RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 FMR1Q06787 632 aaKnown RBP eCLIP6.04□□□□□ -1.44
VPS35-203ENST00000562420 MSL1Q68DK7 614 aa6.04□□□□□ -1.44
VPS35-203ENST00000562420 HFE2Q6ZVN8 426 aa6.04□□□□□ -1.44
VPS35-203ENST00000562420 MAP4K3Q8IVH8 894 aa6.04□□□□□ -1.44
VPS35-203ENST00000562420 TMEM102Q8N9M5 508 aaPredicted RBP6.04□□□□□ -1.44
VPS35-203ENST00000562420 DCAF11Q8TEB1 546 aa6.04□□□□□ -1.44
VPS35-203ENST00000562420 NUDT8Q8WV74 236 aa6.04□□□□□ -1.44
VPS35-203ENST00000562420 DZANK1Q9NVP4 752 aa6.04□□□□□ -1.44
VPS35-203ENST00000562420 KANSL3Q9P2N6 904 aa6.04□□□□□ -1.44
VPS35-203ENST00000562420 NFKBIEO00221 500 aa6.03□□□□□ -1.44
VPS35-203ENST00000562420 ERCC3P19447 782 aa6.03□□□□□ -1.44
VPS35-203ENST00000562420 C8orf86Q6ZUL3 223 aa6.03□□□□□ -1.44
VPS35-203ENST00000562420 TMC1Q8TDI8 760 aa6.03□□□□□ -1.44
VPS35-203ENST00000562420 CSRNP1Q96S65 589 aa6.03□□□□□ -1.44
VPS35-203ENST00000562420 PLVAPQ9BX97 442 aa6.03□□□□□ -1.44
VPS35-203ENST00000562420 BHLHE41Q9C0J9 482 aaPredicted RBP6.03□□□□□ -1.44
VPS35-203ENST00000562420 ADAM19Q9H013 955 aa6.03□□□□□ -1.44
VPS35-203ENST00000562420 ZBTB7CA1YPR0 619 aa6.02□□□□□ -1.45
VPS35-203ENST00000562420 C1QTNF9BB2RNN3 333 aa6.02□□□□□ -1.45
VPS35-203ENST00000562420 EIF1AYO14602 144 aaKnown RBP6.02□□□□□ -1.45
VPS35-203ENST00000562420 ATP11AP98196 1134 aa6.02□□□□□ -1.45
VPS35-203ENST00000562420 ENOX2Q16206 610 aaKnown RBP6.02□□□□□ -1.45
VPS35-203ENST00000562420 PRRT3Q5FWE3 981 aa6.02□□□□□ -1.45
VPS35-203ENST00000562420 KIAA0319Q5VV43 1072 aa6.02□□□□□ -1.45
VPS35-203ENST00000562420 PEAR1Q5VY43 1037 aaPredicted RBP6.02□□□□□ -1.45
VPS35-203ENST00000562420 WFDC8Q8IUA0 241 aa6.02□□□□□ -1.45
VPS35-203ENST00000562420 FBF1Q8TES7 1133 aa6.02□□□□□ -1.45
VPS35-203ENST00000562420 NIF3L1Q9GZT8 377 aa6.02□□□□□ -1.45
VPS35-203ENST00000562420 RASSF4Q9H2L5 321 aa6.02□□□□□ -1.45
VPS35-203ENST00000562420 BTBD11A6QL63 1104 aa6.01□□□□□ -1.45
VPS35-203ENST00000562420 PTPRAP18433 802 aa6.01□□□□□ -1.45
VPS35-203ENST00000562420 RAC1P63000 192 aa6.01□□□□□ -1.45
VPS35-203ENST00000562420 FGD1P98174 961 aa6.01□□□□□ -1.45
VPS35-203ENST00000562420 ORC1Q13415 861 aa6.01□□□□□ -1.45
VPS35-203ENST00000562420 WNT8BQ93098 351 aa6.01□□□□□ -1.45
VPS35-203ENST00000562420 ZKSCAN3Q9BRR0 538 aa6.01□□□□□ -1.45
VPS35-203ENST00000562420 A0A0A0MRY4 1105 aa6□□□□□ -1.45
VPS35-203ENST00000562420 PDE2AO00408 941 aaPredicted RBP6□□□□□ -1.45
VPS35-203ENST00000562420 ELNP15502 786 aa6□□□□□ -1.45
VPS35-203ENST00000562420 PLCB3Q01970 1234 aa6□□□□□ -1.45
VPS35-203ENST00000562420 CCDC27Q2M243 656 aa6□□□□□ -1.45
VPS35-203ENST00000562420 LCE3BQ5TA77 95 aa6□□□□□ -1.45
VPS35-203ENST00000562420 CEP135Q66GS9 1140 aa6□□□□□ -1.45
VPS35-203ENST00000562420 PRPF40BQ6NWY9 871 aaKnown RBP6□□□□□ -1.45
VPS35-203ENST00000562420 DNAJC14Q6Y2X3 702 aaPredicted RBP6□□□□□ -1.45
VPS35-203ENST00000562420 CD163Q86VB7 1156 aa6□□□□□ -1.45
VPS35-203ENST00000562420 FMR1NBQ8N0W7 255 aaPredicted RBP6□□□□□ -1.45
VPS35-203ENST00000562420 NXPE3Q969Y0 559 aa6□□□□□ -1.45
VPS35-203ENST00000562420 CCDC74AQ96AQ1 378 aa6□□□□□ -1.45
VPS35-203ENST00000562420 NACC1Q96RE7 527 aa6□□□□□ -1.45
VPS35-203ENST00000562420 POP1Q99575 1024 aaKnown RBP6□□□□□ -1.45
VPS35-203ENST00000562420 OSMRQ99650 979 aa6□□□□□ -1.45
VPS35-203ENST00000562420 TRIM33Q9UPN9 1127 aa6□□□□□ -1.45
VPS35-203ENST00000562420 A0A1W2PP55 124 aa5.99□□□□□ -1.45
VPS35-203ENST00000562420 FAM177BA6PVY3 158 aa5.99□□□□□ -1.45
VPS35-203ENST00000562420 EIF4EBP3O60516 100 aaPredicted RBP5.99□□□□□ -1.45
VPS35-203ENST00000562420 CDC27P30260 824 aa5.99□□□□□ -1.45
VPS35-203ENST00000562420 CHRNA4P43681 627 aa5.99□□□□□ -1.45
VPS35-203ENST00000562420 PTPN12Q05209 780 aaKnown RBP5.99□□□□□ -1.45
VPS35-203ENST00000562420 TRIM28Q13263 835 aaKnown RBP5.99□□□□□ -1.45
VPS35-203ENST00000562420 TRAPPC3LQ5T215 181 aa5.99□□□□□ -1.45
VPS35-203ENST00000562420 FBXO11Q86XK2 927 aa5.99□□□□□ -1.45
VPS35-203ENST00000562420 CCNJLQ8IV13 435 aa5.99□□□□□ -1.45
VPS35-203ENST00000562420 GZF1Q9H116 711 aaPredicted RBP5.99□□□□□ -1.45
VPS35-203ENST00000562420 SOX13Q9UN79 622 aa5.99□□□□□ -1.45
VPS35-203ENST00000562420 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.99□□□□□ -1.45
VPS35-203ENST00000562420 DOC2BQ14184 412 aa5.98□□□□□ -1.45
VPS35-203ENST00000562420 USPL1Q5W0Q7 1092 aa5.98□□□□□ -1.45
VPS35-203ENST00000562420 ALG1LQ6GMV1 187 aa5.98□□□□□ -1.45
VPS35-203ENST00000562420 GDF6Q6KF10 455 aaPredicted RBP5.98□□□□□ -1.45
VPS35-203ENST00000562420 IL22RA1Q8N6P7 574 aa5.98□□□□□ -1.45
VPS35-203ENST00000562420 BSNDQ8WZ55 320 aa5.98□□□□□ -1.45
VPS35-203ENST00000562420 NPHS2Q9NP85 383 aa5.98□□□□□ -1.45
VPS35-203ENST00000562420 TRAK1Q9UPV9 953 aa5.98□□□□□ -1.45
VPS35-203ENST00000562420 PPME1Q9Y570 386 aa5.98□□□□□ -1.45
VPS35-203ENST00000562420 PNMA6FA0A0J9YX94 578 aa5.97□□□□□ -1.45
VPS35-203ENST00000562420 H3BRJ5 948 aa5.97□□□□□ -1.45
VPS35-203ENST00000562420 ACPPP15309 386 aa5.97□□□□□ -1.45
VPS35-203ENST00000562420 CABP4P57796 275 aa5.97□□□□□ -1.45
VPS35-203ENST00000562420 ATP2B2Q01814 1243 aa5.97□□□□□ -1.45
VPS35-203ENST00000562420 DMRTC2Q8IXT2 367 aaPredicted RBP5.97□□□□□ -1.45
VPS35-203ENST00000562420 FRMD6Q96NE9 622 aa5.97□□□□□ -1.45
VPS35-203ENST00000562420 TCF12Q99081 682 aa5.97□□□□□ -1.45
VPS35-203ENST00000562420 SRCIN1Q9C0H9 1055 aa5.97□□□□□ -1.45
VPS35-203ENST00000562420 SEMA6BQ9H3T3 888 aa5.97□□□□□ -1.45
VPS35-203ENST00000562420 SOX17Q9H6I2 414 aaPredicted RBP5.97□□□□□ -1.45
VPS35-203ENST00000562420 LIN7BQ9HAP6 207 aa5.97□□□□□ -1.45
VPS35-203ENST00000562420 OSGEPQ9NPF4 335 aa5.97□□□□□ -1.45
VPS35-203ENST00000562420 LATS2Q9NRM7 1088 aa5.97□□□□□ -1.45
VPS35-203ENST00000562420 ANKRD33BA6NCL7 494 aa5.96□□□□□ -1.46
VPS35-203ENST00000562420 DLL1O00548 723 aa5.96□□□□□ -1.46
VPS35-203ENST00000562420 GIPC1O14908 333 aa5.96□□□□□ -1.46
VPS35-203ENST00000562420 ITPKAP23677 461 aa5.96□□□□□ -1.46
VPS35-203ENST00000562420 ITGB7P26010 798 aa5.96□□□□□ -1.46
VPS35-203ENST00000562420 PIP4K2BP78356 416 aa5.96□□□□□ -1.46
VPS35-203ENST00000562420 NRG1Q02297 640 aaPredicted RBP5.96□□□□□ -1.46
VPS35-203ENST00000562420 SETDB1Q15047 1291 aa5.96□□□□□ -1.46
VPS35-203ENST00000562420 FAM117BQ6P1L5 589 aa5.96□□□□□ -1.46
VPS35-203ENST00000562420 NPAS4Q8IUM7 802 aa5.96□□□□□ -1.46
VPS35-203ENST00000562420 KLHL23Q8NBE8 558 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms