RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 TRIM35Q9UPQ4 493 aa23.04■■□□□ 1.28
TSPAN3-208ENST00000560514 MED23Q9ULK4 1368 aa23.03■■□□□ 1.28
TSPAN3-208ENST00000560514 MMP14P50281 582 aa23.03■■□□□ 1.28
TSPAN3-208ENST00000560514 PTPN12Q05209 780 aaKnown RBP23.03■■□□□ 1.28
TSPAN3-208ENST00000560514 APOBEC3FQ8IUX4 373 aaKnown RBP23.03■■□□□ 1.28
TSPAN3-208ENST00000560514 JARID2Q92833 1246 aaPredicted RBP23.03■■□□□ 1.28
TSPAN3-208ENST00000560514 CFHR5Q9BXR6 569 aa23.03■■□□□ 1.28
TSPAN3-208ENST00000560514 WDR43Q15061 677 aaKnown RBP eCLIP23.02■■□□□ 1.28
TSPAN3-208ENST00000560514 PHAXQ9H814 394 aaKnown RBP23.02■■□□□ 1.28
TSPAN3-208ENST00000560514 SASH1O94885 1247 aa23.01■■□□□ 1.27
TSPAN3-208ENST00000560514 DDX58O95786 925 aaKnown RBP23.01■■□□□ 1.27
TSPAN3-208ENST00000560514 DACT2Q5SW24 774 aa23.01■■□□□ 1.27
TSPAN3-208ENST00000560514 STRIP1Q5VSL9 837 aa23.01■■□□□ 1.27
TSPAN3-208ENST00000560514 INTS3Q68E01 1043 aaKnown RBP23.01■■□□□ 1.27
TSPAN3-208ENST00000560514 MXD3Q9BW11 206 aa23.01■■□□□ 1.27
TSPAN3-208ENST00000560514 ANGEL1Q9UNK9 670 aaKnown RBP23.01■■□□□ 1.27
TSPAN3-208ENST00000560514 TRIM17Q9Y577 477 aa23.01■■□□□ 1.27
TSPAN3-208ENST00000560514 COA1Q9GZY4 146 aa23■■□□□ 1.27
TSPAN3-208ENST00000560514 ZBTB4Q9P1Z0 1013 aaPredicted RBP23■■□□□ 1.27
TSPAN3-208ENST00000560514 MANSC4A6NHS7 340 aaPredicted RBP22.99■■□□□ 1.27
TSPAN3-208ENST00000560514 CTSWP56202 376 aa22.99■■□□□ 1.27
TSPAN3-208ENST00000560514 INHBEP58166 350 aa22.99■■□□□ 1.27
TSPAN3-208ENST00000560514 SPRYD7Q5W111 196 aa22.99■■□□□ 1.27
TSPAN3-208ENST00000560514 MBIPQ9NS73 344 aa22.99■■□□□ 1.27
TSPAN3-208ENST00000560514 BSDC1Q9NW68 430 aaPredicted RBP22.99■■□□□ 1.27
TSPAN3-208ENST00000560514 SPEF2Q9C093 1822 aa22.98■■□□□ 1.27
TSPAN3-208ENST00000560514 CCT4P50991 539 aaKnown RBP22.98■■□□□ 1.27
TSPAN3-208ENST00000560514 HABP4Q5JVS0 413 aaKnown RBP22.98■■□□□ 1.27
TSPAN3-208ENST00000560514 TTLL5Q6EMB2 1281 aa22.98■■□□□ 1.27
TSPAN3-208ENST00000560514 SLC10A4Q96EP9 437 aa22.98■■□□□ 1.27
TSPAN3-208ENST00000560514 METTL22Q9BUU2 404 aaPredicted RBP22.98■■□□□ 1.27
TSPAN3-208ENST00000560514 R3HDMLQ9H3Y0 253 aa22.98■■□□□ 1.27
TSPAN3-208ENST00000560514 MINPP1Q9UNW1 487 aa22.98■■□□□ 1.27
TSPAN3-208ENST00000560514 ELL2O00472 640 aaPredicted RBP22.97■■□□□ 1.27
TSPAN3-208ENST00000560514 CHMP4AQ9BY43 222 aa22.97■■□□□ 1.27
TSPAN3-208ENST00000560514 MYH3P11055 1940 aa22.96■■□□□ 1.27
TSPAN3-208ENST00000560514 LDLRAD1Q5T700 205 aa22.96■■□□□ 1.27
TSPAN3-208ENST00000560514 KIAA0825Q8IV33 1275 aa22.96■■□□□ 1.27
TSPAN3-208ENST00000560514 WTIPA6NIX2 430 aaPredicted RBP22.95■■□□□ 1.26
TSPAN3-208ENST00000560514 PPP1R12BO60237 982 aaPredicted RBP22.95■■□□□ 1.26
TSPAN3-208ENST00000560514 IGHMBP2P38935 993 aaKnown RBP22.95■■□□□ 1.26
TSPAN3-208ENST00000560514 IFNL1Q8IU54 200 aa22.95■■□□□ 1.26
TSPAN3-208ENST00000560514 ERO1AQ96HE7 468 aa22.95■■□□□ 1.26
TSPAN3-208ENST00000560514 LEMD3Q9Y2U8 911 aa22.95■■□□□ 1.26
TSPAN3-208ENST00000560514 OTUD7BQ6GQQ9 843 aa22.94■■□□□ 1.26
TSPAN3-208ENST00000560514 OTOP1Q7RTM1 612 aa22.94■■□□□ 1.26
TSPAN3-208ENST00000560514 TTLL11Q8NHH1 800 aa22.94■■□□□ 1.26
TSPAN3-208ENST00000560514 GREM2Q9H772 168 aa22.94■■□□□ 1.26
TSPAN3-208ENST00000560514 COL1A1P02452 1464 aaPredicted RBP22.93■■□□□ 1.26
TSPAN3-208ENST00000560514 MYBBP1AQ9BQG0 1328 aaKnown RBP22.93■■□□□ 1.26
TSPAN3-208ENST00000560514 POTEFA5A3E0 1075 aa22.93■■□□□ 1.26
TSPAN3-208ENST00000560514 ZBTB48P10074 688 aaPredicted RBP22.93■■□□□ 1.26
TSPAN3-208ENST00000560514 CALD1Q05682 793 aaKnown RBP22.93■■□□□ 1.26
TSPAN3-208ENST00000560514 NEXNQ0ZGT2 675 aa22.93■■□□□ 1.26
TSPAN3-208ENST00000560514 DEFB129Q9H1M3 183 aa22.93■■□□□ 1.26
TSPAN3-208ENST00000560514 MAP3K2Q9Y2U5 619 aa22.93■■□□□ 1.26
TSPAN3-208ENST00000560514 ZNF646O15015 1829 aaPredicted RBP22.92■■□□□ 1.26
TSPAN3-208ENST00000560514 KCNJ4P48050 445 aa22.92■■□□□ 1.26
TSPAN3-208ENST00000560514 GNAI1P63096 354 aa22.92■■□□□ 1.26
TSPAN3-208ENST00000560514 DLGAP5Q15398 846 aa22.92■■□□□ 1.26
TSPAN3-208ENST00000560514 CCDC30Q5VVM6 783 aa22.92■■□□□ 1.26
TSPAN3-208ENST00000560514 ZNF804BA4D1E1 1349 aa22.91■■□□□ 1.26
TSPAN3-208ENST00000560514 GTF2IP78347 998 aa22.91■■□□□ 1.26
TSPAN3-208ENST00000560514 WNK4Q96J92 1243 aa22.91■■□□□ 1.26
TSPAN3-208ENST00000560514 ANKRD2Q9GZV1 360 aa22.91■■□□□ 1.26
TSPAN3-208ENST00000560514 IFT57Q9NWB7 429 aa22.91■■□□□ 1.26
TSPAN3-208ENST00000560514 FZD1Q9UP38 647 aa22.91■■□□□ 1.26
TSPAN3-208ENST00000560514 MYO1BO43795 1136 aa22.9■■□□□ 1.26
TSPAN3-208ENST00000560514 TXNRD3Q86VQ6 643 aa22.9■■□□□ 1.26
TSPAN3-208ENST00000560514 MPHOSPH8Q99549 860 aa22.9■■□□□ 1.26
TSPAN3-208ENST00000560514 ADAMTS8Q9UP79 889 aa22.9■■□□□ 1.26
TSPAN3-208ENST00000560514 PTPN22Q9Y2R2 807 aa22.9■■□□□ 1.26
TSPAN3-208ENST00000560514 PPP2R3BQ9Y5P8 575 aa22.9■■□□□ 1.26
TSPAN3-208ENST00000560514 KIAA0100Q14667 2235 aaKnown RBP22.9■■□□□ 1.26
TSPAN3-208ENST00000560514 ZNF853P0CG23 659 aa22.89■■□□□ 1.25
TSPAN3-208ENST00000560514 SUPT20HL1Q3ZLR7 823 aa22.89■■□□□ 1.25
TSPAN3-208ENST00000560514 TMEM106CQ9BVX2 250 aa22.89■■□□□ 1.25
TSPAN3-208ENST00000560514 IGF2BP3O00425 579 aaKnown RBP eCLIP22.88■■□□□ 1.25
TSPAN3-208ENST00000560514 MAP3K11Q16584 847 aa22.88■■□□□ 1.25
TSPAN3-208ENST00000560514 KSR2Q6VAB6 950 aa22.88■■□□□ 1.25
TSPAN3-208ENST00000560514 ZBED3Q96IU2 234 aaPredicted RBP22.88■■□□□ 1.25
TSPAN3-208ENST00000560514 EFCC1Q9HA90 598 aa22.88■■□□□ 1.25
TSPAN3-208ENST00000560514 MKI67P46013 3256 aaKnown RBP22.88■■□□□ 1.25
TSPAN3-208ENST00000560514 RBBP6Q7Z6E9 1792 aaKnown RBP22.88■■□□□ 1.25
TSPAN3-208ENST00000560514 PI4KAP2A4QPH2 592 aa22.87■■□□□ 1.25
TSPAN3-208ENST00000560514 UNCXA6NJT0 531 aa22.87■■□□□ 1.25
TSPAN3-208ENST00000560514 IREB2P48200 963 aaKnown RBP22.87■■□□□ 1.25
TSPAN3-208ENST00000560514 PI4KAP1Q8N8J0 262 aa22.87■■□□□ 1.25
TSPAN3-208ENST00000560514 CD99L2Q8TCZ2 262 aa22.87■■□□□ 1.25
TSPAN3-208ENST00000560514 CLMNQ96JQ2 1002 aa22.87■■□□□ 1.25
TSPAN3-208ENST00000560514 IGKV5-2P06315 115 aa22.86■■□□□ 1.25
TSPAN3-208ENST00000560514 ECM29Q5VYK3 1845 aa22.86■■□□□ 1.25
TSPAN3-208ENST00000560514 EN2P19622 333 aaPredicted RBP22.85■■□□□ 1.25
TSPAN3-208ENST00000560514 SP3Q02447 781 aa22.85■■□□□ 1.25
TSPAN3-208ENST00000560514 CRHR2Q13324 411 aa22.85■■□□□ 1.25
TSPAN3-208ENST00000560514 ARHGEF6Q15052 776 aa22.85■■□□□ 1.25
TSPAN3-208ENST00000560514 UBE3BQ7Z3V4 1068 aa22.85■■□□□ 1.25
TSPAN3-208ENST00000560514 C8orf58Q8NAV2 365 aa22.85■■□□□ 1.25
TSPAN3-208ENST00000560514 STK31Q9BXU1 1019 aa22.85■■□□□ 1.25
TSPAN3-208ENST00000560514 VEZTQ9HBM0 779 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms