RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 ANKRD24Q8TF21 1146 aa19.07■□□□□ 0.64
SHMT2-232ENST00000557487 NGLY1Q96IV0 654 aa19.07■□□□□ 0.64
SHMT2-232ENST00000557487 IMPACTQ9P2X3 320 aa19.07■□□□□ 0.64
SHMT2-232ENST00000557487 AFF2P51816 1311 aa19.06■□□□□ 0.64
SHMT2-232ENST00000557487 GCP02774 474 aa19.06■□□□□ 0.64
SHMT2-232ENST00000557487 TUBB4AP04350 444 aa19.06■□□□□ 0.64
SHMT2-232ENST00000557487 GABPB1Q06547 395 aaPredicted RBP19.06■□□□□ 0.64
SHMT2-232ENST00000557487 KBTBD3Q8NAB2 608 aa19.06■□□□□ 0.64
SHMT2-232ENST00000557487 CTNNA3Q9UI47 895 aa19.06■□□□□ 0.64
SHMT2-232ENST00000557487 U2AF2P26368 475 aaKnown RBP eCLIP19.06■□□□□ 0.644e-8■■□□□ 14.1
SHMT2-232ENST00000557487 PTPN12Q05209 780 aaKnown RBP19.06■□□□□ 0.64
SHMT2-232ENST00000557487 PTPN14Q15678 1187 aa19.06■□□□□ 0.64
SHMT2-232ENST00000557487 CCDC144BQ3MJ40 725 aa19.06■□□□□ 0.64
SHMT2-232ENST00000557487 ZNF790Q6PG37 636 aa19.06■□□□□ 0.64
SHMT2-232ENST00000557487 NYAP1Q6ZVC0 841 aa19.06■□□□□ 0.64
SHMT2-232ENST00000557487 CCDC144CPQ8IYA2 1237 aa19.06■□□□□ 0.64
SHMT2-232ENST00000557487 FBXL16Q8N461 479 aa19.06■□□□□ 0.64
SHMT2-232ENST00000557487 RGS22Q8NE09 1264 aa19.06■□□□□ 0.64
SHMT2-232ENST00000557487 ENGASEQ8NFI3 743 aa19.06■□□□□ 0.64
SHMT2-232ENST00000557487 PRAMEF22A3QJZ6 481 aa19.05■□□□□ 0.64
SHMT2-232ENST00000557487 ZNF274Q96GC6 653 aaPredicted RBP19.05■□□□□ 0.64
SHMT2-232ENST00000557487 GPR108Q9NPR9 543 aa19.05■□□□□ 0.64
SHMT2-232ENST00000557487 A0A1W2PQ27 194 aa19.04■□□□□ 0.64
SHMT2-232ENST00000557487 A0A1W2PQ64 194 aa19.04■□□□□ 0.64
SHMT2-232ENST00000557487 A0A1W2PQD8 194 aa19.04■□□□□ 0.64
SHMT2-232ENST00000557487 EXOSC10Q01780 885 aaKnown RBP19.04■□□□□ 0.64
SHMT2-232ENST00000557487 TFCP2Q12800 502 aa19.04■□□□□ 0.64
SHMT2-232ENST00000557487 SNW1Q13573 536 aaKnown RBP19.04■□□□□ 0.64
SHMT2-232ENST00000557487 C11orf57Q6ZUT1 292 aaPredicted RBP19.04■□□□□ 0.64
SHMT2-232ENST00000557487 XAGE3Q8WTP9 111 aa19.04■□□□□ 0.64
SHMT2-232ENST00000557487 MYD88Q99836 296 aa19.04■□□□□ 0.64
SHMT2-232ENST00000557487 BPIFA3Q9BQP9 254 aa19.04■□□□□ 0.64
SHMT2-232ENST00000557487 ABCC6O95255 1503 aa19.04■□□□□ 0.64
SHMT2-232ENST00000557487 SALL1Q9NSC2 1324 aa19.04■□□□□ 0.64
SHMT2-232ENST00000557487 PTPDC1A2A3K4 754 aa19.04■□□□□ 0.64
SHMT2-232ENST00000557487 SKILP12757 684 aa19.04■□□□□ 0.64
SHMT2-232ENST00000557487 KCNJ6P48051 423 aa19.04■□□□□ 0.64
SHMT2-232ENST00000557487 SLFNL1Q499Z3 407 aa19.04■□□□□ 0.64
SHMT2-232ENST00000557487 EPHA10Q5JZY3 1008 aa19.04■□□□□ 0.64
SHMT2-232ENST00000557487 POTEAQ6S8J7 498 aa19.04■□□□□ 0.64
SHMT2-232ENST00000557487 ANKRD13DQ6ZTN6 518 aa19.04■□□□□ 0.64
SHMT2-232ENST00000557487 DDX11Q96FC9 970 aa19.04■□□□□ 0.64
SHMT2-232ENST00000557487 DDX41Q9UJV9 622 aaKnown RBP19.04■□□□□ 0.64
SHMT2-232ENST00000557487 OSBPL5Q9H0X9 879 aaPredicted RBP19.03■□□□□ 0.64
SHMT2-232ENST00000557487 SLC52A2Q9HAB3 445 aa19.03■□□□□ 0.64
SHMT2-232ENST00000557487 MORC2Q9Y6X9 1032 aaPredicted RBP19.03■□□□□ 0.64
SHMT2-232ENST00000557487 SLIT2O94813 1529 aa19.03■□□□□ 0.64
SHMT2-232ENST00000557487 COPS6Q7L5N1 327 aa19.02■□□□□ 0.64
SHMT2-232ENST00000557487 DHX40Q8IX18 779 aaKnown RBP19.02■□□□□ 0.64
SHMT2-232ENST00000557487 ZNF397Q8NF99 534 aaPredicted RBP19.02■□□□□ 0.64
SHMT2-232ENST00000557487 KLHDC4Q8TBB5 520 aa19.02■□□□□ 0.64
SHMT2-232ENST00000557487 ERO1AQ96HE7 468 aa19.02■□□□□ 0.64
SHMT2-232ENST00000557487 CCDC69A6NI79 296 aa19.02■□□□□ 0.63
SHMT2-232ENST00000557487 TAF3Q5VWG9 929 aa19.02■□□□□ 0.63
SHMT2-232ENST00000557487 KIF18AQ8NI77 898 aa19.02■□□□□ 0.63
SHMT2-232ENST00000557487 EDC3Q96F86 508 aaKnown RBP19.02■□□□□ 0.63
SHMT2-232ENST00000557487 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.02■□□□□ 0.63
SHMT2-232ENST00000557487 RTEL1Q9NZ71 1219 aa19.02■□□□□ 0.63
SHMT2-232ENST00000557487 C5P01031 1676 aa19.01■□□□□ 0.63
SHMT2-232ENST00000557487 SPDYE4A6NLX3 237 aa19.01■□□□□ 0.63
SHMT2-232ENST00000557487 NRDCO43847 1150 aa19.01■□□□□ 0.63
SHMT2-232ENST00000557487 FAM193AP78312 1265 aa19.01■□□□□ 0.63
SHMT2-232ENST00000557487 CCZ1BP86790 482 aa19.01■□□□□ 0.63
SHMT2-232ENST00000557487 CCZ1P86791 482 aaPredicted RBP19.01■□□□□ 0.63
SHMT2-232ENST00000557487 ADALQ6DHV7 355 aa19.01■□□□□ 0.63
SHMT2-232ENST00000557487 CCDC150Q8NCX0 1101 aa19.01■□□□□ 0.63
SHMT2-232ENST00000557487 MRPS27Q92552 414 aaKnown RBP19.01■□□□□ 0.63
SHMT2-232ENST00000557487 USP28Q96RU2 1077 aa19.01■□□□□ 0.63
SHMT2-232ENST00000557487 DNAJC2Q99543 621 aaKnown RBP19.01■□□□□ 0.63
SHMT2-232ENST00000557487 GOLPH3LQ9H4A5 285 aa19.01■□□□□ 0.63
SHMT2-232ENST00000557487 USP21Q9UK80 565 aa19.01■□□□□ 0.63
SHMT2-232ENST00000557487 BCL9LQ86UU0 1499 aa19.01■□□□□ 0.63
SHMT2-232ENST00000557487 SCN11AQ9UI33 1791 aa19.01■□□□□ 0.63
SHMT2-232ENST00000557487 SPEF2Q9C093 1822 aa19■□□□□ 0.63
SHMT2-232ENST00000557487 CTDNEP1O95476 244 aa19■□□□□ 0.63
SHMT2-232ENST00000557487 EVCP57679 992 aa19■□□□□ 0.63
SHMT2-232ENST00000557487 STOX1Q6ZVD7 989 aa19■□□□□ 0.63
SHMT2-232ENST00000557487 CCAR2Q8N163 923 aaKnown RBP19■□□□□ 0.63
SHMT2-232ENST00000557487 FSIP1Q8NA03 581 aa19■□□□□ 0.63
SHMT2-232ENST00000557487 DBNDD2Q9BQY9 259 aa19■□□□□ 0.63
SHMT2-232ENST00000557487 CPDO75976 1380 aa19■□□□□ 0.63
SHMT2-232ENST00000557487 SNRPA1P09661 255 aaKnown RBP19■□□□□ 0.63
SHMT2-232ENST00000557487 TPM4P67936 248 aa19■□□□□ 0.63
SHMT2-232ENST00000557487 LRRFIP1Q32MZ4 808 aaKnown RBP19■□□□□ 0.63
SHMT2-232ENST00000557487 ZMYM1Q5SVZ6 1142 aa19■□□□□ 0.63
SHMT2-232ENST00000557487 ILDR2Q71H61 639 aa19■□□□□ 0.63
SHMT2-232ENST00000557487 ME1P48163 572 aa18.99■□□□□ 0.63
SHMT2-232ENST00000557487 ZRSR1Q15695 479 aaKnown RBP18.99■□□□□ 0.63
SHMT2-232ENST00000557487 CCDC129Q6ZRS4 1044 aa18.99■□□□□ 0.63
SHMT2-232ENST00000557487 LRP10Q7Z4F1 713 aa18.99■□□□□ 0.63
SHMT2-232ENST00000557487 FMR1NBQ8N0W7 255 aaPredicted RBP18.99■□□□□ 0.63
SHMT2-232ENST00000557487 KCNG4Q8TDN1 519 aa18.99■□□□□ 0.63
SHMT2-232ENST00000557487 YEATS4O95619 227 aa18.98■□□□□ 0.63
SHMT2-232ENST00000557487 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.98■□□□□ 0.63
SHMT2-232ENST00000557487 LAMA4Q16363 1823 aa18.98■□□□□ 0.63
SHMT2-232ENST00000557487 PSDA5PKW4 1024 aaPredicted RBP18.98■□□□□ 0.63
SHMT2-232ENST00000557487 DHX16O60231 1041 aaKnown RBP18.98■□□□□ 0.63
SHMT2-232ENST00000557487 MYL6BP14649 208 aa18.98■□□□□ 0.63
SHMT2-232ENST00000557487 APOBRQ0VD83 1088 aa18.98■□□□□ 0.63
SHMT2-232ENST00000557487 RAPGEF4Q8WZA2 1011 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms