RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 POTEB2H3BUK9 544 aa15.87■□□□□ 0.13
SHMT2-226ENST00000556825 CHGAP10645 457 aaKnown RBP15.87■□□□□ 0.13
SHMT2-226ENST00000556825 NAP1L1P55209 391 aaKnown RBP15.87■□□□□ 0.13
SHMT2-226ENST00000556825 TMEM132AQ24JP5 1023 aa15.87■□□□□ 0.13
SHMT2-226ENST00000556825 IL17RAQ96F46 866 aa15.87■□□□□ 0.13
SHMT2-226ENST00000556825 IRX2Q9BZI1 471 aaPredicted RBP15.87■□□□□ 0.13
SHMT2-226ENST00000556825 KLC4Q9NSK0 619 aa15.87■□□□□ 0.13
SHMT2-226ENST00000556825 LMCD1Q9NZU5 365 aa15.87■□□□□ 0.13
SHMT2-226ENST00000556825 RAB21Q9UL25 225 aa15.87■□□□□ 0.13
SHMT2-226ENST00000556825 SPHKAPQ2M3C7 1700 aa15.87■□□□□ 0.13
SHMT2-226ENST00000556825 VWDEQ8N2E2 1590 aa15.87■□□□□ 0.13
SHMT2-226ENST00000556825 SPDYE1Q8NFV5 336 aaPredicted RBP15.87■□□□□ 0.13
SHMT2-226ENST00000556825 MMTAG2Q9BU76 263 aaKnown RBP15.87■□□□□ 0.13
SHMT2-226ENST00000556825 BATF3Q9NR55 127 aa15.87■□□□□ 0.13
SHMT2-226ENST00000556825 DDX20Q9UHI6 824 aaKnown RBP15.87■□□□□ 0.13
SHMT2-226ENST00000556825 MRFAP1Q9Y605 127 aa15.87■□□□□ 0.13
SHMT2-226ENST00000556825 PHACTR2O75167 634 aa15.86■□□□□ 0.13
SHMT2-226ENST00000556825 CEP85LQ5SZL2 805 aa15.86■□□□□ 0.13
SHMT2-226ENST00000556825 HHATQ5VTY9 493 aa15.86■□□□□ 0.13
SHMT2-226ENST00000556825 TMTC2Q8N394 836 aa15.86■□□□□ 0.13
SHMT2-226ENST00000556825 MAGEC3Q8TD91 643 aa15.86■□□□□ 0.13
SHMT2-226ENST00000556825 SPDL1Q96EA4 605 aa15.86■□□□□ 0.13
SHMT2-226ENST00000556825 ATP6V0A4Q9HBG4 840 aa15.86■□□□□ 0.13
SHMT2-226ENST00000556825 DACT1Q9NYF0 836 aa15.86■□□□□ 0.13
SHMT2-226ENST00000556825 MYO6Q9UM54 1294 aa15.86■□□□□ 0.13
SHMT2-226ENST00000556825 PES1O00541 588 aaKnown RBP15.86■□□□□ 0.13
SHMT2-226ENST00000556825 EPB41L2O43491 1005 aaKnown RBP15.86■□□□□ 0.13
SHMT2-226ENST00000556825 RTN3O95197 1032 aaPredicted RBP15.86■□□□□ 0.13
SHMT2-226ENST00000556825 PYGLP06737 847 aa15.86■□□□□ 0.13
SHMT2-226ENST00000556825 PSME1Q06323 249 aa15.86■□□□□ 0.13
SHMT2-226ENST00000556825 FILIP1LQ4L180 1135 aa15.86■□□□□ 0.13
SHMT2-226ENST00000556825 AMOTQ4VCS5 1084 aa15.86■□□□□ 0.13
SHMT2-226ENST00000556825 RBM12BQ8IXT5 1001 aaKnown RBP15.86■□□□□ 0.13
SHMT2-226ENST00000556825 MLH3Q9UHC1 1453 aa15.86■□□□□ 0.13
SHMT2-226ENST00000556825 IL16Q14005 1332 aa15.85■□□□□ 0.13
SHMT2-226ENST00000556825 RPGRIP1LQ68CZ1 1315 aa15.85■□□□□ 0.13
SHMT2-226ENST00000556825 MYOM2P54296 1465 aa15.85■□□□□ 0.13
SHMT2-226ENST00000556825 EZRP15311 586 aaKnown RBP15.85■□□□□ 0.13
SHMT2-226ENST00000556825 TSR2Q969E8 191 aaKnown RBP15.85■□□□□ 0.13
SHMT2-226ENST00000556825 GOPCQ9HD26 462 aa15.85■□□□□ 0.13
SHMT2-226ENST00000556825 BLOC1S6Q9UL45 172 aa15.85■□□□□ 0.13
SHMT2-226ENST00000556825 PPRC1Q5VV67 1664 aaKnown RBP15.85■□□□□ 0.13
SHMT2-226ENST00000556825 ABCC11Q96J66 1382 aa15.85■□□□□ 0.13
SHMT2-226ENST00000556825 SMTNP53814 917 aa15.84■□□□□ 0.13
SHMT2-226ENST00000556825 CASP8Q14790 479 aa15.84■□□□□ 0.13
SHMT2-226ENST00000556825 C1orf115Q9H7X2 142 aa15.84■□□□□ 0.13
SHMT2-226ENST00000556825 PTPRTO14522 1441 aa15.84■□□□□ 0.13
SHMT2-226ENST00000556825 HECW2Q9P2P5 1572 aa15.84■□□□□ 0.13
SHMT2-226ENST00000556825 MROH1Q8NDA8 1641 aa15.84■□□□□ 0.13
SHMT2-226ENST00000556825 TRPM2O94759 1503 aa15.84■□□□□ 0.13
SHMT2-226ENST00000556825 RNF40O75150 1001 aa15.84■□□□□ 0.13
SHMT2-226ENST00000556825 PEX19P40855 299 aa15.84■□□□□ 0.13
SHMT2-226ENST00000556825 ARMCX5Q6P1M9 558 aa15.84■□□□□ 0.13
SHMT2-226ENST00000556825 OR8K1Q8NGG5 319 aa15.84■□□□□ 0.13
SHMT2-226ENST00000556825 ARHGEF1Q92888 912 aaKnown RBP15.84■□□□□ 0.13
SHMT2-226ENST00000556825 STK31Q9BXU1 1019 aa15.84■□□□□ 0.13
SHMT2-226ENST00000556825 MAF1Q9H063 256 aa15.84■□□□□ 0.13
SHMT2-226ENST00000556825 CHMP3Q9Y3E7 222 aa15.84■□□□□ 0.13
SHMT2-226ENST00000556825 MAP3K4Q9Y6R4 1608 aa15.84■□□□□ 0.13
SHMT2-226ENST00000556825 SFPQP23246 707 aaKnown RBP eCLIP15.83■□□□□ 0.13
SHMT2-226ENST00000556825 KCNB1Q14721 858 aa15.83■□□□□ 0.13
SHMT2-226ENST00000556825 MYSM1Q5VVJ2 828 aa15.83■□□□□ 0.13
SHMT2-226ENST00000556825 TTC6Q86TZ1 520 aa15.83■□□□□ 0.13
SHMT2-226ENST00000556825 C16orf71Q8IYS4 520 aaPredicted RBP15.83■□□□□ 0.13
SHMT2-226ENST00000556825 LMBR1Q8WVP7 490 aa15.83■□□□□ 0.13
SHMT2-226ENST00000556825 ABCB6Q9NP58 842 aa15.83■□□□□ 0.13
SHMT2-226ENST00000556825 PALD1Q9ULE6 856 aa15.83■□□□□ 0.13
SHMT2-226ENST00000556825 CEP152O94986 1710 aa15.83■□□□□ 0.13
SHMT2-226ENST00000556825 RNF17Q9BXT8 1623 aaKnown RBP15.83■□□□□ 0.12
SHMT2-226ENST00000556825 SHTN1A0MZ66 631 aa15.83■□□□□ 0.12
SHMT2-226ENST00000556825 ACTN3Q08043 901 aaPredicted RBP15.83■□□□□ 0.12
SHMT2-226ENST00000556825 MSANTD4Q8NCY6 345 aa15.83■□□□□ 0.12
SHMT2-226ENST00000556825 DCTPP1Q9H773 170 aa15.83■□□□□ 0.12
SHMT2-226ENST00000556825 ANKZF1Q9H8Y5 726 aa15.83■□□□□ 0.12
SHMT2-226ENST00000556825 SHPRHQ149N8 1683 aa15.83■□□□□ 0.12
SHMT2-226ENST00000556825 ENO4A6NNW6 628 aa15.82■□□□□ 0.12
SHMT2-226ENST00000556825 RASSF9O75901 435 aa15.82■□□□□ 0.12
SHMT2-226ENST00000556825 PRPF6O94906 941 aaKnown RBP15.82■□□□□ 0.12
SHMT2-226ENST00000556825 TTLL7Q6ZT98 887 aa15.82■□□□□ 0.12
SHMT2-226ENST00000556825 CCDC50Q8IVM0 306 aa15.82■□□□□ 0.12
SHMT2-226ENST00000556825 KIRREL3Q8IZU9 778 aa15.82■□□□□ 0.12
SHMT2-226ENST00000556825 EZH1Q92800 747 aaPredicted RBP15.82■□□□□ 0.12
SHMT2-226ENST00000556825 H7C1W4 665 aa15.82■□□□□ 0.12
SHMT2-226ENST00000556825 KIAA0754O94854 1291 aa15.82■□□□□ 0.12
SHMT2-226ENST00000556825 AARSP49588 968 aaKnown RBP eCLIP15.82■□□□□ 0.12
SHMT2-226ENST00000556825 IRAK1P51617 712 aa15.82■□□□□ 0.12
SHMT2-226ENST00000556825 SPATS2Q86XZ4 545 aaKnown RBP15.82■□□□□ 0.12
SHMT2-226ENST00000556825 GBP3Q9H0R5 595 aa15.82■□□□□ 0.12
SHMT2-226ENST00000556825 MTMR6Q9Y217 621 aa15.82■□□□□ 0.12
SHMT2-226ENST00000556825 GLI2P10070 1586 aa15.81■□□□□ 0.12
SHMT2-226ENST00000556825 BECN2A8MW95 431 aa15.81■□□□□ 0.12
SHMT2-226ENST00000556825 RAPGEF3O95398 923 aa15.81■□□□□ 0.12
SHMT2-226ENST00000556825 GBP2P32456 591 aaPredicted RBP15.81■□□□□ 0.12
SHMT2-226ENST00000556825 ARHGAP25P42331 645 aa15.81■□□□□ 0.12
SHMT2-226ENST00000556825 ZRSR2Q15696 482 aaKnown RBP15.81■□□□□ 0.12
SHMT2-226ENST00000556825 ALDH1L2Q3SY69 923 aa15.81■□□□□ 0.12
SHMT2-226ENST00000556825 B4GALNT4Q76KP1 1039 aa15.81■□□□□ 0.12
SHMT2-226ENST00000556825 CEP57Q86XR8 500 aa15.81■□□□□ 0.12
SHMT2-226ENST00000556825 PLEKHG4BQ96PX9 1271 aa15.81■□□□□ 0.12
SHMT2-226ENST00000556825 NAT10Q9H0A0 1025 aaKnown RBP15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms