RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, human

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SLIRP-208	ENST00000556956	C2orf49	Q9BVC5	232 aa	Predicted RBP	4.22	□□□□□ -1.73
SLIRP-208	ENST00000556956	GSX2	Q9BZM3	304 aa		4.22	□□□□□ -1.73
SLIRP-208	ENST00000556956	PHACTR1	Q9C0D0	580 aa		4.22	□□□□□ -1.73
SLIRP-208	ENST00000556956	ATG3	Q9NT62	314 aa		4.22	□□□□□ -1.73
SLIRP-208	ENST00000556956	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	4.22	□□□□□ -1.73
SLIRP-208	ENST00000556956	CLSPN	Q9HAW4	1339 aa		4.21	□□□□□ -1.73
SLIRP-208	ENST00000556956	USP17L15	C9J2P7	530 aa		4.21	□□□□□ -1.74
SLIRP-208	ENST00000556956	USP17L10	C9JJH3	530 aa		4.21	□□□□□ -1.74
SLIRP-208	ENST00000556956	USP17L13	C9JLJ4	530 aa		4.21	□□□□□ -1.74
SLIRP-208	ENST00000556956	USP17L12	C9JPN9	530 aa		4.21	□□□□□ -1.74
SLIRP-208	ENST00000556956	USP17L11	C9JVI0	530 aa		4.21	□□□□□ -1.74
SLIRP-208	ENST00000556956	USP17L21	D6R901	530 aa		4.21	□□□□□ -1.74
SLIRP-208	ENST00000556956	USP17L18	D6R9N7	530 aa		4.21	□□□□□ -1.74
SLIRP-208	ENST00000556956	USP17L22	D6RA61	530 aa		4.21	□□□□□ -1.74
SLIRP-208	ENST00000556956	USP17L17	D6RBQ6	530 aa		4.21	□□□□□ -1.74
SLIRP-208	ENST00000556956	USP17L19	D6RCP7	530 aa		4.21	□□□□□ -1.74
SLIRP-208	ENST00000556956	USP17L20	D6RJB6	530 aa		4.21	□□□□□ -1.74
SLIRP-208	ENST00000556956	DKK1	O94907	266 aa		4.21	□□□□□ -1.74
SLIRP-208	ENST00000556956	TSPAN15	O95858	294 aa		4.21	□□□□□ -1.74
SLIRP-208	ENST00000556956	USP17L24	Q0WX57	530 aa		4.21	□□□□□ -1.74
SLIRP-208	ENST00000556956	CRTC2	Q53ET0	693 aa	Predicted RBP	4.21	□□□□□ -1.74
SLIRP-208	ENST00000556956	ALDH16A1	Q8IZ83	802 aa		4.21	□□□□□ -1.74
SLIRP-208	ENST00000556956	GALNT11	Q8NCW6	608 aa		4.21	□□□□□ -1.74
SLIRP-208	ENST00000556956	RELT	Q969Z4	430 aa		4.21	□□□□□ -1.74
SLIRP-208	ENST00000556956	CCDC97	Q96F63	343 aa	Predicted RBP	4.21	□□□□□ -1.74
SLIRP-208	ENST00000556956	KCNK4	Q9NYG8	393 aa		4.21	□□□□□ -1.74
SLIRP-208	ENST00000556956	SERPINA10	Q9UK55	444 aa		4.21	□□□□□ -1.74
SLIRP-208	ENST00000556956	RB1CC1	Q8TDY2	1594 aa		4.21	□□□□□ -1.74
SLIRP-208	ENST00000556956	EPB42	P16452	691 aa		4.2	□□□□□ -1.74
SLIRP-208	ENST00000556956	RTN1	Q16799	776 aa		4.2	□□□□□ -1.74
SLIRP-208	ENST00000556956	ZNF574	Q6ZN55	896 aa	Predicted RBP	4.2	□□□□□ -1.74
SLIRP-208	ENST00000556956	KIAA1211	Q6ZU35	1233 aa		4.2	□□□□□ -1.74
SLIRP-208	ENST00000556956	ATG4D	Q86TL0	474 aa	Predicted RBP	4.2	□□□□□ -1.74
SLIRP-208	ENST00000556956	WFDC3	Q8IUB2	231 aa		4.2	□□□□□ -1.74
SLIRP-208	ENST00000556956	IL22RA1	Q8N6P7	574 aa		4.2	□□□□□ -1.74
SLIRP-208	ENST00000556956	GLIS3	Q8NEA6	775 aa		4.2	□□□□□ -1.74
SLIRP-208	ENST00000556956	OSBPL1A	Q9BXW6	950 aa		4.2	□□□□□ -1.74
SLIRP-208	ENST00000556956	RSF1	Q96T23	1441 aa	Predicted RBP	4.2	□□□□□ -1.74
SLIRP-208	ENST00000556956	LRRC10B	A6NIK2	292 aa		4.19	□□□□□ -1.74
SLIRP-208	ENST00000556956	FOXO3	O43524	673 aa		4.19	□□□□□ -1.74
SLIRP-208	ENST00000556956	C21orf2	O43822	256 aa		4.19	□□□□□ -1.74
SLIRP-208	ENST00000556956	ELOA	Q14241	798 aa	Known RBP	4.19	□□□□□ -1.74
SLIRP-208	ENST00000556956	PLCL1	Q15111	1095 aa		4.19	□□□□□ -1.74
SLIRP-208	ENST00000556956	PCSK7	Q16549	785 aa		4.19	□□□□□ -1.74
SLIRP-208	ENST00000556956	SWI5	Q1ZZU3	235 aa		4.19	□□□□□ -1.74
SLIRP-208	ENST00000556956	CFAP70	Q5T0N1	1121 aa		4.19	□□□□□ -1.74
SLIRP-208	ENST00000556956	IER5	Q5VY09	327 aa		4.19	□□□□□ -1.74
SLIRP-208	ENST00000556956	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	4.19	□□□□□ -1.74
SLIRP-208	ENST00000556956	SUSD3	Q96L08	255 aa		4.19	□□□□□ -1.74
SLIRP-208	ENST00000556956	PNMA5	Q96PV4	448 aa		4.19	□□□□□ -1.74
SLIRP-208	ENST00000556956	C11orf16	Q9NQ32	467 aa		4.19	□□□□□ -1.74
SLIRP-208	ENST00000556956	ABCC9	O60706	1549 aa		4.19	□□□□□ -1.74
SLIRP-208	ENST00000556956	SCRIB	Q14160	1630 aa		4.18	□□□□□ -1.74
SLIRP-208	ENST00000556956	ARID4A	P29374	1257 aa	Predicted RBP	4.18	□□□□□ -1.74
SLIRP-208	ENST00000556956	WEE1	P30291	646 aa		4.18	□□□□□ -1.74
SLIRP-208	ENST00000556956	GDF6	Q6KF10	455 aa	Predicted RBP	4.18	□□□□□ -1.74
SLIRP-208	ENST00000556956	HFE2	Q6ZVN8	426 aa		4.18	□□□□□ -1.74
SLIRP-208	ENST00000556956	BTLA	Q7Z6A9	289 aa		4.18	□□□□□ -1.74
SLIRP-208	ENST00000556956	AMIGO3	Q86WK7	504 aa		4.18	□□□□□ -1.74
SLIRP-208	ENST00000556956	ANKLE2	Q86XL3	938 aa		4.18	□□□□□ -1.74
SLIRP-208	ENST00000556956	NGLY1	Q96IV0	654 aa		4.18	□□□□□ -1.74
SLIRP-208	ENST00000556956	SRA1	Q9HD15	236 aa	Known RBP	4.18	□□□□□ -1.74
SLIRP-208	ENST00000556956	TGFBR3L	H3BV60	316 aa		4.17	□□□□□ -1.74
SLIRP-208	ENST00000556956	CYP26A1	O43174	497 aa		4.17	□□□□□ -1.74
SLIRP-208	ENST00000556956	SUV39H1	O43463	412 aa		4.17	□□□□□ -1.74
SLIRP-208	ENST00000556956	PREP	P48147	710 aa		4.17	□□□□□ -1.74
SLIRP-208	ENST00000556956	C11orf91	Q3C1V1	193 aa		4.17	□□□□□ -1.74
SLIRP-208	ENST00000556956	CDCA8	Q53HL2	280 aa		4.17	□□□□□ -1.74
SLIRP-208	ENST00000556956	MAP4K3	Q8IVH8	894 aa		4.17	□□□□□ -1.74
SLIRP-208	ENST00000556956	TRPM4	Q8TD43	1214 aa		4.17	□□□□□ -1.74
SLIRP-208	ENST00000556956	ARX	Q96QS3	562 aa		4.17	□□□□□ -1.74
SLIRP-208	ENST00000556956	ZFAT	Q9P243	1243 aa		4.17	□□□□□ -1.74
SLIRP-208	ENST00000556956	NOVA2	Q9UNW9	492 aa	Known RBP	4.17	□□□□□ -1.74
SLIRP-208	ENST00000556956	FOXD2	O60548	495 aa	Predicted RBP	4.16	□□□□□ -1.74
SLIRP-208	ENST00000556956	ATG7	O95352	703 aa		4.16	□□□□□ -1.74
SLIRP-208	ENST00000556956	KRT1	P04264	644 aa		4.16	□□□□□ -1.74
SLIRP-208	ENST00000556956	CCIN	Q13939	588 aa		4.16	□□□□□ -1.74
SLIRP-208	ENST00000556956	SPRED2	Q7Z698	418 aa		4.16	□□□□□ -1.74
SLIRP-208	ENST00000556956	GIMAP7	Q8NHV1	300 aa		4.16	□□□□□ -1.74
SLIRP-208	ENST00000556956	PBXIP1	Q96AQ6	731 aa		4.16	□□□□□ -1.74
SLIRP-208	ENST00000556956	WRN	Q14191	1432 aa	Predicted RBP eCLIP	4.15	□□□□□ -1.74
SLIRP-208	ENST00000556956	OVOL3	O00110	214 aa		4.15	□□□□□ -1.75
SLIRP-208	ENST00000556956	TM4SF5	O14894	197 aa		4.15	□□□□□ -1.75
SLIRP-208	ENST00000556956	NFKB2	Q00653	900 aa		4.15	□□□□□ -1.75
SLIRP-208	ENST00000556956	CPSF6	Q16630	551 aa	Known RBP eCLIP	4.15	□□□□□ -1.75
SLIRP-208	ENST00000556956	MLANA	Q16655	118 aa		4.15	□□□□□ -1.75
SLIRP-208	ENST00000556956	DHX32	Q7L7V1	743 aa	Known RBP	4.15	□□□□□ -1.75
SLIRP-208	ENST00000556956	DCAF11	Q8TEB1	546 aa		4.15	□□□□□ -1.75
SLIRP-208	ENST00000556956	MYO19	Q96H55	970 aa		4.15	□□□□□ -1.75
SLIRP-208	ENST00000556956	YTHDC1	Q96MU7	727 aa	Known RBP	4.15	□□□□□ -1.75
SLIRP-208	ENST00000556956	FAM13B	Q9NYF5	915 aa		4.15	□□□□□ -1.75
SLIRP-208	ENST00000556956	PPP1R15A	O75807	674 aa	Predicted RBP	4.14	□□□□□ -1.75
SLIRP-208	ENST00000556956	MAP3K6	O95382	1288 aa		4.14	□□□□□ -1.75
SLIRP-208	ENST00000556956	C1QTNF9	P0C862	333 aa		4.14	□□□□□ -1.75
SLIRP-208	ENST00000556956	EIF2AK2	P19525	551 aa	Known RBP	4.14	□□□□□ -1.75
SLIRP-208	ENST00000556956	BRD2	P25440	801 aa	Known RBP	4.14	□□□□□ -1.75
SLIRP-208	ENST00000556956	CD68	P34810	354 aa	Predicted RBP	4.14	□□□□□ -1.75
SLIRP-208	ENST00000556956	ARSD	P51689	593 aa		4.14	□□□□□ -1.75
SLIRP-208	ENST00000556956	GPLD1	P80108	840 aa		4.14	□□□□□ -1.75
SLIRP-208	ENST00000556956	PLD4	Q96BZ4	506 aa		4.14	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms