RNA–Protein interactions for RNA: ENST00000561391.1

SPG11-225, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 629 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-225ENST00000561391 PDGFDQ9GZP0 370 aaPredicted RBP5.09□□□□□ -1.59
SPG11-225ENST00000561391 TPSG1Q9NRR2 321 aa5.09□□□□□ -1.59
SPG11-225ENST00000561391 MKRN1Q9UHC7 482 aaKnown RBP5.09□□□□□ -1.59
SPG11-225ENST00000561391 WWC3Q9ULE0 1092 aa5.09□□□□□ -1.59
SPG11-225ENST00000561391 PIK3C2BO00750 1634 aa5.08□□□□□ -1.6
SPG11-225ENST00000561391 PLEKHH2Q8IVE3 1493 aa5.08□□□□□ -1.6
SPG11-225ENST00000561391 KHNYNO15037 678 aaKnown RBP5.08□□□□□ -1.6
SPG11-225ENST00000561391 RASA1P20936 1047 aa5.08□□□□□ -1.6
SPG11-225ENST00000561391 XPCQ01831 940 aaPredicted RBP5.08□□□□□ -1.6
SPG11-225ENST00000561391 USP4Q13107 963 aa5.08□□□□□ -1.6
SPG11-225ENST00000561391 NKAPLQ5M9Q1 402 aa5.08□□□□□ -1.6
SPG11-225ENST00000561391 AIDAQ96BJ3 306 aa5.08□□□□□ -1.6
SPG11-225ENST00000561391 XAGE2Q96GT9 111 aa5.08□□□□□ -1.6
SPG11-225ENST00000561391 AVENQ9NQS1 362 aaPredicted RBP5.08□□□□□ -1.6
SPG11-225ENST00000561391 PRR12Q9ULL5 1215 aa5.08□□□□□ -1.6
SPG11-225ENST00000561391 NOD1Q9Y239 953 aa5.08□□□□□ -1.6
SPG11-225ENST00000561391 UTRNP46939 3433 aa5.08□□□□□ -1.6
SPG11-225ENST00000561391 FMN1Q68DA7 1419 aa5.07□□□□□ -1.6
SPG11-225ENST00000561391 YBX3P16989 372 aaKnown RBP eCLIP5.07□□□□□ -1.6
SPG11-225ENST00000561391 PCBP4P57723 403 aaKnown RBP5.07□□□□□ -1.6
SPG11-225ENST00000561391 ARSJQ5FYB0 599 aaPredicted RBP5.07□□□□□ -1.6
SPG11-225ENST00000561391 PRSS36Q5K4E3 855 aa5.07□□□□□ -1.6
SPG11-225ENST00000561391 KANK4Q5T7N3 995 aaPredicted RBP5.07□□□□□ -1.6
SPG11-225ENST00000561391 NLRP8Q86W28 1048 aa5.07□□□□□ -1.6
SPG11-225ENST00000561391 PPARGC1BQ86YN6 1023 aaKnown RBP5.07□□□□□ -1.6
SPG11-225ENST00000561391 HOMEZQ8IX15 550 aa5.07□□□□□ -1.6
SPG11-225ENST00000561391 C1orf216Q8TAB5 229 aa5.07□□□□□ -1.6
SPG11-225ENST00000561391 ARXQ96QS3 562 aa5.07□□□□□ -1.6
SPG11-225ENST00000561391 NACC1Q96RE7 527 aa5.07□□□□□ -1.6
SPG11-225ENST00000561391 HRH3Q9Y5N1 445 aa5.07□□□□□ -1.6
SPG11-225ENST00000561391 GJA3Q9Y6H8 435 aa5.07□□□□□ -1.6
SPG11-225ENST00000561391 EFCAB6Q5THR3 1501 aa5.07□□□□□ -1.6
SPG11-225ENST00000561391 SPHKAPQ2M3C7 1700 aa5.06□□□□□ -1.6
SPG11-225ENST00000561391 CCNB3Q8WWL7 1395 aa5.06□□□□□ -1.6
SPG11-225ENST00000561391 LZTS3O60299 673 aaPredicted RBP5.06□□□□□ -1.6
SPG11-225ENST00000561391 TSPY4P0CV99 314 aa5.06□□□□□ -1.6
SPG11-225ENST00000561391 TSPY10P0CW01 314 aa5.06□□□□□ -1.6
SPG11-225ENST00000561391 MAPTP10636 758 aaKnown RBP5.06□□□□□ -1.6
SPG11-225ENST00000561391 ALAS2P22557 587 aa5.06□□□□□ -1.6
SPG11-225ENST00000561391 PSME1Q06323 249 aa5.06□□□□□ -1.6
SPG11-225ENST00000561391 LARP1Q6PKG0 1096 aaKnown RBP5.06□□□□□ -1.6
SPG11-225ENST00000561391 PLEKHM2Q8IWE5 1019 aa5.06□□□□□ -1.6
SPG11-225ENST00000561391 SIRT1Q96EB6 747 aa5.06□□□□□ -1.6
SPG11-225ENST00000561391 ZNF594Q96JF6 807 aaPredicted RBP5.06□□□□□ -1.6
SPG11-225ENST00000561391 DNAAF2Q9NVR5 837 aaKnown RBP5.06□□□□□ -1.6
SPG11-225ENST00000561391 CHIC2Q9UKJ5 165 aa5.06□□□□□ -1.6
SPG11-225ENST00000561391 PLEKHG1Q9ULL1 1385 aa5.05□□□□□ -1.6
SPG11-225ENST00000561391 ATP4AP20648 1035 aa5.05□□□□□ -1.6
SPG11-225ENST00000561391 GTF2IP78347 998 aa5.05□□□□□ -1.6
SPG11-225ENST00000561391 NBPF1Q3BBV0 1214 aa5.05□□□□□ -1.6
SPG11-225ENST00000561391 ZNF468Q5VIY5 522 aaPredicted RBP5.05□□□□□ -1.6
SPG11-225ENST00000561391 FAM196AQ6ZSG2 479 aa5.05□□□□□ -1.6
SPG11-225ENST00000561391 TRIM50Q86XT4 487 aa5.05□□□□□ -1.6
SPG11-225ENST00000561391 OGFOD1Q8N543 542 aa5.05□□□□□ -1.6
SPG11-225ENST00000561391 ETNK1Q9HBU6 452 aa5.05□□□□□ -1.6
SPG11-225ENST00000561391 KLF15Q9UIH9 416 aa5.05□□□□□ -1.6
SPG11-225ENST00000561391 SLIT2O94813 1529 aa5.05□□□□□ -1.6
SPG11-225ENST00000561391 RGPD1P0DJD0 1748 aa5.05□□□□□ -1.6
SPG11-225ENST00000561391 LRRIQ1Q96JM4 1722 aa5.05□□□□□ -1.6
SPG11-225ENST00000561391 MBD5Q9P267 1494 aa5.05□□□□□ -1.6
SPG11-225ENST00000561391 DISP2A7MBM2 1401 aa5.05□□□□□ -1.6
SPG11-225ENST00000561391 ADGRL3Q9HAR2 1447 aa5.05□□□□□ -1.6
SPG11-225ENST00000561391 NRKQ7Z2Y5 1582 aa5.04□□□□□ -1.6
SPG11-225ENST00000561391 ELOA3CA0A087WX78 387 aaPredicted RBP5.04□□□□□ -1.6
SPG11-225ENST00000561391 A0A1W2PNR3 127 aa5.04□□□□□ -1.6
SPG11-225ENST00000561391 ELOA3DA6NLF2 546 aaPredicted RBP5.04□□□□□ -1.6
SPG11-225ENST00000561391 FAM229AH3BQW9 127 aa5.04□□□□□ -1.6
SPG11-225ENST00000561391 FOXO3O43524 673 aa5.04□□□□□ -1.6
SPG11-225ENST00000561391 STAU1O95793 577 aaKnown RBP5.04□□□□□ -1.6
SPG11-225ENST00000561391 TATP17735 454 aaPredicted RBP5.04□□□□□ -1.6
SPG11-225ENST00000561391 ATP1A2P50993 1020 aa5.04□□□□□ -1.6
SPG11-225ENST00000561391 SRPK2P78362 688 aaKnown RBP5.04□□□□□ -1.6
SPG11-225ENST00000561391 CLDN10P78369 228 aa5.04□□□□□ -1.6
SPG11-225ENST00000561391 HTRA3P83110 453 aa5.04□□□□□ -1.6
SPG11-225ENST00000561391 TNP2Q05952 138 aa5.04□□□□□ -1.6
SPG11-225ENST00000561391 LRP8Q14114 963 aa5.04□□□□□ -1.6
SPG11-225ENST00000561391 ELOA3BQ3SY89 546 aa5.04□□□□□ -1.6
SPG11-225ENST00000561391 CRTC2Q53ET0 693 aaPredicted RBP5.04□□□□□ -1.6
SPG11-225ENST00000561391 ELOA3Q8NG57 546 aa5.04□□□□□ -1.6
SPG11-225ENST00000561391 NIFKQ9BYG3 293 aaKnown RBP5.04□□□□□ -1.6
SPG11-225ENST00000561391 RBM19Q9Y4C8 960 aaKnown RBP5.04□□□□□ -1.6
SPG11-225ENST00000561391 MYOM2P54296 1465 aa5.04□□□□□ -1.6
SPG11-225ENST00000561391 PTPRUQ92729 1446 aa5.04□□□□□ -1.6
SPG11-225ENST00000561391 CEP152O94986 1710 aa5.03□□□□□ -1.6
SPG11-225ENST00000561391 C1orf167Q5SNV9 1468 aa5.03□□□□□ -1.6
SPG11-225ENST00000561391 CARNS1A5YM72 827 aa5.03□□□□□ -1.6
SPG11-225ENST00000561391 USP17L15C9J2P7 530 aa5.03□□□□□ -1.6
SPG11-225ENST00000561391 USP17L10C9JJH3 530 aa5.03□□□□□ -1.6
SPG11-225ENST00000561391 USP17L13C9JLJ4 530 aa5.03□□□□□ -1.6
SPG11-225ENST00000561391 USP17L12C9JPN9 530 aa5.03□□□□□ -1.6
SPG11-225ENST00000561391 USP17L11C9JVI0 530 aa5.03□□□□□ -1.6
SPG11-225ENST00000561391 USP17L21D6R901 530 aa5.03□□□□□ -1.6
SPG11-225ENST00000561391 USP17L18D6R9N7 530 aa5.03□□□□□ -1.6
SPG11-225ENST00000561391 USP17L22D6RA61 530 aa5.03□□□□□ -1.6
SPG11-225ENST00000561391 USP17L17D6RBQ6 530 aa5.03□□□□□ -1.6
SPG11-225ENST00000561391 USP17L19D6RCP7 530 aa5.03□□□□□ -1.6
SPG11-225ENST00000561391 USP17L20D6RJB6 530 aa5.03□□□□□ -1.6
SPG11-225ENST00000561391 USP17L24Q0WX57 530 aa5.03□□□□□ -1.6
SPG11-225ENST00000561391 TRIM28Q13263 835 aaKnown RBP5.03□□□□□ -1.6
SPG11-225ENST00000561391 LAMC2Q13753 1193 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms