa16.46■□□□□ 0.23
VPS39-206ENST00000562662 GGA1Q9UJY5 639 aa16.46■□□□□ 0.23
VPS39-206ENST00000562662 NSFL1CQ9UNZ2 370 aaKnown RBP16.46■□□□□ 0.23
VPS39-206ENST00000562662 CHD4Q14839 1912 aa16.46■□□□□ 0.23
VPS39-206ENST00000562662 UFL1O94874 794 aa16.45■□□□□ 0.22
VPS39-206ENST00000562662 CYP2E1P05181 493 aaPredicted RBP16.45■□□□□ 0.22
VPS39-206ENST00000562662 DPEP1P16444 411 aa16.45■□□□□ 0.22
VPS39-206ENST00000562662 FKBP4Q02790 459 aaKnown RBP eCLIP16.45■□□□□ 0.22
VPS39-206ENST00000562662 CAVIN4Q5BKX8 364 aa16.45■□□□□ 0.22
VPS39-206ENST00000562662 TICAM2Q86XR7 235 aa16.45■□□□□ 0.22
VPS39-206ENST00000562662 TBC1D16Q8TBP0 767 aa16.45■□□□□ 0.22
VPS39-206ENST00000562662 C7orf43Q8WVR3 580 aa16.45■□□□□ 0.22
VPS39-206ENST00000562662 POLLQ9UGP5 575 aa16.45■□□□□ 0.22
VPS39-206ENST00000562662 RBM19Q9Y4C8 960 aaKnown RBP16.45■□□□□ 0.22
VPS39-206ENST00000562662 CCDC88AQ3V6T2 1871 aa16.44■□□□□ 0.22
VPS39-206ENST00000562662 MED23Q9ULK4 1368 aa16.44■□□□□ 0.22
VPS39-206ENST00000562662 HIP1O00291 1037 aa16.44■□□□□ 0.22
VPS39-206ENST00000562662 HIBADHP31937 336 aaKnown RBP16.44■□□□□ 0.22
VPS39-206ENST00000562662 TGFB2P61812 414 aa16.44■□□□□ 0.22
VPS39-206ENST00000562662 SPATA5Q8NB90 893 aa16.44■□□□□ 0.22
VPS39-206ENST00000562662 GPR101Q96P66 508 aaPredicted RBP16.44■□□□□ 0.22
VPS39-206ENST00000562662 IL25Q9H293 177 aa16.44■□□□□ 0.22
VPS39-206ENST00000562662 GNL3LQ9NVN8 582 aaKnown RBP16.44■□□□□ 0.22
VPS39-206ENST00000562662 MAST2Q6P0Q8 1798 aa16.43■□□□□ 0.22
VPS39-206ENST00000562662 A0A0G2JLW4 131 aa16.43■□□□□ 0.22
VPS39-206ENST00000562662 EIF5BO60841 1220 aaKnown RBP16.43■□□□□ 0.22
VPS39-206ENST00000562662 NMIQ13287 307 aaPredicted RBP16.43■□□□□ 0.22
VPS39-206ENST00000562662 MPNDQ8N594 471 aa16.43■□□□□ 0.22
VPS39-206ENST00000562662 DIAPH3Q9NSV4 1193 aa16.43■□□□□ 0.22
VPS39-206ENST00000562662 PDS5AQ29RF7 1337 aaKnown RBP16.43■□□□□ 0.22
VPS39-206ENST00000562662 SEMA3EO15041 775 aa16.42■□□□□ 0.22
VPS39-206ENST00000562662 SGSM2O43147 1006 aa16.42■□□□□ 0.22
VPS39-206ENST00000562662 CWC27Q6UX04 472 aaKnown RBP16.42■□□□□ 0.22
VPS39-206ENST00000562662 VPS37DQ86XT2 251 aa16.42■□□□□ 0.22
VPS39-206ENST00000562662 TTLL6Q8N841 843 aa16.42■□□□□ 0.22
VPS39-206ENST00000562662 PIH1D3Q9NQM4 214 aaKnown RBP16.42■□□□□ 0.22
VPS39-206ENST00000562662 DENND2AQ9ULE3 1009 aa16.42■□□□□ 0.22
VPS39-206ENST00000562662 IQSEC3Q9UPP2 1182 aaPredicted RBP16.42■□□□□ 0.22
VPS39-206ENST00000562662 ZNF646O15015 1829 aaPredicted RBP16.41■□□□□ 0.22
VPS39-206ENST00000562662 ARFGEF1Q9Y6D6 1849 aa16.41■□□□□ 0.22
VPS39-206ENST00000562662 A0A0D9SFI3 127 aa16.41■□□□□ 0.22
VPS39-206ENST00000562662 CHGBP05060 677 aa16.41■□□□□ 0.22
VPS39-206ENST00000562662 TTF1Q15361 905 aaPredicted RBP16.41■□□□□ 0.22
VPS39-206ENST00000562662 DPP8Q6V1X1 898 aaPredicted RBP16.41■□□□□ 0.22
VPS39-206ENST00000562662 FAM227BQ96M60 508 aa16.41■□□□□ 0.22
VPS39-206ENST00000562662 TBC1D32Q96NH3 1257 aa16.41■□□□□ 0.22
VPS39-206ENST00000562662 TMX4Q9H1E5 349 aaPredicted RBP16.41■□□□□ 0.22
VPS39-206ENST00000562662 CD2APQ9Y5K6 639 aa16.41■□□□□ 0.22
VPS39-206ENST00000562662 FER1L6Q2WGJ9 1857 aa16.41■□□□□ 0.22
VPS39-206ENST00000562662 RAD50Q92878 1312 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms