RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 CEP135Q66GS9 1140 aa8.26□□□□□ -1.09
SCFD1-221ENST00000556534 CCDC74AQ96AQ1 378 aa8.26□□□□□ -1.09
SCFD1-221ENST00000556534 OSMRQ99650 979 aa8.26□□□□□ -1.09
SCFD1-221ENST00000556534 A0A1W2PP55 124 aa8.25□□□□□ -1.09
SCFD1-221ENST00000556534 COL8A1P27658 744 aa8.25□□□□□ -1.09
SCFD1-221ENST00000556534 IRS1P35568 1242 aa8.25□□□□□ -1.09
SCFD1-221ENST00000556534 MSL1Q68DK7 614 aa8.25□□□□□ -1.09
SCFD1-221ENST00000556534 GDF6Q6KF10 455 aaPredicted RBP8.25□□□□□ -1.09
SCFD1-221ENST00000556534 TMEM102Q8N9M5 508 aaPredicted RBP8.25□□□□□ -1.09
SCFD1-221ENST00000556534 SETDB2Q96T68 719 aa8.25□□□□□ -1.09
SCFD1-221ENST00000556534 POP1Q99575 1024 aaKnown RBP8.25□□□□□ -1.09
SCFD1-221ENST00000556534 PLVAPQ9BX97 442 aa8.25□□□□□ -1.09
SCFD1-221ENST00000556534 PDE2AO00408 941 aaPredicted RBP8.24□□□□□ -1.09
SCFD1-221ENST00000556534 MAPK8P45983 427 aa8.24□□□□□ -1.09
SCFD1-221ENST00000556534 BHLHE41Q9C0J9 482 aaPredicted RBP8.24□□□□□ -1.09
SCFD1-221ENST00000556534 NOP53Q9NZM5 478 aaKnown RBP8.24□□□□□ -1.09
SCFD1-221ENST00000556534 KCNMA1Q12791 1236 aa8.23□□□□□ -1.09
SCFD1-221ENST00000556534 COL19A1Q14993 1142 aa8.23□□□□□ -1.09
SCFD1-221ENST00000556534 KIAA0319Q5VV43 1072 aa8.23□□□□□ -1.09
SCFD1-221ENST00000556534 WFDC8Q8IUA0 241 aa8.23□□□□□ -1.09
SCFD1-221ENST00000556534 NXPE3Q969Y0 559 aa8.23□□□□□ -1.09
SCFD1-221ENST00000556534 TCF12Q99081 682 aa8.23□□□□□ -1.09
SCFD1-221ENST00000556534 LACRTQ9GZZ8 138 aa8.23□□□□□ -1.09
SCFD1-221ENST00000556534 ADAM19Q9H013 955 aa8.23□□□□□ -1.09
SCFD1-221ENST00000556534 PTPRAP18433 802 aa8.22□□□□□ -1.09
SCFD1-221ENST00000556534 PI16Q6UXB8 463 aa8.22□□□□□ -1.09
SCFD1-221ENST00000556534 DMRTC2Q8IXT2 367 aaPredicted RBP8.22□□□□□ -1.09
SCFD1-221ENST00000556534 CACTIN-AS1Q8N1I8 211 aa8.22□□□□□ -1.09
SCFD1-221ENST00000556534 IL22RA1Q8N6P7 574 aa8.22□□□□□ -1.09
SCFD1-221ENST00000556534 EPS8L3Q8TE67 593 aaKnown RBP8.22□□□□□ -1.09
SCFD1-221ENST00000556534 WWC3Q9ULE0 1092 aa8.22□□□□□ -1.09
SCFD1-221ENST00000556534 A0A0A0MRY4 1105 aa8.21□□□□□ -1.1
SCFD1-221ENST00000556534 FAM229AH3BQW9 127 aa8.21□□□□□ -1.1
SCFD1-221ENST00000556534 EPHA1P21709 976 aa8.21□□□□□ -1.1
SCFD1-221ENST00000556534 CCNJLQ8IV13 435 aa8.21□□□□□ -1.1
SCFD1-221ENST00000556534 FBF1Q8TES7 1133 aa8.21□□□□□ -1.1
SCFD1-221ENST00000556534 LIN7BQ9HAP6 207 aa8.21□□□□□ -1.1
SCFD1-221ENST00000556534 SOX13Q9UN79 622 aa8.21□□□□□ -1.1
SCFD1-221ENST00000556534 SPDYE3A6NKU9 549 aa8.2□□□□□ -1.1
SCFD1-221ENST00000556534 METTL12A8MUP2 240 aa8.2□□□□□ -1.1
SCFD1-221ENST00000556534 CDC27P30260 824 aa8.2□□□□□ -1.1
SCFD1-221ENST00000556534 MFAP1P55081 439 aaKnown RBP8.2□□□□□ -1.1
SCFD1-221ENST00000556534 TRAPPC3LQ5T215 181 aa8.2□□□□□ -1.1
SCFD1-221ENST00000556534 PRPF40BQ6NWY9 871 aaKnown RBP8.2□□□□□ -1.1
SCFD1-221ENST00000556534 SH2B1Q9NRF2 756 aaPredicted RBP8.2□□□□□ -1.1
SCFD1-221ENST00000556534 DEAF1O75398 565 aaPredicted RBP8.19□□□□□ -1.1
SCFD1-221ENST00000556534 LDHBP07195 334 aaKnown RBP8.19□□□□□ -1.1
SCFD1-221ENST00000556534 ERCC3P19447 782 aa8.19□□□□□ -1.1
SCFD1-221ENST00000556534 GRIA4P48058 902 aa8.19□□□□□ -1.1
SCFD1-221ENST00000556534 ATP2B2Q01814 1243 aa8.19□□□□□ -1.1
SCFD1-221ENST00000556534 RASSF7Q02833 373 aa8.19□□□□□ -1.1
SCFD1-221ENST00000556534 GRM2Q14416 872 aa8.19□□□□□ -1.1
SCFD1-221ENST00000556534 FBXO33Q7Z6M2 555 aa8.19□□□□□ -1.1
SCFD1-221ENST00000556534 FMR1NBQ8N0W7 255 aaPredicted RBP8.19□□□□□ -1.1
SCFD1-221ENST00000556534 DTWD1Q8N5C7 304 aa8.19□□□□□ -1.1
SCFD1-221ENST00000556534 GLIS3Q8NEA6 775 aa8.19□□□□□ -1.1
SCFD1-221ENST00000556534 EHD4Q9H223 541 aa8.19□□□□□ -1.1
SCFD1-221ENST00000556534 ABCB6Q9NP58 842 aa8.19□□□□□ -1.1
SCFD1-221ENST00000556534 GADD45BO75293 160 aaPredicted RBP8.18□□□□□ -1.1
SCFD1-221ENST00000556534 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.18□□□□□ -1.1
SCFD1-221ENST00000556534 ALG1LQ6GMV1 187 aa8.18□□□□□ -1.1
SCFD1-221ENST00000556534 TXNDC11Q6PKC3 985 aa8.18□□□□□ -1.1
SCFD1-221ENST00000556534 ALYREFQ86V81 257 aaKnown RBP8.18□□□□□ -1.1
SCFD1-221ENST00000556534 BSNDQ8WZ55 320 aa8.18□□□□□ -1.1
SCFD1-221ENST00000556534 DCAF5Q96JK2 942 aa8.18□□□□□ -1.1
SCFD1-221ENST00000556534 H3BRJ5 948 aa8.17□□□□□ -1.1
SCFD1-221ENST00000556534 TM4SF5O14894 197 aa8.17□□□□□ -1.1
SCFD1-221ENST00000556534 SPATA31C1P0DKV0 1188 aa8.17□□□□□ -1.1
SCFD1-221ENST00000556534 RAC1P63000 192 aa8.17□□□□□ -1.1
SCFD1-221ENST00000556534 SETDB1Q15047 1291 aa8.17□□□□□ -1.1
SCFD1-221ENST00000556534 EAPPQ56P03 285 aaPredicted RBP8.17□□□□□ -1.1
SCFD1-221ENST00000556534 PRRT3Q5FWE3 981 aa8.17□□□□□ -1.1
SCFD1-221ENST00000556534 VN1R5Q7Z5H4 357 aa8.17□□□□□ -1.1
SCFD1-221ENST00000556534 ASAP3Q8TDY4 903 aa8.17□□□□□ -1.1
SCFD1-221ENST00000556534 MUC3BQ9H195 1237 aa8.17□□□□□ -1.1
SCFD1-221ENST00000556534 NLRP2Q9NX02 1062 aa8.17□□□□□ -1.1
SCFD1-221ENST00000556534 PPME1Q9Y570 386 aa8.17□□□□□ -1.1
SCFD1-221ENST00000556534 LINC01387J3KSC0 135 aa8.16□□□□□ -1.1
SCFD1-221ENST00000556534 PRPF40AO75400 957 aaKnown RBP8.16□□□□□ -1.1
SCFD1-221ENST00000556534 TRIM28Q13263 835 aaKnown RBP8.16□□□□□ -1.1
SCFD1-221ENST00000556534 SPRED3Q2MJR0 410 aa8.16□□□□□ -1.1
SCFD1-221ENST00000556534 SRA1Q9HD15 236 aaKnown RBP8.16□□□□□ -1.1
SCFD1-221ENST00000556534 A0A096LPE4 126 aa8.15□□□□□ -1.1
SCFD1-221ENST00000556534 A0A1W2PPZ6 126 aa8.15□□□□□ -1.1
SCFD1-221ENST00000556534 KRBA1A5PL33 1030 aa8.15□□□□□ -1.1
SCFD1-221ENST00000556534 ELNP15502 786 aa8.15□□□□□ -1.1
SCFD1-221ENST00000556534 ITPKAP23677 461 aa8.15□□□□□ -1.1
SCFD1-221ENST00000556534 FBXO11Q86XK2 927 aa8.15□□□□□ -1.1
SCFD1-221ENST00000556534 MAP4K3Q8IVH8 894 aa8.15□□□□□ -1.1
SCFD1-221ENST00000556534 BCO2Q9BYV7 579 aa8.15□□□□□ -1.1
SCFD1-221ENST00000556534 TRAK1Q9UPV9 953 aa8.15□□□□□ -1.1
SCFD1-221ENST00000556534 FAM177BA6PVY3 158 aa8.14□□□□□ -1.11
SCFD1-221ENST00000556534 CDC25BP30305 580 aa8.14□□□□□ -1.11
SCFD1-221ENST00000556534 GALNT11Q8NCW6 608 aa8.14□□□□□ -1.11
SCFD1-221ENST00000556534 ZNF576Q9H609 170 aa8.14□□□□□ -1.11
SCFD1-221ENST00000556534 RNF19AQ9NV58 838 aa8.14□□□□□ -1.11
SCFD1-221ENST00000556534 TMEM238LA0A1B0GVL6 79 aa8.13□□□□□ -1.11
SCFD1-221ENST00000556534 DLL1O00548 723 aa8.13□□□□□ -1.11
SCFD1-221ENST00000556534 FSCN2O14926 492 aa8.13□□□□□ -1.11
SCFD1-221ENST00000556534 GDF11O95390 407 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms