RNA–Protein interactions for RNA: ENST00000561065.1

LMX1B-204, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMX1B, Length 1,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-204ENST00000561065 WDR33Q9C0J8 1336 aaKnown RBP20.24■□□□□ 0.83
LMX1B-204ENST00000561065 ADM5C9JUS6 153 aa20.24■□□□□ 0.83
LMX1B-204ENST00000561065 FOXN1O15353 648 aa20.24■□□□□ 0.83
LMX1B-204ENST00000561065 CDC37L1Q7L3B6 337 aa20.24■□□□□ 0.83
LMX1B-204ENST00000561065 AGBL3Q8NEM8 1001 aa20.24■□□□□ 0.83
LMX1B-204ENST00000561065 SUCLG2Q96I99 432 aa20.24■□□□□ 0.83
LMX1B-204ENST00000561065 LEMD3Q9Y2U8 911 aa20.24■□□□□ 0.83
LMX1B-204ENST00000561065 CHMP3Q9Y3E7 222 aa20.24■□□□□ 0.83
LMX1B-204ENST00000561065 USP17L3A6NCW0 530 aa20.23■□□□□ 0.83
LMX1B-204ENST00000561065 USP17L4A6NCW7 530 aa20.23■□□□□ 0.83
LMX1B-204ENST00000561065 DACT2Q5SW24 774 aa20.23■□□□□ 0.83
LMX1B-204ENST00000561065 CYP4F22Q6NT55 531 aa20.23■□□□□ 0.83
LMX1B-204ENST00000561065 USP17L1Q7RTZ2 530 aa20.23■□□□□ 0.83
LMX1B-204ENST00000561065 SAPCD2Q86UD0 394 aa20.23■□□□□ 0.83
LMX1B-204ENST00000561065 USP48Q86UV5 1035 aa20.23■□□□□ 0.83
LMX1B-204ENST00000561065 TRMT2AQ8IZ69 625 aaKnown RBP20.23■□□□□ 0.83
LMX1B-204ENST00000561065 ZNF594Q96JF6 807 aaPredicted RBP20.23■□□□□ 0.83
LMX1B-204ENST00000561065 ZNF408Q9H9D4 720 aa20.23■□□□□ 0.83
LMX1B-204ENST00000561065 GGA3Q9NZ52 723 aa20.23■□□□□ 0.83
LMX1B-204ENST00000561065 NBPF7P0C2Y1 421 aaPredicted RBP20.22■□□□□ 0.83
LMX1B-204ENST00000561065 IFIT5Q13325 482 aaKnown RBP20.22■□□□□ 0.83
LMX1B-204ENST00000561065 HELBQ8NG08 1087 aaPredicted RBP20.22■□□□□ 0.83
LMX1B-204ENST00000561065 CAPNS2Q96L46 248 aa20.22■□□□□ 0.83
LMX1B-204ENST00000561065 ANKRD2Q9GZV1 360 aa20.22■□□□□ 0.83
LMX1B-204ENST00000561065 C9orf78Q9NZ63 289 aaPredicted RBP20.22■□□□□ 0.83
LMX1B-204ENST00000561065 UTYO14607 1347 aa20.21■□□□□ 0.83
LMX1B-204ENST00000561065 TAF5LO75529 589 aa20.21■□□□□ 0.83
LMX1B-204ENST00000561065 KRT26Q7Z3Y9 468 aa20.21■□□□□ 0.83
LMX1B-204ENST00000561065 COA1Q9GZY4 146 aa20.21■□□□□ 0.83
LMX1B-204ENST00000561065 PTPRCP08575 1304 aa20.2■□□□□ 0.82
LMX1B-204ENST00000561065 WBP1LQ9NX94 342 aa20.2■□□□□ 0.82
LMX1B-204ENST00000561065 ARAP2Q8WZ64 1704 aa20.19■□□□□ 0.82
LMX1B-204ENST00000561065 USP17L8P0C7I0 530 aa20.19■□□□□ 0.82
LMX1B-204ENST00000561065 PAXIP1Q6ZW49 1069 aaPredicted RBP20.19■□□□□ 0.82
LMX1B-204ENST00000561065 MYOZ2Q9NPC6 264 aa20.19■□□□□ 0.82
LMX1B-204ENST00000561065 GRM1Q13255 1194 aa20.18■□□□□ 0.82
LMX1B-204ENST00000561065 STRIP1Q5VSL9 837 aa20.18■□□□□ 0.82
LMX1B-204ENST00000561065 FBXW7Q969H0 707 aa20.18■□□□□ 0.82
LMX1B-204ENST00000561065 BICC1Q9H694 974 aaKnown RBP20.18■□□□□ 0.82
LMX1B-204ENST00000561065 ECM29Q5VYK3 1845 aa20.17■□□□□ 0.82
LMX1B-204ENST00000561065 AOC2O75106 756 aa20.17■□□□□ 0.82
LMX1B-204ENST00000561065 KCNJ4P48050 445 aa20.17■□□□□ 0.82
LMX1B-204ENST00000561065 SCARF1Q14162 830 aa20.17■□□□□ 0.82
LMX1B-204ENST00000561065 CCDC57Q2TAC2 916 aa20.17■□□□□ 0.82
LMX1B-204ENST00000561065 ANGEL2Q5VTE6 544 aaKnown RBP20.17■□□□□ 0.82
LMX1B-204ENST00000561065 C15orf52Q6ZUT6 534 aaKnown RBP20.17■□□□□ 0.82
LMX1B-204ENST00000561065 ANKRD44Q8N8A2 993 aa20.17■□□□□ 0.82
LMX1B-204ENST00000561065 DCPSQ96C86 337 aaKnown RBP20.17■□□□□ 0.82
LMX1B-204ENST00000561065 ALDH1L2Q3SY69 923 aa20.16■□□□□ 0.82
LMX1B-204ENST00000561065 RABL6Q3YEC7 729 aaPredicted RBP20.16■□□□□ 0.82
LMX1B-204ENST00000561065 PUS3Q9BZE2 481 aaKnown RBP20.16■□□□□ 0.82
LMX1B-204ENST00000561065 CD209Q9NNX6 404 aa20.16■□□□□ 0.82
LMX1B-204ENST00000561065 SCAF8Q9UPN6 1271 aaKnown RBP20.16■□□□□ 0.82
LMX1B-204ENST00000561065 ECE1P42892 770 aa20.15■□□□□ 0.82
LMX1B-204ENST00000561065 LDHAL6AQ6ZMR3 332 aa20.15■□□□□ 0.82
LMX1B-204ENST00000561065 HHIPL1Q96JK4 782 aa20.15■□□□□ 0.82
LMX1B-204ENST00000561065 SMC4Q9NTJ3 1288 aa20.15■□□□□ 0.82
LMX1B-204ENST00000561065 MYO3BQ8WXR4 1341 aa20.15■□□□□ 0.82
LMX1B-204ENST00000561065 PAPPA2Q9BXP8 1791 aa20.15■□□□□ 0.82
LMX1B-204ENST00000561065 GTF2IP78347 998 aa20.14■□□□□ 0.81
LMX1B-204ENST00000561065 NBPF9Q3BBW0 867 aa20.14■□□□□ 0.81
LMX1B-204ENST00000561065 TAF7LQ5H9L4 462 aa20.14■□□□□ 0.81
LMX1B-204ENST00000561065 SULF1Q8IWU6 871 aa20.14■□□□□ 0.81
LMX1B-204ENST00000561065 CERS5Q8N5B7 392 aa20.14■□□□□ 0.81
LMX1B-204ENST00000561065 CDCA5Q96FF9 252 aa20.14■□□□□ 0.81
LMX1B-204ENST00000561065 CNNM1Q9NRU3 951 aa20.14■□□□□ 0.81
LMX1B-204ENST00000561065 HSPA8P11142 646 aaKnown RBP20.13■□□□□ 0.81
LMX1B-204ENST00000561065 TTLL5Q6EMB2 1281 aa20.13■□□□□ 0.81
LMX1B-204ENST00000561065 TNS4Q8IZW8 715 aa20.13■□□□□ 0.81
LMX1B-204ENST00000561065 AIDAQ96BJ3 306 aa20.13■□□□□ 0.81
LMX1B-204ENST00000561065 USP44Q9H0E7 712 aa20.13■□□□□ 0.81
LMX1B-204ENST00000561065 GBA2Q9HCG7 927 aaPredicted RBP20.13■□□□□ 0.81
LMX1B-204ENST00000561065 PITPNM2Q9BZ72 1349 aa20.13■□□□□ 0.81
LMX1B-204ENST00000561065 WNT10BO00744 389 aa20.12■□□□□ 0.81
LMX1B-204ENST00000561065 PLIN1O60240 522 aa20.12■□□□□ 0.81
LMX1B-204ENST00000561065 SASH1O94885 1247 aa20.12■□□□□ 0.81
LMX1B-204ENST00000561065 CTCFP49711 727 aaPredicted RBP20.12■□□□□ 0.81
LMX1B-204ENST00000561065 HUNKP57058 714 aa20.12■□□□□ 0.81
LMX1B-204ENST00000561065 MAP2K1Q02750 393 aaPredicted RBP20.12■□□□□ 0.81
LMX1B-204ENST00000561065 KIAA0825Q8IV33 1275 aa20.12■□□□□ 0.81
LMX1B-204ENST00000561065 ZIC5Q96T25 663 aa20.12■□□□□ 0.81
LMX1B-204ENST00000561065 IL1R1P14778 569 aa20.11■□□□□ 0.81
LMX1B-204ENST00000561065 MIER1Q8N108 512 aa20.11■□□□□ 0.81
LMX1B-204ENST00000561065 CT47B1P0C2W7 299 aaPredicted RBP20.1■□□□□ 0.81
LMX1B-204ENST00000561065 LBX1P52954 281 aa20.1■□□□□ 0.81
LMX1B-204ENST00000561065 ZBED3Q96IU2 234 aaPredicted RBP20.1■□□□□ 0.81
LMX1B-204ENST00000561065 PRDM10Q9NQV6 1147 aa20.1■□□□□ 0.81
LMX1B-204ENST00000561065 JAG2Q9Y219 1238 aa20.1■□□□□ 0.81
LMX1B-204ENST00000561065 RIPOR2Q9Y4F9 1068 aa20.1■□□□□ 0.81
LMX1B-204ENST00000561065 FAM155AB1AL88 458 aaPredicted RBP20.09■□□□□ 0.81
LMX1B-204ENST00000561065 LRRC24Q50LG9 513 aa20.09■□□□□ 0.81
LMX1B-204ENST00000561065 ZNF804AQ7Z570 1209 aa20.09■□□□□ 0.81
LMX1B-204ENST00000561065 KLHDC4Q8TBB5 520 aa20.09■□□□□ 0.81
LMX1B-204ENST00000561065 PCDHAC2Q9Y5I4 1007 aa20.09■□□□□ 0.81
LMX1B-204ENST00000561065 MAP2K2P36507 400 aa20.08■□□□□ 0.81
LMX1B-204ENST00000561065 OGFOD1Q8N543 542 aa20.08■□□□□ 0.81
LMX1B-204ENST00000561065 VGLL2Q8N8G2 317 aa20.08■□□□□ 0.81
LMX1B-204ENST00000561065 NOB1Q9ULX3 412 aaKnown RBP20.08■□□□□ 0.81
LMX1B-204ENST00000561065 GYG1P46976 350 aa20.07■□□□□ 0.8
LMX1B-204ENST00000561065 BRPF1P55201 1214 aaPredicted RBP20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms