RNA–Protein interactions for RNA: ENST00000556342.1

SYNE2-221, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 5

Gene SYNE2, Length 572 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-221ENST00000556342 ISCA1Q9BUE6 129 aa13.98□□□□□ -0.17
SYNE2-221ENST00000556342 DBNDD1Q9H9R9 158 aa13.98□□□□□ -0.17
SYNE2-221ENST00000556342 NSFL1CQ9UNZ2 370 aaKnown RBP13.98□□□□□ -0.17
SYNE2-221ENST00000556342 RIMBP2O15034 1052 aa13.97□□□□□ -0.17
SYNE2-221ENST00000556342 HDGFL1Q5TGJ6 251 aa13.97□□□□□ -0.17
SYNE2-221ENST00000556342 KRT26Q7Z3Y9 468 aa13.97□□□□□ -0.17
SYNE2-221ENST00000556342 FAM89AQ96GI7 184 aa13.97□□□□□ -0.17
SYNE2-221ENST00000556342 POLLQ9UGP5 575 aa13.97□□□□□ -0.17
SYNE2-221ENST00000556342 C6orf229H3BNL8 230 aa13.96□□□□□ -0.17
SYNE2-221ENST00000556342 EGFRP00533 1210 aa13.96□□□□□ -0.17
SYNE2-221ENST00000556342 HOXB7P09629 217 aa13.96□□□□□ -0.17
SYNE2-221ENST00000556342 RPS12P25398 132 aaKnown RBP13.96□□□□□ -0.17
SYNE2-221ENST00000556342 GPSM2P81274 684 aa13.96□□□□□ -0.17
SYNE2-221ENST00000556342 RALBP1Q15311 655 aa13.96□□□□□ -0.17
SYNE2-221ENST00000556342 NEUROD2Q15784 382 aa13.96□□□□□ -0.17
SYNE2-221ENST00000556342 TBC1D10BQ4KMP7 808 aaPredicted RBP13.96□□□□□ -0.17
SYNE2-221ENST00000556342 ANKRD13DQ6ZTN6 518 aa13.96□□□□□ -0.17
SYNE2-221ENST00000556342 GBA2Q9HCG7 927 aaPredicted RBP13.96□□□□□ -0.17
SYNE2-221ENST00000556342 ZSWIM6Q9HCJ5 1215 aa13.96□□□□□ -0.17
SYNE2-221ENST00000556342 FAM155AB1AL88 458 aaPredicted RBP13.95□□□□□ -0.18
SYNE2-221ENST00000556342 ATP5J2-PTCD1G3V325 749 aa13.95□□□□□ -0.18
SYNE2-221ENST00000556342 ECE2O60344 883 aa13.95□□□□□ -0.18
SYNE2-221ENST00000556342 DGKZQ13574 1117 aa13.95□□□□□ -0.18
SYNE2-221ENST00000556342 CCDC146Q8IYE0 955 aa13.95□□□□□ -0.18
SYNE2-221ENST00000556342 CFAP44Q96MT7 982 aa13.95□□□□□ -0.18
SYNE2-221ENST00000556342 EYA3Q99504 573 aa13.95□□□□□ -0.18
SYNE2-221ENST00000556342 DBF4Q9UBU7 674 aaPredicted RBP13.95□□□□□ -0.18
SYNE2-221ENST00000556342 LAS1LQ9Y4W2 734 aaKnown RBP13.95□□□□□ -0.18
SYNE2-221ENST00000556342 TAF1P21675 1872 aa13.95□□□□□ -0.18
SYNE2-221ENST00000556342 RTL9Q8NET4 1388 aa13.95□□□□□ -0.18
SYNE2-221ENST00000556342 ADM5C9JUS6 153 aa13.94□□□□□ -0.18
SYNE2-221ENST00000556342 RTL5Q5HYW3 569 aaPredicted RBP13.94□□□□□ -0.18
SYNE2-221ENST00000556342 RBM26Q5T8P6 1007 aaKnown RBP13.94□□□□□ -0.18
SYNE2-221ENST00000556342 RGMBQ6NW40 437 aa13.94□□□□□ -0.18
SYNE2-221ENST00000556342 DDX60Q8IY21 1712 aaKnown RBP13.94□□□□□ -0.18
SYNE2-221ENST00000556342 C2orf69Q8N8R5 385 aa13.94□□□□□ -0.18
SYNE2-221ENST00000556342 TBC1D16Q8TBP0 767 aa13.94□□□□□ -0.18
SYNE2-221ENST00000556342 DCPSQ96C86 337 aaKnown RBP13.94□□□□□ -0.18
SYNE2-221ENST00000556342 GPHNQ9NQX3 736 aaPredicted RBP13.94□□□□□ -0.18
SYNE2-221ENST00000556342 KCNQ5Q9NR82 932 aa13.94□□□□□ -0.18
SYNE2-221ENST00000556342 COL4A1P02462 1669 aa13.94□□□□□ -0.18
SYNE2-221ENST00000556342 CASP8AP2Q9UKL3 1982 aa13.93□□□□□ -0.18
SYNE2-221ENST00000556342 IRS4O14654 1257 aaPredicted RBP13.93□□□□□ -0.18
SYNE2-221ENST00000556342 HOXB1P14653 301 aaPredicted RBP13.93□□□□□ -0.18
SYNE2-221ENST00000556342 RPS8P62241 208 aaKnown RBP13.93□□□□□ -0.18
SYNE2-221ENST00000556342 TRIM28Q13263 835 aaKnown RBP13.93□□□□□ -0.18
SYNE2-221ENST00000556342 KIF4BQ2VIQ3 1234 aa13.93□□□□□ -0.18
SYNE2-221ENST00000556342 CCDC102AQ96A19 550 aa13.93□□□□□ -0.18
SYNE2-221ENST00000556342 RUNDC1Q96C34 613 aa13.92□□□□□ -0.18
SYNE2-221ENST00000556342 HYPKQ9NX55 129 aa13.92□□□□□ -0.18
SYNE2-221ENST00000556342 SAGE1Q9NXZ1 904 aa13.92□□□□□ -0.18
SYNE2-221ENST00000556342 GGA3Q9NZ52 723 aa13.92□□□□□ -0.18
SYNE2-221ENST00000556342 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.92□□□□□ -0.18
SYNE2-221ENST00000556342 PCDH10Q9P2E7 1040 aa13.92□□□□□ -0.18
SYNE2-221ENST00000556342 VIL1P09327 827 aaKnown RBP13.91□□□□□ -0.18
SYNE2-221ENST00000556342 ZNF157P51786 506 aaPredicted RBP13.91□□□□□ -0.18
SYNE2-221ENST00000556342 FOXK1P85037 733 aa13.91□□□□□ -0.18
SYNE2-221ENST00000556342 KIF23Q02241 960 aaPredicted RBP13.91□□□□□ -0.18
SYNE2-221ENST00000556342 DUSP27Q5VZP5 1158 aa13.91□□□□□ -0.18
SYNE2-221ENST00000556342 SULF1Q8IWU6 871 aa13.91□□□□□ -0.18
SYNE2-221ENST00000556342 MARVELD3Q96A59 401 aa13.91□□□□□ -0.18
SYNE2-221ENST00000556342 ZC3H12CQ9C0D7 883 aaKnown RBP13.91□□□□□ -0.18
SYNE2-221ENST00000556342 PODXL2Q9NZ53 605 aa13.91□□□□□ -0.18
SYNE2-221ENST00000556342 ASTN2O75129 1339 aaPredicted RBP13.9□□□□□ -0.18
SYNE2-221ENST00000556342 MYBBP1AQ9BQG0 1328 aaKnown RBP13.9□□□□□ -0.18
SYNE2-221ENST00000556342 UFL1O94874 794 aa13.9□□□□□ -0.18
SYNE2-221ENST00000556342 ZBTB38Q8NAP3 1195 aaPredicted RBP13.9□□□□□ -0.18
SYNE2-221ENST00000556342 SEC31BQ9NQW1 1179 aa13.9□□□□□ -0.18
SYNE2-221ENST00000556342 SLC10A3P09131 477 aa13.89□□□□□ -0.19
SYNE2-221ENST00000556342 WDR43Q15061 677 aaKnown RBP eCLIP13.89□□□□□ -0.19
SYNE2-221ENST00000556342 RIC3Q7Z5B4 369 aa13.89□□□□□ -0.19
SYNE2-221ENST00000556342 CRISPLD2Q9H0B8 497 aa13.89□□□□□ -0.19
SYNE2-221ENST00000556342 MBIPQ9NS73 344 aa13.89□□□□□ -0.19
SYNE2-221ENST00000556342 RNF186Q9NXI6 227 aa13.89□□□□□ -0.19
SYNE2-221ENST00000556342 ANKIB1Q9P2G1 1089 aa13.89□□□□□ -0.19
SYNE2-221ENST00000556342 GGA1Q9UJY5 639 aa13.89□□□□□ -0.19
SYNE2-221ENST00000556342 ZNF609O15014 1411 aa13.89□□□□□ -0.19
SYNE2-221ENST00000556342 TRPA1O75762 1119 aa13.88□□□□□ -0.19
SYNE2-221ENST00000556342 HSP90B1P14625 803 aaKnown RBP13.88□□□□□ -0.19
SYNE2-221ENST00000556342 EMP3P54852 163 aa13.88□□□□□ -0.19
SYNE2-221ENST00000556342 ZNF280AP59817 542 aaPredicted RBP13.88□□□□□ -0.19
SYNE2-221ENST00000556342 RSBN1LQ6PCB5 846 aaPredicted RBP13.88□□□□□ -0.19
SYNE2-221ENST00000556342 AGBL3Q8NEM8 1001 aa13.88□□□□□ -0.19
SYNE2-221ENST00000556342 CDCA5Q96FF9 252 aa13.88□□□□□ -0.19
SYNE2-221ENST00000556342 SCN9AQ15858 1988 aa13.87□□□□□ -0.19
SYNE2-221ENST00000556342 CCDC152Q4G0S7 254 aa13.87□□□□□ -0.19
SYNE2-221ENST00000556342 ANGEL2Q5VTE6 544 aaKnown RBP13.87□□□□□ -0.19
SYNE2-221ENST00000556342 GPR153Q6NV75 609 aa13.87□□□□□ -0.19
SYNE2-221ENST00000556342 SPRYD3Q8NCJ5 442 aa13.87□□□□□ -0.19
SYNE2-221ENST00000556342 CSRNP1Q96S65 589 aa13.87□□□□□ -0.19
SYNE2-221ENST00000556342 PHAXQ9H814 394 aaKnown RBP13.87□□□□□ -0.19
SYNE2-221ENST00000556342 ADAMTS8Q9UP79 889 aa13.87□□□□□ -0.19
SYNE2-221ENST00000556342 TNRC18O15417 2968 aaPredicted RBP13.86□□□□□ -0.19
SYNE2-221ENST00000556342 PDE8AO60658 829 aa13.86□□□□□ -0.19
SYNE2-221ENST00000556342 PCCAP05165 728 aaPredicted RBP13.86□□□□□ -0.19
SYNE2-221ENST00000556342 SCARF1Q14162 830 aa13.86□□□□□ -0.19
SYNE2-221ENST00000556342 RASAL3Q86YV0 1011 aa13.86□□□□□ -0.19
SYNE2-221ENST00000556342 CCDC191Q8NCU4 936 aa13.86□□□□□ -0.19
SYNE2-221ENST00000556342 GMLQ99445 158 aa13.86□□□□□ -0.19
SYNE2-221ENST00000556342 MYD88Q99836 296 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms