RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 SNED1Q8TER0 1413 aa7.86□□□□□ -1.15
SPG11-221ENST00000560299 ABCC12Q96J65 1359 aa7.86□□□□□ -1.15
SPG11-221ENST00000560299 A0A0G2JLW4 131 aa7.86□□□□□ -1.15
SPG11-221ENST00000560299 GLRX3O76003 335 aaKnown RBP7.86□□□□□ -1.15
SPG11-221ENST00000560299 YBX3P16989 372 aaKnown RBP eCLIP7.86□□□□□ -1.15
SPG11-221ENST00000560299 GPR162Q16538 588 aa7.86□□□□□ -1.15
SPG11-221ENST00000560299 LRRC24Q50LG9 513 aa7.86□□□□□ -1.15
SPG11-221ENST00000560299 TNNI3KQ59H18 835 aa7.86□□□□□ -1.15
SPG11-221ENST00000560299 BMP2KLQ5H9B9 411 aa7.86□□□□□ -1.15
SPG11-221ENST00000560299 GORABQ5T7V8 394 aa7.86□□□□□ -1.15
SPG11-221ENST00000560299 ATG9AQ7Z3C6 839 aa7.86□□□□□ -1.15
SPG11-221ENST00000560299 C16orf71Q8IYS4 520 aaPredicted RBP7.86□□□□□ -1.15
SPG11-221ENST00000560299 RTKN2Q8IZC4 609 aa7.86□□□□□ -1.15
SPG11-221ENST00000560299 SLC39A7Q92504 469 aa7.86□□□□□ -1.15
SPG11-221ENST00000560299 NEUROD6Q96NK8 337 aa7.86□□□□□ -1.15
SPG11-221ENST00000560299 PSMD1Q99460 953 aa7.86□□□□□ -1.15
SPG11-221ENST00000560299 ANKRD2Q9GZV1 360 aa7.86□□□□□ -1.15
SPG11-221ENST00000560299 TMX4Q9H1E5 349 aaPredicted RBP7.86□□□□□ -1.15
SPG11-221ENST00000560299 SEC31BQ9NQW1 1179 aa7.86□□□□□ -1.15
SPG11-221ENST00000560299 RIPOR2Q9Y4F9 1068 aa7.86□□□□□ -1.15
SPG11-221ENST00000560299 FPGT-TNNI3KV9GXZ4 949 aa7.86□□□□□ -1.15
SPG11-221ENST00000560299 PDE8BO95263 885 aa7.85□□□□□ -1.15
SPG11-221ENST00000560299 IFIT1P09914 478 aaKnown RBP7.85□□□□□ -1.15
SPG11-221ENST00000560299 C7P10643 843 aa7.85□□□□□ -1.15
SPG11-221ENST00000560299 GRAPQ13588 217 aa7.85□□□□□ -1.15
SPG11-221ENST00000560299 CCDC158Q5M9N0 1113 aa7.85□□□□□ -1.15
SPG11-221ENST00000560299 TTC22Q5TAA0 569 aa7.85□□□□□ -1.15
SPG11-221ENST00000560299 CASC1Q6TDU7 716 aa7.85□□□□□ -1.15
SPG11-221ENST00000560299 SKAP1Q86WV1 359 aa7.85□□□□□ -1.15
SPG11-221ENST00000560299 CCDC24Q8N4L8 307 aa7.85□□□□□ -1.15
SPG11-221ENST00000560299 GRAPLQ8TC17 118 aaPredicted RBP7.85□□□□□ -1.15
SPG11-221ENST00000560299 EAF2Q96CJ1 260 aaPredicted RBP7.85□□□□□ -1.15
SPG11-221ENST00000560299 PUS3Q9BZE2 481 aaKnown RBP7.85□□□□□ -1.15
SPG11-221ENST00000560299 ECHDC1Q9NTX5 307 aa7.85□□□□□ -1.15
SPG11-221ENST00000560299 A0A1B0GUL7 405 aa7.84□□□□□ -1.15
SPG11-221ENST00000560299 TRIM6-TRIM34B2RNG4 842 aa7.84□□□□□ -1.15
SPG11-221ENST00000560299 SLC5A1P13866 664 aa7.84□□□□□ -1.15
SPG11-221ENST00000560299 PUM3Q15397 648 aaKnown RBP7.84□□□□□ -1.15
SPG11-221ENST00000560299 ATP2B3Q16720 1220 aa7.84□□□□□ -1.15
SPG11-221ENST00000560299 PRPF40BQ6NWY9 871 aaKnown RBP7.84□□□□□ -1.15
SPG11-221ENST00000560299 SP8Q8IXZ3 490 aa7.84□□□□□ -1.15
SPG11-221ENST00000560299 LPIN2Q92539 896 aa7.84□□□□□ -1.15
SPG11-221ENST00000560299 RTFDC1Q9BY42 306 aaPredicted RBP7.84□□□□□ -1.15
SPG11-221ENST00000560299 CCDC8Q9H0W5 538 aaPredicted RBP7.84□□□□□ -1.15
SPG11-221ENST00000560299 ATP6V0A2Q9Y487 856 aa7.84□□□□□ -1.15
SPG11-221ENST00000560299 COL11A2P13942 1736 aaPredicted RBP7.83□□□□□ -1.16
SPG11-221ENST00000560299 FER1L6Q2WGJ9 1857 aa7.83□□□□□ -1.16
SPG11-221ENST00000560299 SALL3Q9BXA9 1300 aa7.83□□□□□ -1.16
SPG11-221ENST00000560299 POTEJP0CG39 1038 aa7.83□□□□□ -1.16
SPG11-221ENST00000560299 LMNB1P20700 586 aa7.83□□□□□ -1.16
SPG11-221ENST00000560299 CHRNA5P30532 468 aa7.83□□□□□ -1.16
SPG11-221ENST00000560299 KCNJ4P48050 445 aa7.83□□□□□ -1.16
SPG11-221ENST00000560299 TIMM10P62072 90 aa7.83□□□□□ -1.16
SPG11-221ENST00000560299 CHRNDQ07001 517 aa7.83□□□□□ -1.16
SPG11-221ENST00000560299 UBE4AQ14139 1066 aa7.83□□□□□ -1.16
SPG11-221ENST00000560299 CCDC93Q567U6 631 aa7.83□□□□□ -1.16
SPG11-221ENST00000560299 C3orf67Q6ZVT6 689 aa7.83□□□□□ -1.16
SPG11-221ENST00000560299 CNTROBQ8N137 903 aa7.83□□□□□ -1.16
SPG11-221ENST00000560299 OTUD7AQ8TE49 926 aaPredicted RBP7.83□□□□□ -1.16
SPG11-221ENST00000560299 CELF1Q92879 486 aaKnown RBP7.83□□□□□ -1.16
SPG11-221ENST00000560299 UPF2Q9HAU5 1272 aaKnown RBP7.83□□□□□ -1.16
SPG11-221ENST00000560299 PODXL2Q9NZ53 605 aa7.83□□□□□ -1.16
SPG11-221ENST00000560299 MINPP1Q9UNW1 487 aa7.83□□□□□ -1.16
SPG11-221ENST00000560299 BCS1LQ9Y276 419 aa7.83□□□□□ -1.16
SPG11-221ENST00000560299 LRRC37AA6NMS7 1700 aa7.83□□□□□ -1.16
SPG11-221ENST00000560299 CDC45O75419 566 aa7.82□□□□□ -1.16
SPG11-221ENST00000560299 UQCRFS1P1P0C7P4 283 aa7.82□□□□□ -1.16
SPG11-221ENST00000560299 ATP5JP18859 108 aa7.82□□□□□ -1.16
SPG11-221ENST00000560299 LRRFIP1Q32MZ4 808 aaKnown RBP7.82□□□□□ -1.16
SPG11-221ENST00000560299 CAVIN4Q5BKX8 364 aa7.82□□□□□ -1.16
SPG11-221ENST00000560299 TTC39AQ5SRH9 613 aa7.82□□□□□ -1.16
SPG11-221ENST00000560299 LCE2DQ5TA82 110 aaPredicted RBP7.82□□□□□ -1.16
SPG11-221ENST00000560299 ASTLQ6HA08 431 aaPredicted RBP7.82□□□□□ -1.16
SPG11-221ENST00000560299 VGLL2Q8N8G2 317 aa7.82□□□□□ -1.16
SPG11-221ENST00000560299 SUPT20HQ8NEM7 779 aa7.82□□□□□ -1.16
SPG11-221ENST00000560299 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.82□□□□□ -1.16
SPG11-221ENST00000560299 ZNF622Q969S3 477 aaKnown RBP eCLIP7.82□□□□□ -1.16
SPG11-221ENST00000560299 RILPL2Q969X0 211 aa7.82□□□□□ -1.16
SPG11-221ENST00000560299 EVI5LQ96CN4 794 aa7.82□□□□□ -1.16
SPG11-221ENST00000560299 XAGE2Q96GT9 111 aa7.82□□□□□ -1.16
SPG11-221ENST00000560299 DBNDD2Q9BQY9 259 aa7.82□□□□□ -1.16
SPG11-221ENST00000560299 GNL3LQ9NVN8 582 aaKnown RBP7.82□□□□□ -1.16
SPG11-221ENST00000560299 ANKIB1Q9P2G1 1089 aa7.82□□□□□ -1.16
SPG11-221ENST00000560299 DBNLQ9UJU6 430 aaKnown RBP7.82□□□□□ -1.16
SPG11-221ENST00000560299 LEMD3Q9Y2U8 911 aa7.82□□□□□ -1.16
SPG11-221ENST00000560299 TNRC6CQ9HCJ0 1690 aaKnown RBP7.82□□□□□ -1.16
SPG11-221ENST00000560299 ZNF609O15014 1411 aa7.81□□□□□ -1.16
SPG11-221ENST00000560299 SLX4Q8IY92 1834 aa7.81□□□□□ -1.16
SPG11-221ENST00000560299 NFKBIEO00221 500 aa7.81□□□□□ -1.16
SPG11-221ENST00000560299 HIP1O00291 1037 aa7.81□□□□□ -1.16
SPG11-221ENST00000560299 ATMINO43313 823 aaPredicted RBP7.81□□□□□ -1.16
SPG11-221ENST00000560299 TAF5LO75529 589 aa7.81□□□□□ -1.16
SPG11-221ENST00000560299 SDSP20132 328 aa7.81□□□□□ -1.16
SPG11-221ENST00000560299 FGFR2P21802 821 aa7.81□□□□□ -1.16
SPG11-221ENST00000560299 MMP14P50281 582 aa7.81□□□□□ -1.16
SPG11-221ENST00000560299 FKBP4Q02790 459 aaKnown RBP eCLIP7.81□□□□□ -1.16
SPG11-221ENST00000560299 TICAM2Q86XR7 235 aa7.81□□□□□ -1.16
SPG11-221ENST00000560299 VPS37DQ86XT2 251 aa7.81□□□□□ -1.16
SPG11-221ENST00000560299 KLHL34Q8N239 644 aa7.81□□□□□ -1.16
SPG11-221ENST00000560299 HELBQ8NG08 1087 aaPredicted RBP7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms