RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 YDJCA8MPS7 323 aa26.94■■□□□ 1.9
SNX1-210ENST00000560260 ATP2B3Q16720 1220 aa26.94■■□□□ 1.9
SNX1-210ENST00000560260 NIM1KQ8IY84 436 aa26.94■■□□□ 1.9
SNX1-210ENST00000560260 ZNF646O15015 1829 aaPredicted RBP26.94■■□□□ 1.9
SNX1-210ENST00000560260 ZNF541Q9H0D2 1346 aa26.94■■□□□ 1.9
SNX1-210ENST00000560260 FZD9O00144 591 aa26.92■■□□□ 1.9
SNX1-210ENST00000560260 ECE2O60344 883 aa26.92■■□□□ 1.9
SNX1-210ENST00000560260 LPIN2Q92539 896 aa26.92■■□□□ 1.9
SNX1-210ENST00000560260 DCTPP1Q9H773 170 aa26.92■■□□□ 1.9
SNX1-210ENST00000560260 APBB1O00213 710 aa26.91■■□□□ 1.9
SNX1-210ENST00000560260 ADORA1P30542 326 aa26.91■■□□□ 1.9
SNX1-210ENST00000560260 GYG1P46976 350 aa26.91■■□□□ 1.9
SNX1-210ENST00000560260 HDAC1Q13547 482 aaPredicted RBP26.91■■□□□ 1.9
SNX1-210ENST00000560260 JDP2Q8WYK2 163 aa26.91■■□□□ 1.9
SNX1-210ENST00000560260 ZC3H4Q9UPT8 1303 aaKnown RBP26.91■■□□□ 1.9
SNX1-210ENST00000560260 A0A1B0GUL7 405 aa26.9■■□□□ 1.9
SNX1-210ENST00000560260 SLC5A1P13866 664 aa26.9■■□□□ 1.9
SNX1-210ENST00000560260 HSP90AB4PQ58FF6 505 aa26.9■■□□□ 1.9
SNX1-210ENST00000560260 RHPN1Q8TCX5 695 aa26.9■■□□□ 1.9
SNX1-210ENST00000560260 FAM84BQ96KN1 310 aaPredicted RBP26.9■■□□□ 1.9
SNX1-210ENST00000560260 KCNQ5Q9NR82 932 aa26.9■■□□□ 1.9
SNX1-210ENST00000560260 PSME4Q14997 1843 aa26.9■■□□□ 1.9
SNX1-210ENST00000560260 TIMM10P62072 90 aa26.9■■□□□ 1.9
SNX1-210ENST00000560260 TNNI3KQ59H18 835 aa26.9■■□□□ 1.9
SNX1-210ENST00000560260 ZNRF3Q9ULT6 936 aa26.9■■□□□ 1.9
SNX1-210ENST00000560260 FPGT-TNNI3KV9GXZ4 949 aa26.9■■□□□ 1.9
SNX1-210ENST00000560260 IGHDP01880 384 aa26.89■■□□□ 1.89
SNX1-210ENST00000560260 IFIT1P09914 478 aaKnown RBP26.89■■□□□ 1.89
SNX1-210ENST00000560260 ERC1Q8IUD2 1116 aa26.89■■□□□ 1.89
SNX1-210ENST00000560260 COA1Q9GZY4 146 aa26.89■■□□□ 1.89
SNX1-210ENST00000560260 IL1RAPL2Q9NP60 686 aa26.89■■□□□ 1.89
SNX1-210ENST00000560260 GPR108Q9NPR9 543 aa26.89■■□□□ 1.89
SNX1-210ENST00000560260 RAB11FIP3O75154 756 aa26.88■■□□□ 1.89
SNX1-210ENST00000560260 FBXO33Q7Z6M2 555 aa26.88■■□□□ 1.89
SNX1-210ENST00000560260 KIF1BPQ96EK5 621 aa26.88■■□□□ 1.89
SNX1-210ENST00000560260 CD209Q9NNX6 404 aa26.88■■□□□ 1.89
SNX1-210ENST00000560260 AKAP2Q9Y2D5 859 aa26.88■■□□□ 1.89
SNX1-210ENST00000560260 BCAMP50895 628 aa26.87■■□□□ 1.89
SNX1-210ENST00000560260 ZNF804AQ7Z570 1209 aa26.87■■□□□ 1.89
SNX1-210ENST00000560260 EAF2Q96CJ1 260 aaPredicted RBP26.87■■□□□ 1.89
SNX1-210ENST00000560260 XAGE2Q96GT9 111 aa26.87■■□□□ 1.89
SNX1-210ENST00000560260 TLR7Q9NYK1 1049 aaKnown RBP26.87■■□□□ 1.89
SNX1-210ENST00000560260 SMARCA5O60264 1052 aaPredicted RBP26.86■■□□□ 1.89
SNX1-210ENST00000560260 RAD17O75943 681 aa26.86■■□□□ 1.89
SNX1-210ENST00000560260 HIBADHP31937 336 aaKnown RBP26.86■■□□□ 1.89
SNX1-210ENST00000560260 CXCL9Q07325 125 aa26.86■■□□□ 1.89
SNX1-210ENST00000560260 COL1A1P02452 1464 aaPredicted RBP26.85■■□□□ 1.89
SNX1-210ENST00000560260 IL1R1P14778 569 aa26.85■■□□□ 1.89
SNX1-210ENST00000560260 DBNDD2Q9BQY9 259 aa26.85■■□□□ 1.89
SNX1-210ENST00000560260 G3V3G9 751 aa26.84■■□□□ 1.89
SNX1-210ENST00000560260 PHKA1P46020 1223 aa26.84■■□□□ 1.89
SNX1-210ENST00000560260 EIF6P56537 245 aaKnown RBP26.84■■□□□ 1.89
SNX1-210ENST00000560260 DCAF8Q5TAQ9 597 aa26.84■■□□□ 1.89
SNX1-210ENST00000560260 PODNQ7Z5L7 613 aa26.84■■□□□ 1.89
SNX1-210ENST00000560260 NEUROD6Q96NK8 337 aa26.84■■□□□ 1.89
SNX1-210ENST00000560260 DBNLQ9UJU6 430 aaKnown RBP26.84■■□□□ 1.89
SNX1-210ENST00000560260 NEFLP07196 543 aa26.83■■□□□ 1.89
SNX1-210ENST00000560260 TDRD7Q8NHU6 1098 aaKnown RBP26.83■■□□□ 1.89
SNX1-210ENST00000560260 CCDC8Q9H0W5 538 aaPredicted RBP26.83■■□□□ 1.89
SNX1-210ENST00000560260 IQSEC3Q9UPP2 1182 aaPredicted RBP26.83■■□□□ 1.89
SNX1-210ENST00000560260 PSMD14O00487 310 aa26.82■■□□□ 1.88
SNX1-210ENST00000560260 DDNO94850 711 aaPredicted RBP26.82■■□□□ 1.88
SNX1-210ENST00000560260 CAVIN4Q5BKX8 364 aa26.82■■□□□ 1.88
SNX1-210ENST00000560260 CIAPIN1Q6FI81 312 aa26.82■■□□□ 1.88
SNX1-210ENST00000560260 AACSQ86V21 672 aa26.82■■□□□ 1.88
SNX1-210ENST00000560260 LRRCC1Q9C099 1032 aa26.82■■□□□ 1.88
SNX1-210ENST00000560260 RWDD1Q9H446 243 aaPredicted RBP26.82■■□□□ 1.88
SNX1-210ENST00000560260 GLTPD2A6NH11 291 aa26.81■■□□□ 1.88
SNX1-210ENST00000560260 YY1P25490 414 aa26.81■■□□□ 1.88
SNX1-210ENST00000560260 CCDC102BQ68D86 513 aa26.81■■□□□ 1.88
SNX1-210ENST00000560260 MYH13Q9UKX3 1938 aa26.8■■□□□ 1.88
SNX1-210ENST00000560260 SMC5Q8IY18 1101 aa26.8■■□□□ 1.88
SNX1-210ENST00000560260 JAG2Q9Y219 1238 aa26.8■■□□□ 1.88
SNX1-210ENST00000560260 GJA3Q9Y6H8 435 aa26.8■■□□□ 1.88
SNX1-210ENST00000560260 WDR90Q96KV7 1748 aa26.79■■□□□ 1.88
SNX1-210ENST00000560260 VPS37DQ86XT2 251 aa26.79■■□□□ 1.88
SNX1-210ENST00000560260 CLASRPQ8N2M8 674 aaKnown RBP26.79■■□□□ 1.88
SNX1-210ENST00000560260 GCC1Q96CN9 775 aa26.79■■□□□ 1.88
SNX1-210ENST00000560260 MXD3Q9BW11 206 aa26.79■■□□□ 1.88
SNX1-210ENST00000560260 BCL11AQ9H165 835 aa26.79■■□□□ 1.88
SNX1-210ENST00000560260 GTF2IP78347 998 aa26.78■■□□□ 1.88
SNX1-210ENST00000560260 DACT2Q5SW24 774 aa26.78■■□□□ 1.88
SNX1-210ENST00000560260 GPC2Q8N158 579 aa26.78■■□□□ 1.88
SNX1-210ENST00000560260 ZBTB12Q9Y330 459 aaPredicted RBP26.78■■□□□ 1.88
SNX1-210ENST00000560260 USP17L3A6NCW0 530 aa26.77■■□□□ 1.88
SNX1-210ENST00000560260 USP17L4A6NCW7 530 aa26.77■■□□□ 1.88
SNX1-210ENST00000560260 VIL1P09327 827 aaKnown RBP26.77■■□□□ 1.88
SNX1-210ENST00000560260 USP17L1Q7RTZ2 530 aa26.77■■□□□ 1.88
SNX1-210ENST00000560260 ZNF526Q8TF50 670 aaPredicted RBP26.77■■□□□ 1.88
SNX1-210ENST00000560260 FBXW7Q969H0 707 aa26.76■■□□□ 1.87
SNX1-210ENST00000560260 FAM205AQ6ZU69 1335 aa26.76■■□□□ 1.87
SNX1-210ENST00000560260 GMPSP49915 693 aaPredicted RBP26.75■■□□□ 1.87
SNX1-210ENST00000560260 SCARF1Q14162 830 aa26.75■■□□□ 1.87
SNX1-210ENST00000560260 TNIP1Q15025 636 aa26.75■■□□□ 1.87
SNX1-210ENST00000560260 STRIP1Q5VSL9 837 aa26.75■■□□□ 1.87
SNX1-210ENST00000560260 TTLL5Q6EMB2 1281 aa26.75■■□□□ 1.87
SNX1-210ENST00000560260 DPY19L2Q6NUT2 758 aa26.75■■□□□ 1.87
SNX1-210ENST00000560260 CERS5Q8N5B7 392 aa26.75■■□□□ 1.87
SNX1-210ENST00000560260 ARID4AP29374 1257 aaPredicted RBP26.74■■□□□ 1.87
SNX1-210ENST00000560260 SCNN1DP51172 638 aa26.74■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms