RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 CNTLNQ9NXG0 1405 aa8.88□□□□□ -0.99
LRRC28-220ENST00000561253 UBAP2LQ14157 1087 aaKnown RBP8.87□□□□□ -0.99
LRRC28-220ENST00000561253 GGT6Q6P531 493 aa8.87□□□□□ -0.99
LRRC28-220ENST00000561253 TRERF1Q96PN7 1200 aa8.87□□□□□ -0.99
LRRC28-220ENST00000561253 FAM129BQ96TA1 746 aa8.87□□□□□ -0.99
LRRC28-220ENST00000561253 PHF24Q9UPV7 400 aa8.87□□□□□ -0.99
LRRC28-220ENST00000561253 KCNH4Q9UQ05 1017 aa8.87□□□□□ -0.99
LRRC28-220ENST00000561253 ARHGAP31Q2M1Z3 1444 aa8.87□□□□□ -0.99
LRRC28-220ENST00000561253 UBAP1LF5GYI3 381 aa8.86□□□□□ -0.99
LRRC28-220ENST00000561253 EFSO43281 561 aa8.86□□□□□ -0.99
LRRC28-220ENST00000561253 BNIP3LO60238 219 aa8.86□□□□□ -0.99
LRRC28-220ENST00000561253 MAPTP10636 758 aaKnown RBP8.86□□□□□ -0.99
LRRC28-220ENST00000561253 TNP2Q05952 138 aa8.86□□□□□ -0.99
LRRC28-220ENST00000561253 LAMC2Q13753 1193 aa8.86□□□□□ -0.99
LRRC28-220ENST00000561253 SV2AQ7L0J3 742 aa8.86□□□□□ -0.99
LRRC28-220ENST00000561253 VWA5B2Q8N398 1253 aa8.86□□□□□ -0.99
LRRC28-220ENST00000561253 FOXD4L4Q8WXT5 416 aaPredicted RBP8.86□□□□□ -0.99
LRRC28-220ENST00000561253 ABHD17AQ96GS6 310 aa8.86□□□□□ -0.99
LRRC28-220ENST00000561253 GGNBP2Q9H3C7 697 aa8.86□□□□□ -0.99
LRRC28-220ENST00000561253 ATXN7L1Q9ULK2 861 aaPredicted RBP8.86□□□□□ -0.99
LRRC28-220ENST00000561253 KCNMB2Q9Y691 235 aa8.86□□□□□ -0.99
LRRC28-220ENST00000561253 SETD5Q9C0A6 1442 aa8.86□□□□□ -0.99
LRRC28-220ENST00000561253 ZMYM3Q14202 1370 aa8.86□□□□□ -0.99
LRRC28-220ENST00000561253 XYLBO75191 536 aa8.85□□□□□ -0.99
LRRC28-220ENST00000561253 KCNQ4P56696 695 aa8.85□□□□□ -0.99
LRRC28-220ENST00000561253 SFSWAPQ12872 951 aaKnown RBP8.85□□□□□ -0.99
LRRC28-220ENST00000561253 NDFIP2Q9NV92 336 aa8.85□□□□□ -0.99
LRRC28-220ENST00000561253 MARK1Q9P0L2 795 aa8.85□□□□□ -0.99
LRRC28-220ENST00000561253 NXF1Q9UBU9 619 aaKnown RBP8.85□□□□□ -0.99
LRRC28-220ENST00000561253 FER1L4A9Z1Z3 1794 aa8.85□□□□□ -0.99
LRRC28-220ENST00000561253 NPATQ14207 1427 aa8.85□□□□□ -0.99
LRRC28-220ENST00000561253 RAB3GAP2Q9H2M9 1393 aa8.85□□□□□ -0.99
LRRC28-220ENST00000561253 MROH2AA6NES4 1674 aa8.85□□□□□ -0.99
LRRC28-220ENST00000561253 RIMS1Q86UR5 1692 aaKnown RBP8.85□□□□□ -0.99
LRRC28-220ENST00000561253 PZPP20742 1482 aa8.84□□□□□ -0.99
LRRC28-220ENST00000561253 A6NHS1 94 aa8.84□□□□□ -0.99
LRRC28-220ENST00000561253 GRNP28799 593 aaKnown RBP8.84□□□□□ -0.99
LRRC28-220ENST00000561253 PLCB3Q01970 1234 aa8.84□□□□□ -0.99
LRRC28-220ENST00000561253 ZNF787Q6DD87 383 aa8.84□□□□□ -0.99
LRRC28-220ENST00000561253 ZNF438Q7Z4V0 828 aa8.84□□□□□ -0.99
LRRC28-220ENST00000561253 NPAS4Q8IUM7 802 aa8.84□□□□□ -0.99
LRRC28-220ENST00000561253 CFHR5Q9BXR6 569 aa8.84□□□□□ -0.99
LRRC28-220ENST00000561253 C11orf16Q9NQ32 467 aa8.84□□□□□ -0.99
LRRC28-220ENST00000561253 IQGAP3Q86VI3 1631 aa8.83□□□□□ -1
LRRC28-220ENST00000561253 WASHC2CQ9Y4E1 1318 aa8.83□□□□□ -1
LRRC28-220ENST00000561253 GPR25O00155 361 aa8.83□□□□□ -1
LRRC28-220ENST00000561253 GPR182O15218 404 aa8.83□□□□□ -1
LRRC28-220ENST00000561253 TREHO43280 583 aa8.83□□□□□ -1
LRRC28-220ENST00000561253 CEBPAP49715 358 aaPredicted RBP8.83□□□□□ -1
LRRC28-220ENST00000561253 TRIP4Q15650 581 aaPredicted RBP8.83□□□□□ -1
LRRC28-220ENST00000561253 PDE12Q6L8Q7 609 aaKnown RBP8.83□□□□□ -1
LRRC28-220ENST00000561253 NANOS1Q8WY41 292 aaKnown RBP8.83□□□□□ -1
LRRC28-220ENST00000561253 ALKBH8Q96BT7 664 aaKnown RBP8.83□□□□□ -1
LRRC28-220ENST00000561253 NIF3L1Q9GZT8 377 aa8.83□□□□□ -1
LRRC28-220ENST00000561253 CLTCQ00610 1675 aaKnown RBP8.83□□□□□ -1
LRRC28-220ENST00000561253 ZC3H13Q5T200 1668 aaKnown RBP8.83□□□□□ -1
LRRC28-220ENST00000561253 EFCAB6Q5THR3 1501 aa8.83□□□□□ -1
LRRC28-220ENST00000561253 NUP155O75694 1391 aa8.83□□□□□ -1
LRRC28-220ENST00000561253 C3P01024 1663 aa8.82□□□□□ -1
LRRC28-220ENST00000561253 NOS1P29475 1434 aa8.82□□□□□ -1
LRRC28-220ENST00000561253 NEFLP07196 543 aa8.82□□□□□ -1
LRRC28-220ENST00000561253 CD33P20138 364 aa8.82□□□□□ -1
LRRC28-220ENST00000561253 FGFR3P22607 806 aa8.82□□□□□ -1
LRRC28-220ENST00000561253 VEGFBP49765 207 aa8.82□□□□□ -1
LRRC28-220ENST00000561253 CCINQ13939 588 aa8.82□□□□□ -1
LRRC28-220ENST00000561253 PNMA5Q96PV4 448 aa8.82□□□□□ -1
LRRC28-220ENST00000561253 STRN4Q9NRL3 753 aa8.82□□□□□ -1
LRRC28-220ENST00000561253 AMOTL2Q9Y2J4 779 aa8.82□□□□□ -1
LRRC28-220ENST00000561253 SPATA31D1Q6ZQQ2 1576 aa8.82□□□□□ -1
LRRC28-220ENST00000561253 CEP152O94986 1710 aa8.81□□□□□ -1
LRRC28-220ENST00000561253 EGFRP00533 1210 aa8.81□□□□□ -1
LRRC28-220ENST00000561253 IGHA2P01877 340 aa8.81□□□□□ -1
LRRC28-220ENST00000561253 MAPK8P45983 427 aa8.81□□□□□ -1
LRRC28-220ENST00000561253 COL19A1Q14993 1142 aa8.81□□□□□ -1
LRRC28-220ENST00000561253 NPAS3Q8IXF0 933 aa8.81□□□□□ -1
LRRC28-220ENST00000561253 BCL2L13Q9BXK5 485 aa8.81□□□□□ -1
LRRC28-220ENST00000561253 ERVK-7P63135 1459 aa8.81□□□□□ -1
LRRC28-220ENST00000561253 PLA2R1Q13018 1463 aa8.81□□□□□ -1
LRRC28-220ENST00000561253 PTPRTO14522 1441 aa8.8□□□□□ -1
LRRC28-220ENST00000561253 CAMSAP1Q5T5Y3 1602 aa8.8□□□□□ -1
LRRC28-220ENST00000561253 SPEM2Q0P670 501 aa8.8□□□□□ -1
LRRC28-220ENST00000561253 DSC3Q14574 896 aa8.8□□□□□ -1
LRRC28-220ENST00000561253 EAPPQ56P03 285 aaPredicted RBP8.8□□□□□ -1
LRRC28-220ENST00000561253 XKR5Q6UX68 686 aa8.8□□□□□ -1
LRRC28-220ENST00000561253 KRT25Q7Z3Z0 450 aa8.8□□□□□ -1
LRRC28-220ENST00000561253 NLRP13Q86W25 1043 aa8.8□□□□□ -1
LRRC28-220ENST00000561253 GSX2Q9BZM3 304 aa8.8□□□□□ -1
LRRC28-220ENST00000561253 ELP3Q9H9T3 547 aa8.8□□□□□ -1
LRRC28-220ENST00000561253 KANK1Q14678 1352 aa8.8□□□□□ -1
LRRC28-220ENST00000561253 RPRD2Q5VT52 1461 aaKnown RBP8.8□□□□□ -1
LRRC28-220ENST00000561253 TET3O43151 1660 aa8.8□□□□□ -1
LRRC28-220ENST00000561253 SASH3O75995 380 aa8.79□□□□□ -1
LRRC28-220ENST00000561253 P4HBP07237 508 aaKnown RBP8.79□□□□□ -1
LRRC28-220ENST00000561253 FMR1Q06787 632 aaKnown RBP eCLIP8.79□□□□□ -1
LRRC28-220ENST00000561253 NEUROD1Q13562 356 aa8.79□□□□□ -1
LRRC28-220ENST00000561253 TTC39BQ5VTQ0 682 aaPredicted RBP8.79□□□□□ -1
LRRC28-220ENST00000561253 SYNMO15061 1565 aa8.78□□□□□ -1
LRRC28-220ENST00000561253 LMTK3Q96Q04 1460 aa8.78□□□□□ -1
LRRC28-220ENST00000561253 H3BM21 787 aa8.78□□□□□ -1
LRRC28-220ENST00000561253 TNFRSF21O75509 655 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms