RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 NEURL1BA8MQ27 555 aa21.15■□□□□ 0.98
CLN3-208ENST00000561505 CCDC85AQ96PX6 553 aaPredicted RBP21.15■□□□□ 0.98
CLN3-208ENST00000561505 GREM2Q9H772 168 aa21.15■□□□□ 0.98
CLN3-208ENST00000561505 PAPPA2Q9BXP8 1791 aa21.15■□□□□ 0.98
CLN3-208ENST00000561505 SLC34A2O95436 690 aa21.14■□□□□ 0.97
CLN3-208ENST00000561505 CCT4P50991 539 aaKnown RBP21.14■□□□□ 0.97
CLN3-208ENST00000561505 RASAL3Q86YV0 1011 aa21.14■□□□□ 0.97
CLN3-208ENST00000561505 CASP7P55210 303 aa21.13■□□□□ 0.97
CLN3-208ENST00000561505 STRIP1Q5VSL9 837 aa21.13■□□□□ 0.97
CLN3-208ENST00000561505 LEMD3Q9Y2U8 911 aa21.13■□□□□ 0.97
CLN3-208ENST00000561505 MYH3P11055 1940 aa21.12■□□□□ 0.97
CLN3-208ENST00000561505 IL16Q14005 1332 aa21.12■□□□□ 0.97
CLN3-208ENST00000561505 MYO3BQ8WXR4 1341 aa21.12■□□□□ 0.97
CLN3-208ENST00000561505 TRPA1O75762 1119 aa21.12■□□□□ 0.97
CLN3-208ENST00000561505 CSF1RP07333 972 aa21.12■□□□□ 0.97
CLN3-208ENST00000561505 NEXNQ0ZGT2 675 aa21.12■□□□□ 0.97
CLN3-208ENST00000561505 CWF19L2Q2TBE0 894 aaKnown RBP21.12■□□□□ 0.97
CLN3-208ENST00000561505 G2E3Q7L622 706 aa21.12■□□□□ 0.97
CLN3-208ENST00000561505 COA1Q9GZY4 146 aa21.12■□□□□ 0.97
CLN3-208ENST00000561505 NBPF9Q3BBW0 867 aa21.11■□□□□ 0.97
CLN3-208ENST00000561505 TXNRD3Q86VQ6 643 aa21.11■□□□□ 0.97
CLN3-208ENST00000561505 WWC1Q8IX03 1113 aa21.11■□□□□ 0.97
CLN3-208ENST00000561505 TSR2Q969E8 191 aaKnown RBP21.11■□□□□ 0.97
CLN3-208ENST00000561505 ZBED3Q96IU2 234 aaPredicted RBP21.11■□□□□ 0.97
CLN3-208ENST00000561505 AKAP11Q9UKA4 1901 aa21.1■□□□□ 0.97
CLN3-208ENST00000561505 WNT10BO00744 389 aa21.1■□□□□ 0.97
CLN3-208ENST00000561505 STK31Q9BXU1 1019 aa21.1■□□□□ 0.97
CLN3-208ENST00000561505 TNRC18O15417 2968 aaPredicted RBP21.09■□□□□ 0.97
CLN3-208ENST00000561505 GCKRQ14397 625 aa21.09■□□□□ 0.97
CLN3-208ENST00000561505 TWISTNBQ3B726 338 aaPredicted RBP21.09■□□□□ 0.97
CLN3-208ENST00000561505 NOM1Q5C9Z4 860 aaKnown RBP21.09■□□□□ 0.97
CLN3-208ENST00000561505 IRS2Q9Y4H2 1338 aa21.08■□□□□ 0.97
CLN3-208ENST00000561505 SLC4A2P04920 1241 aa21.08■□□□□ 0.97
CLN3-208ENST00000561505 TM4SF4P48230 202 aa21.08■□□□□ 0.97
CLN3-208ENST00000561505 CCDC184Q52MB2 194 aa21.08■□□□□ 0.97
CLN3-208ENST00000561505 UBE3BQ7Z3V4 1068 aa21.08■□□□□ 0.97
CLN3-208ENST00000561505 C15orf52Q6ZUT6 534 aaKnown RBP21.07■□□□□ 0.96
CLN3-208ENST00000561505 OGFOD1Q8N543 542 aa21.07■□□□□ 0.96
CLN3-208ENST00000561505 MXD3Q9BW11 206 aa21.07■□□□□ 0.96
CLN3-208ENST00000561505 ANKRD2Q9GZV1 360 aa21.07■□□□□ 0.96
CLN3-208ENST00000561505 ZNF804BA4D1E1 1349 aa21.06■□□□□ 0.96
CLN3-208ENST00000561505 MOB2Q70IA6 237 aa21.06■□□□□ 0.96
CLN3-208ENST00000561505 CTU1Q7Z7A3 348 aaKnown RBP21.06■□□□□ 0.96
CLN3-208ENST00000561505 LINS1Q8NG48 757 aa21.06■□□□□ 0.96
CLN3-208ENST00000561505 CFHR5Q9BXR6 569 aa21.06■□□□□ 0.96
CLN3-208ENST00000561505 ITGA6P23229 1130 aa21.05■□□□□ 0.96
CLN3-208ENST00000561505 IGHMBP2P38935 993 aaKnown RBP21.05■□□□□ 0.96
CLN3-208ENST00000561505 FLIIQ13045 1269 aa21.05■□□□□ 0.96
CLN3-208ENST00000561505 UBE2Q2LH0YL09 131 aa21.04■□□□□ 0.96
CLN3-208ENST00000561505 LDLRAD1Q5T700 205 aa21.04■□□□□ 0.96
CLN3-208ENST00000561505 TTLL5Q6EMB2 1281 aa21.04■□□□□ 0.96
CLN3-208ENST00000561505 KLRK1P26718 216 aa21.03■□□□□ 0.96
CLN3-208ENST00000561505 PRAMEF18Q5VWM3 479 aa21.03■□□□□ 0.96
CLN3-208ENST00000561505 MTMR14Q8NCE2 650 aa21.03■□□□□ 0.96
CLN3-208ENST00000561505 DNAAF4Q8WXU2 420 aa21.03■□□□□ 0.96
CLN3-208ENST00000561505 SCAF8Q9UPN6 1271 aaKnown RBP21.03■□□□□ 0.96
CLN3-208ENST00000561505 SPEF2Q9C093 1822 aa21.03■□□□□ 0.96
CLN3-208ENST00000561505 VAMP4O75379 141 aa21.02■□□□□ 0.96
CLN3-208ENST00000561505 MYH16Q9H6N6 1097 aa21.02■□□□□ 0.96
CLN3-208ENST00000561505 CACNA1FO60840 1977 aa21.02■□□□□ 0.96
CLN3-208ENST00000561505 CHRNDQ07001 517 aa21.01■□□□□ 0.95
CLN3-208ENST00000561505 PKN2Q16513 984 aaKnown RBP21.01■□□□□ 0.95
CLN3-208ENST00000561505 APOBEC3FQ8IUX4 373 aaKnown RBP21.01■□□□□ 0.95
CLN3-208ENST00000561505 CD209Q9NNX6 404 aa21.01■□□□□ 0.95
CLN3-208ENST00000561505 COL1A1P02452 1464 aaPredicted RBP21.01■□□□□ 0.95
CLN3-208ENST00000561505 FOXO4P98177 505 aa21■□□□□ 0.95
CLN3-208ENST00000561505 MAP3K11Q16584 847 aa21■□□□□ 0.95
CLN3-208ENST00000561505 WDR63Q8IWG1 891 aa21■□□□□ 0.95
CLN3-208ENST00000561505 MPHOSPH8Q99549 860 aa21■□□□□ 0.95
CLN3-208ENST00000561505 IL1R1P14778 569 aa20.99■□□□□ 0.95
CLN3-208ENST00000561505 NF2P35240 595 aa20.99■□□□□ 0.95
CLN3-208ENST00000561505 FKBP1AP62942 108 aaKnown RBP20.99■□□□□ 0.95
CLN3-208ENST00000561505 GTF2IP78347 998 aa20.99■□□□□ 0.95
CLN3-208ENST00000561505 PTPN12Q05209 780 aaKnown RBP20.99■□□□□ 0.95
CLN3-208ENST00000561505 CERS5Q8N5B7 392 aa20.99■□□□□ 0.95
CLN3-208ENST00000561505 ZNF296Q8WUU4 475 aaPredicted RBP20.99■□□□□ 0.95
CLN3-208ENST00000561505 HDAC9Q9UKV0 1011 aa20.99■□□□□ 0.95
CLN3-208ENST00000561505 FANCIQ9NVI1 1328 aa20.99■□□□□ 0.95
CLN3-208ENST00000561505 UNCXA6NJT0 531 aa20.98■□□□□ 0.95
CLN3-208ENST00000561505 SASH1O94885 1247 aa20.98■□□□□ 0.95
CLN3-208ENST00000561505 BEND3Q5T5X7 828 aa20.98■□□□□ 0.95
CLN3-208ENST00000561505 KIAA0825Q8IV33 1275 aa20.98■□□□□ 0.95
CLN3-208ENST00000561505 ANKRD18BA2A2Z9 1011 aa20.97■□□□□ 0.95
CLN3-208ENST00000561505 FKBP5Q13451 457 aaPredicted RBP20.97■□□□□ 0.95
CLN3-208ENST00000561505 HPS5Q9UPZ3 1129 aa20.97■□□□□ 0.95
CLN3-208ENST00000561505 GPR25O00155 361 aa20.96■□□□□ 0.95
CLN3-208ENST00000561505 TBC1D8O95759 1140 aa20.96■□□□□ 0.95
CLN3-208ENST00000561505 SREBF2Q12772 1141 aa20.96■□□□□ 0.95
CLN3-208ENST00000561505 SPRYD7Q5W111 196 aa20.96■□□□□ 0.95
CLN3-208ENST00000561505 ARMC9Q7Z3E5 817 aa20.96■□□□□ 0.95
CLN3-208ENST00000561505 PPP2R3BQ9Y5P8 575 aa20.96■□□□□ 0.95
CLN3-208ENST00000561505 PDE4DIPQ5VU43 2346 aa20.96■□□□□ 0.95
CLN3-208ENST00000561505 SNAP23O00161 211 aa20.95■□□□□ 0.94
CLN3-208ENST00000561505 DEFB129Q9H1M3 183 aa20.95■□□□□ 0.94
CLN3-208ENST00000561505 LAMB1P07942 1786 aa20.95■□□□□ 0.94
CLN3-208ENST00000561505 SOX10P56693 466 aa20.94■□□□□ 0.94
CLN3-208ENST00000561505 INHBEP58166 350 aa20.94■□□□□ 0.94
CLN3-208ENST00000561505 FBXW7Q969H0 707 aa20.94■□□□□ 0.94
CLN3-208ENST00000561505 A0A1B0GUL6 1792 aa20.94■□□□□ 0.94
CLN3-208ENST00000561505 SSC5DA1L4H1 1573 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms