RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 HDGFL1Q5TGJ6 251 aa6.7□□□□□ -1.34
SPG11-220ENST00000559933 G2E3Q7L622 706 aa6.7□□□□□ -1.34
SPG11-220ENST00000559933 ZNF511Q8NB15 262 aa6.7□□□□□ -1.34
SPG11-220ENST00000559933 FRAT1Q92837 279 aaPredicted RBP6.7□□□□□ -1.34
SPG11-220ENST00000559933 ZNF428Q96B54 188 aa6.7□□□□□ -1.34
SPG11-220ENST00000559933 CHPF2Q9P2E5 772 aa6.7□□□□□ -1.34
SPG11-220ENST00000559933 COL5A3P25940 1745 aaPredicted RBP6.7□□□□□ -1.34
SPG11-220ENST00000559933 LILRB3O75022 631 aa6.69□□□□□ -1.34
SPG11-220ENST00000559933 A1BGP04217 495 aa6.69□□□□□ -1.34
SPG11-220ENST00000559933 MYL6BP14649 208 aa6.69□□□□□ -1.34
SPG11-220ENST00000559933 AGERQ15109 404 aa6.69□□□□□ -1.34
SPG11-220ENST00000559933 QPCTQ16769 361 aa6.69□□□□□ -1.34
SPG11-220ENST00000559933 FAM196AQ6ZSG2 479 aa6.69□□□□□ -1.34
SPG11-220ENST00000559933 ARMC2Q8NEN0 867 aa6.69□□□□□ -1.34
SPG11-220ENST00000559933 CLUAP1Q96AJ1 413 aa6.69□□□□□ -1.34
SPG11-220ENST00000559933 FMNL2Q96PY5 1086 aa6.69□□□□□ -1.34
SPG11-220ENST00000559933 PHAXQ9H814 394 aaKnown RBP6.69□□□□□ -1.34
SPG11-220ENST00000559933 GPBP1L1Q9HC44 474 aaPredicted RBP6.69□□□□□ -1.34
SPG11-220ENST00000559933 BABAM1Q9NWV8 329 aa6.69□□□□□ -1.34
SPG11-220ENST00000559933 LOC102724428A0A0B4J2F2 783 aa6.68□□□□□ -1.34
SPG11-220ENST00000559933 SNRPA1P09661 255 aaKnown RBP6.68□□□□□ -1.34
SPG11-220ENST00000559933 RLBP1P12271 317 aa6.68□□□□□ -1.34
SPG11-220ENST00000559933 VARSP26640 1264 aaKnown RBP6.68□□□□□ -1.34
SPG11-220ENST00000559933 SMCPP49901 116 aaPredicted RBP6.68□□□□□ -1.34
SPG11-220ENST00000559933 SIK1P57059 783 aa6.68□□□□□ -1.34
SPG11-220ENST00000559933 NBPF14Q5TI25 921 aa6.68□□□□□ -1.34
SPG11-220ENST00000559933 NBPF10Q6P3W6 841 aaKnown RBP6.68□□□□□ -1.34
SPG11-220ENST00000559933 AMIGO3Q86WK7 504 aa6.68□□□□□ -1.34
SPG11-220ENST00000559933 NBPF15Q8N660 670 aa6.68□□□□□ -1.34
SPG11-220ENST00000559933 LINC00116Q8NCU8 138 aa6.68□□□□□ -1.34
SPG11-220ENST00000559933 MAP10Q9P2G4 905 aa6.68□□□□□ -1.34
SPG11-220ENST00000559933 NOB1Q9ULX3 412 aaKnown RBP6.68□□□□□ -1.34
SPG11-220ENST00000559933 ZNF330Q9Y3S2 320 aaPredicted RBP6.68□□□□□ -1.34
SPG11-220ENST00000559933 TAF1LQ8IZX4 1826 aa6.68□□□□□ -1.34
SPG11-220ENST00000559933 CICQ96RK0 1608 aaPredicted RBP6.68□□□□□ -1.34
SPG11-220ENST00000559933 RREB1Q92766 1687 aa6.68□□□□□ -1.34
SPG11-220ENST00000559933 MYH14Q7Z406 1995 aaKnown RBP6.68□□□□□ -1.34
SPG11-220ENST00000559933 F6X3S4 739 aa6.67□□□□□ -1.34
SPG11-220ENST00000559933 CANXP27824 592 aaKnown RBP6.67□□□□□ -1.34
SPG11-220ENST00000559933 AIMP1Q12904 312 aaKnown RBP6.67□□□□□ -1.34
SPG11-220ENST00000559933 SKIV2LQ15477 1246 aaKnown RBP6.67□□□□□ -1.34
SPG11-220ENST00000559933 LRP10Q7Z4F1 713 aa6.67□□□□□ -1.34
SPG11-220ENST00000559933 FAM174AQ8TBP5 190 aa6.67□□□□□ -1.34
SPG11-220ENST00000559933 PANK1Q8TE04 598 aa6.67□□□□□ -1.34
SPG11-220ENST00000559933 HPS1Q92902 700 aa6.67□□□□□ -1.34
SPG11-220ENST00000559933 LRRC4BQ9NT99 713 aa6.67□□□□□ -1.34
SPG11-220ENST00000559933 ZBTB1Q9Y2K1 713 aa6.67□□□□□ -1.34
SPG11-220ENST00000559933 RNF123Q5XPI4 1314 aa6.67□□□□□ -1.34
SPG11-220ENST00000559933 C4BP0C0L5 1744 aa6.67□□□□□ -1.34
SPG11-220ENST00000559933 TUBGCP6Q96RT7 1819 aa6.66□□□□□ -1.34
SPG11-220ENST00000559933 APBA3O96018 575 aa6.66□□□□□ -1.34
SPG11-220ENST00000559933 CYP19A1P11511 503 aaPredicted RBP6.66□□□□□ -1.34
SPG11-220ENST00000559933 TRIM27P14373 513 aa6.66□□□□□ -1.34
SPG11-220ENST00000559933 CRKLP46109 303 aaKnown RBP6.66□□□□□ -1.34
SPG11-220ENST00000559933 FLIIQ13045 1269 aa6.66□□□□□ -1.34
SPG11-220ENST00000559933 SH3D19Q5HYK7 790 aa6.66□□□□□ -1.34
SPG11-220ENST00000559933 RTL5Q5HYW3 569 aaPredicted RBP6.66□□□□□ -1.34
SPG11-220ENST00000559933 CCDC30Q5VVM6 783 aa6.66□□□□□ -1.34
SPG11-220ENST00000559933 DEFB132Q7Z7B7 95 aa6.66□□□□□ -1.34
SPG11-220ENST00000559933 XAGE3Q8WTP9 111 aa6.66□□□□□ -1.34
SPG11-220ENST00000559933 CRBNQ96SW2 442 aa6.66□□□□□ -1.34
SPG11-220ENST00000559933 FAM117AQ9C073 453 aa6.66□□□□□ -1.34
SPG11-220ENST00000559933 CCNL1Q9UK58 526 aaPredicted RBP6.66□□□□□ -1.34
SPG11-220ENST00000559933 NUP188Q5SRE5 1749 aa6.66□□□□□ -1.34
SPG11-220ENST00000559933 ARFGEF2Q9Y6D5 1785 aa6.66□□□□□ -1.34
SPG11-220ENST00000559933 ADCY9O60503 1353 aa6.66□□□□□ -1.34
SPG11-220ENST00000559933 ZNF831Q5JPB2 1677 aa6.65□□□□□ -1.34
SPG11-220ENST00000559933 F12P00748 615 aaPredicted RBP6.65□□□□□ -1.34
SPG11-220ENST00000559933 HOXB7P09629 217 aa6.65□□□□□ -1.34
SPG11-220ENST00000559933 CT47B1P0C2W7 299 aaPredicted RBP6.65□□□□□ -1.34
SPG11-220ENST00000559933 EZH2Q15910 746 aaKnown RBP6.65□□□□□ -1.34
SPG11-220ENST00000559933 ALDH1L2Q3SY69 923 aa6.65□□□□□ -1.34
SPG11-220ENST00000559933 INTS5Q6P9B9 1019 aaKnown RBP6.65□□□□□ -1.34
SPG11-220ENST00000559933 TTLL7Q6ZT98 887 aa6.65□□□□□ -1.34
SPG11-220ENST00000559933 BPHLQ86WA6 291 aaPredicted RBP6.65□□□□□ -1.34
SPG11-220ENST00000559933 SMARCC1Q92922 1105 aaPredicted RBP6.65□□□□□ -1.34
SPG11-220ENST00000559933 STK31Q9BXU1 1019 aa6.65□□□□□ -1.34
SPG11-220ENST00000559933 SENP2Q9HC62 589 aa6.65□□□□□ -1.34
SPG11-220ENST00000559933 C4AP0C0L4 1744 aa6.64□□□□□ -1.35
SPG11-220ENST00000559933 POTECB2RU33 542 aa6.64□□□□□ -1.35
SPG11-220ENST00000559933 SIAH2O43255 324 aa6.64□□□□□ -1.35
SPG11-220ENST00000559933 FKBP5Q13451 457 aaPredicted RBP6.64□□□□□ -1.35
SPG11-220ENST00000559933 TXNRD1Q16881 649 aa6.64□□□□□ -1.35
SPG11-220ENST00000559933 ZNF827Q17R98 1081 aa6.64□□□□□ -1.35
SPG11-220ENST00000559933 ZKSCAN2Q63HK3 967 aa6.64□□□□□ -1.35
SPG11-220ENST00000559933 ATF7IPQ6VMQ6 1270 aa6.64□□□□□ -1.35
SPG11-220ENST00000559933 COPS6Q7L5N1 327 aa6.64□□□□□ -1.35
SPG11-220ENST00000559933 TMEM57Q8N5G2 664 aa6.64□□□□□ -1.35
SPG11-220ENST00000559933 EXOC6Q8TAG9 804 aa6.64□□□□□ -1.35
SPG11-220ENST00000559933 ATP13A2Q9NQ11 1180 aa6.64□□□□□ -1.35
SPG11-220ENST00000559933 DDX21Q9NR30 783 aaKnown RBP eCLIP6.64□□□□□ -1.35
SPG11-220ENST00000559933 GMPR2Q9P2T1 348 aaKnown RBP6.64□□□□□ -1.35
SPG11-220ENST00000559933 DACH1Q9UI36 760 aa6.64□□□□□ -1.35
SPG11-220ENST00000559933 COG6Q9Y2V7 657 aa6.64□□□□□ -1.35
SPG11-220ENST00000559933 ABCC4O15439 1325 aa6.64□□□□□ -1.35
SPG11-220ENST00000559933 KIF16BQ96L93 1317 aa6.64□□□□□ -1.35
SPG11-220ENST00000559933 SCN7AQ01118 1682 aa6.64□□□□□ -1.35
SPG11-220ENST00000559933 RGPD3A6NKT7 1758 aaPredicted RBP6.64□□□□□ -1.35
SPG11-220ENST00000559933 BCORQ6W2J9 1755 aa6.64□□□□□ -1.35
SPG11-220ENST00000559933 RGPD4Q7Z3J3 1758 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms