RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 CTNNA3Q9UI47 895 aa14.17□□□□□ -0.14
CCDC88C-211ENST00000556726 E7EWF7 191 aa14.17□□□□□ -0.14
CCDC88C-211ENST00000556726 RIOK3O14730 519 aaKnown RBP14.17□□□□□ -0.14
CCDC88C-211ENST00000556726 ADAMTS2O95450 1211 aa14.17□□□□□ -0.14
CCDC88C-211ENST00000556726 CFAP100Q494V2 611 aa14.17□□□□□ -0.14
CCDC88C-211ENST00000556726 KLHL10Q6JEL2 608 aa14.17□□□□□ -0.14
CCDC88C-211ENST00000556726 PLBD2Q8NHP8 589 aa14.17□□□□□ -0.14
CCDC88C-211ENST00000556726 LRP2BPQ9P2M1 347 aa14.17□□□□□ -0.14
CCDC88C-211ENST00000556726 ERICH2A1L162 156 aa14.16□□□□□ -0.14
CCDC88C-211ENST00000556726 EYA2O00167 538 aa14.16□□□□□ -0.14
CCDC88C-211ENST00000556726 DYNC1I1O14576 645 aa14.16□□□□□ -0.14
CCDC88C-211ENST00000556726 RNF113AO15541 343 aaKnown RBP14.16□□□□□ -0.14
CCDC88C-211ENST00000556726 ARID5BQ14865 1188 aa14.16□□□□□ -0.14
CCDC88C-211ENST00000556726 NRKQ7Z2Y5 1582 aa14.16□□□□□ -0.14
CCDC88C-211ENST00000556726 MIGA1Q8NAN2 632 aa14.16□□□□□ -0.14
CCDC88C-211ENST00000556726 XAGE2Q96GT9 111 aa14.16□□□□□ -0.14
CCDC88C-211ENST00000556726 SKILP12757 684 aa14.16□□□□□ -0.14
CCDC88C-211ENST00000556726 SAFBQ15424 915 aaKnown RBP eCLIP14.16□□□□□ -0.14
CCDC88C-211ENST00000556726 CMTR1Q8N1G2 835 aaKnown RBP14.16□□□□□ -0.14
CCDC88C-211ENST00000556726 MRVI1Q9Y6F6 885 aa14.16□□□□□ -0.14
CCDC88C-211ENST00000556726 CCDC69A6NI79 296 aa14.15□□□□□ -0.14
CCDC88C-211ENST00000556726 IFIT3O14879 490 aaKnown RBP14.15□□□□□ -0.14
CCDC88C-211ENST00000556726 SLC26A6Q9BXS9 759 aa14.15□□□□□ -0.14
CCDC88C-211ENST00000556726 NAPBQ9H115 298 aa14.15□□□□□ -0.14
CCDC88C-211ENST00000556726 ANO10Q9NW15 660 aa14.15□□□□□ -0.14
CCDC88C-211ENST00000556726 JAG2Q9Y219 1238 aa14.15□□□□□ -0.14
CCDC88C-211ENST00000556726 B4E1Z4 1266 aa14.15□□□□□ -0.14
CCDC88C-211ENST00000556726 TPM3P06753 285 aa14.15□□□□□ -0.14
CCDC88C-211ENST00000556726 SLC3A2P08195 630 aaKnown RBP14.15□□□□□ -0.14
CCDC88C-211ENST00000556726 HMGB1P09429 215 aaKnown RBP14.15□□□□□ -0.14
CCDC88C-211ENST00000556726 HSPD1P10809 573 aaKnown RBP14.15□□□□□ -0.14
CCDC88C-211ENST00000556726 PTPN14Q15678 1187 aa14.15□□□□□ -0.14
CCDC88C-211ENST00000556726 MAP7D2Q96T17 732 aa14.15□□□□□ -0.14
CCDC88C-211ENST00000556726 STARD3NLO95772 234 aa14.15□□□□□ -0.14
CCDC88C-211ENST00000556726 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.15□□□□□ -0.14
CCDC88C-211ENST00000556726 STX1AQ16623 288 aa14.14□□□□□ -0.15
CCDC88C-211ENST00000556726 ZSCAN16Q9H4T2 348 aaPredicted RBP14.14□□□□□ -0.15
CCDC88C-211ENST00000556726 hCG_1642624A0A1W2PR95 340 aa14.14□□□□□ -0.15
CCDC88C-211ENST00000556726 METAP2P50579 478 aaKnown RBP eCLIP14.14□□□□□ -0.15
CCDC88C-211ENST00000556726 AIFM3Q96NN9 605 aa14.14□□□□□ -0.15
CCDC88C-211ENST00000556726 RAI14Q9P0K7 980 aa14.14□□□□□ -0.15
CCDC88C-211ENST00000556726 AKAP2Q9Y2D5 859 aa14.14□□□□□ -0.15
CCDC88C-211ENST00000556726 ADD1P35611 737 aaKnown RBP14.14□□□□□ -0.15
CCDC88C-211ENST00000556726 TMEM67Q5HYA8 995 aa14.14□□□□□ -0.15
CCDC88C-211ENST00000556726 NCOA7Q8NI08 942 aa14.14□□□□□ -0.15
CCDC88C-211ENST00000556726 ALG1Q9BT22 464 aa14.14□□□□□ -0.15
CCDC88C-211ENST00000556726 CLSTN2Q9H4D0 955 aa14.14□□□□□ -0.15
CCDC88C-211ENST00000556726 COPRSQ9NQ92 184 aa14.14□□□□□ -0.15
CCDC88C-211ENST00000556726 GOLGA8AA7E2F4 631 aa14.13□□□□□ -0.15
CCDC88C-211ENST00000556726 OLFM4Q6UX06 510 aa14.13□□□□□ -0.15
CCDC88C-211ENST00000556726 CPLX3Q8WVH0 158 aa14.13□□□□□ -0.15
CCDC88C-211ENST00000556726 PGBD1Q96JS3 809 aa14.13□□□□□ -0.15
CCDC88C-211ENST00000556726 INCENPQ9NQS7 918 aa14.13□□□□□ -0.15
CCDC88C-211ENST00000556726 RICTORQ6R327 1708 aa14.13□□□□□ -0.15
CCDC88C-211ENST00000556726 MRPS27Q92552 414 aaKnown RBP14.13□□□□□ -0.15
CCDC88C-211ENST00000556726 ANKRD18BA2A2Z9 1011 aa14.13□□□□□ -0.15
CCDC88C-211ENST00000556726 GPAA1O43292 621 aa14.13□□□□□ -0.15
CCDC88C-211ENST00000556726 C11orf57Q6ZUT1 292 aaPredicted RBP14.13□□□□□ -0.15
CCDC88C-211ENST00000556726 ASAP1Q9ULH1 1129 aa14.13□□□□□ -0.15
CCDC88C-211ENST00000556726 ST3GAL1Q11201 340 aa14.12□□□□□ -0.15
CCDC88C-211ENST00000556726 STOX1Q6ZVD7 989 aa14.12□□□□□ -0.15
CCDC88C-211ENST00000556726 CCDC24Q8N4L8 307 aa14.12□□□□□ -0.15
CCDC88C-211ENST00000556726 OSBP2Q969R2 916 aa14.12□□□□□ -0.15
CCDC88C-211ENST00000556726 HAUS7Q99871 368 aa14.12□□□□□ -0.15
CCDC88C-211ENST00000556726 IFNKQ9P0W0 207 aa14.12□□□□□ -0.15
CCDC88C-211ENST00000556726 U2AF2P26368 475 aaKnown RBP eCLIP14.12□□□□□ -0.15
CCDC88C-211ENST00000556726 MTX1Q13505 466 aa14.12□□□□□ -0.15
CCDC88C-211ENST00000556726 NAA30Q147X3 362 aaPredicted RBP14.12□□□□□ -0.15
CCDC88C-211ENST00000556726 PDIA6Q15084 440 aa14.12□□□□□ -0.15
CCDC88C-211ENST00000556726 CADPS2Q86UW7 1296 aa14.12□□□□□ -0.15
CCDC88C-211ENST00000556726 M0R2C6 588 aa14.11□□□□□ -0.15
CCDC88C-211ENST00000556726 SPTLC2O15270 562 aa14.11□□□□□ -0.15
CCDC88C-211ENST00000556726 RAD21O60216 631 aa14.11□□□□□ -0.15
CCDC88C-211ENST00000556726 SFPQP23246 707 aaKnown RBP eCLIP14.11□□□□□ -0.15
CCDC88C-211ENST00000556726 ZNF75DP51815 510 aa14.11□□□□□ -0.15
CCDC88C-211ENST00000556726 VIRMAQ69YN4 1812 aaKnown RBP14.11□□□□□ -0.15
CCDC88C-211ENST00000556726 AP5Z1O43299 807 aa14.11□□□□□ -0.15
CCDC88C-211ENST00000556726 FGAP02671 866 aa14.11□□□□□ -0.15
CCDC88C-211ENST00000556726 ITGA6P23229 1130 aa14.11□□□□□ -0.15
CCDC88C-211ENST00000556726 IARSP41252 1262 aaKnown RBP14.11□□□□□ -0.15
CCDC88C-211ENST00000556726 MNS1Q8NEH6 495 aa14.11□□□□□ -0.15
CCDC88C-211ENST00000556726 SLC12A7Q9Y666 1083 aa14.11□□□□□ -0.15
CCDC88C-211ENST00000556726 RANBP6O60518 1105 aaKnown RBP14.1□□□□□ -0.15
CCDC88C-211ENST00000556726 IL2RBP14784 551 aa14.1□□□□□ -0.15
CCDC88C-211ENST00000556726 MAST3O60307 1309 aa14.1□□□□□ -0.15
CCDC88C-211ENST00000556726 TECPR2O15040 1411 aa14.1□□□□□ -0.15
CCDC88C-211ENST00000556726 DLG5Q8TDM6 1919 aa14.1□□□□□ -0.15
CCDC88C-211ENST00000556726 NBPF26B4DH59 902 aa14.1□□□□□ -0.15
CCDC88C-211ENST00000556726 IRS4O14654 1257 aaPredicted RBP14.1□□□□□ -0.15
CCDC88C-211ENST00000556726 NBPF14Q5TI25 921 aa14.1□□□□□ -0.15
CCDC88C-211ENST00000556726 CEP135Q66GS9 1140 aa14.1□□□□□ -0.15
CCDC88C-211ENST00000556726 NBPF10Q6P3W6 841 aaKnown RBP14.1□□□□□ -0.15
CCDC88C-211ENST00000556726 NBPF15Q8N660 670 aa14.1□□□□□ -0.15
CCDC88C-211ENST00000556726 NSUN7Q8NE18 718 aaKnown RBP14.1□□□□□ -0.15
CCDC88C-211ENST00000556726 ZSWIM4Q9H7M6 989 aa14.1□□□□□ -0.15
CCDC88C-211ENST00000556726 BCL2L12Q9HB09 334 aa14.1□□□□□ -0.15
CCDC88C-211ENST00000556726 CLIC4Q9Y696 253 aa14.1□□□□□ -0.15
CCDC88C-211ENST00000556726 CTDSPL2Q05D32 466 aa14.1□□□□□ -0.15
CCDC88C-211ENST00000556726 CNNM3Q8NE01 707 aa14.1□□□□□ -0.15
CCDC88C-211ENST00000556726 SPATA31D1Q6ZQQ2 1576 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms