RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 DDX19AQ9NUU7 478 aaKnown RBP17.31■□□□□ 0.36
CUX1-215ENST00000556210 HMGB1P09429 215 aaKnown RBP17.31■□□□□ 0.36
CUX1-215ENST00000556210 TMEM67Q5HYA8 995 aa17.31■□□□□ 0.36
CUX1-215ENST00000556210 IGSF3O75054 1194 aa17.3■□□□□ 0.36
CUX1-215ENST00000556210 ATP5JP18859 108 aa17.3■□□□□ 0.36
CUX1-215ENST00000556210 ITGA6P23229 1130 aa17.3■□□□□ 0.36
CUX1-215ENST00000556210 CCDC94Q9BW85 323 aaPredicted RBP17.3■□□□□ 0.36
CUX1-215ENST00000556210 NECTIN1Q15223 517 aa17.3■□□□□ 0.36
CUX1-215ENST00000556210 SPECC1Q5M775 1068 aa17.3■□□□□ 0.36
CUX1-215ENST00000556210 PHKBQ93100 1093 aa17.3■□□□□ 0.36
CUX1-215ENST00000556210 UBAC1Q9BSL1 405 aa17.3■□□□□ 0.36
CUX1-215ENST00000556210 NCOA3Q9Y6Q9 1424 aa17.3■□□□□ 0.36
CUX1-215ENST00000556210 B4E1Z4 1266 aa17.3■□□□□ 0.36
CUX1-215ENST00000556210 NCOA7Q8NI08 942 aa17.3■□□□□ 0.36
CUX1-215ENST00000556210 GOLGA8AA7E2F4 631 aa17.29■□□□□ 0.36
CUX1-215ENST00000556210 METAP2P50579 478 aaKnown RBP eCLIP17.29■□□□□ 0.36
CUX1-215ENST00000556210 SAMD1Q6SPF0 538 aaPredicted RBP17.29■□□□□ 0.36
CUX1-215ENST00000556210 CMTR1Q8N1G2 835 aaKnown RBP17.29■□□□□ 0.36
CUX1-215ENST00000556210 AOPEPQ8N6M6 819 aa17.29■□□□□ 0.36
CUX1-215ENST00000556210 IGHMBP2P38935 993 aaKnown RBP17.29■□□□□ 0.36
CUX1-215ENST00000556210 COL9A3Q14050 684 aaPredicted RBP17.29■□□□□ 0.36
CUX1-215ENST00000556210 CFAP100Q494V2 611 aa17.29■□□□□ 0.36
CUX1-215ENST00000556210 CCDC112Q8NEF3 446 aa17.29■□□□□ 0.36
CUX1-215ENST00000556210 CYP2E1P05181 493 aaPredicted RBP17.29■□□□□ 0.36
CUX1-215ENST00000556210 LRMPQ12912 555 aa17.29■□□□□ 0.36
CUX1-215ENST00000556210 CDC42BPGQ6DT37 1551 aa17.29■□□□□ 0.36
CUX1-215ENST00000556210 CLEC17AQ6ZS10 378 aa17.29■□□□□ 0.36
CUX1-215ENST00000556210 OLFM4Q6UX06 510 aa17.28■□□□□ 0.36
CUX1-215ENST00000556210 DZIP3Q86Y13 1208 aaKnown RBP17.28■□□□□ 0.36
CUX1-215ENST00000556210 SLC12A7Q9Y666 1083 aa17.28■□□□□ 0.36
CUX1-215ENST00000556210 hCG_1642624A0A1W2PR95 340 aa17.28■□□□□ 0.36
CUX1-215ENST00000556210 E7EWF7 191 aa17.28■□□□□ 0.36
CUX1-215ENST00000556210 LMOD1P29536 600 aaPredicted RBP17.28■□□□□ 0.36
CUX1-215ENST00000556210 TRIM22Q8IYM9 498 aa17.28■□□□□ 0.36
CUX1-215ENST00000556210 NACAP1Q9BZK3 213 aa17.28■□□□□ 0.36
CUX1-215ENST00000556210 MYRIPQ8NFW9 859 aa17.28■□□□□ 0.36
CUX1-215ENST00000556210 ALG1Q9BT22 464 aa17.28■□□□□ 0.36
CUX1-215ENST00000556210 TNNT1P13805 278 aa17.27■□□□□ 0.36
CUX1-215ENST00000556210 PDLIM2Q96JY6 352 aa17.27■□□□□ 0.36
CUX1-215ENST00000556210 A0A0G2JLW4 131 aa17.27■□□□□ 0.36
CUX1-215ENST00000556210 GPAA1O43292 621 aa17.27■□□□□ 0.36
CUX1-215ENST00000556210 HSPD1P10809 573 aaKnown RBP17.27■□□□□ 0.36
CUX1-215ENST00000556210 IARSP41252 1262 aaKnown RBP17.27■□□□□ 0.35
CUX1-215ENST00000556210 SCRN1Q12765 414 aa17.27■□□□□ 0.35
CUX1-215ENST00000556210 MAP3K12Q12852 859 aa17.27■□□□□ 0.35
CUX1-215ENST00000556210 ZSCAN25Q6NSZ9 544 aa17.27■□□□□ 0.35
CUX1-215ENST00000556210 MAGEB6Q8N7X4 407 aa17.27■□□□□ 0.35
CUX1-215ENST00000556210 SLC3A2P08195 630 aaKnown RBP17.26■□□□□ 0.35
CUX1-215ENST00000556210 ATP6V1AP38606 617 aa17.26■□□□□ 0.35
CUX1-215ENST00000556210 CBX8Q9HC52 389 aa17.26■□□□□ 0.35
CUX1-215ENST00000556210 USP28Q96RU2 1077 aa17.26■□□□□ 0.35
CUX1-215ENST00000556210 COPRSQ9NQ92 184 aa17.26■□□□□ 0.35
CUX1-215ENST00000556210 ADGRB2O60241 1585 aa17.26■□□□□ 0.35
CUX1-215ENST00000556210 PRDM1O75626 825 aa17.26■□□□□ 0.35
CUX1-215ENST00000556210 PTPN21Q16825 1174 aa17.26■□□□□ 0.35
CUX1-215ENST00000556210 KAZALD1Q96I82 304 aa17.26■□□□□ 0.35
CUX1-215ENST00000556210 NRBP1Q9UHY1 535 aa17.25■□□□□ 0.35
CUX1-215ENST00000556210 ADD1P35611 737 aaKnown RBP17.25■□□□□ 0.35
CUX1-215ENST00000556210 TMC6Q7Z403 805 aa17.25■□□□□ 0.35
CUX1-215ENST00000556210 TTC14Q96N46 770 aa17.25■□□□□ 0.35
CUX1-215ENST00000556210 TM6SF1Q9BZW5 370 aa17.25■□□□□ 0.35
CUX1-215ENST00000556210 ANO10Q9NW15 660 aa17.25■□□□□ 0.35
CUX1-215ENST00000556210 SLAIN2Q9P270 581 aa17.25■□□□□ 0.35
CUX1-215ENST00000556210 NIP7Q9Y221 180 aaKnown RBP eCLIP17.25■□□□□ 0.35
CUX1-215ENST00000556210 SMAP1Q8IYB5 467 aaPredicted RBP17.25■□□□□ 0.35
CUX1-215ENST00000556210 ZSCAN16Q9H4T2 348 aaPredicted RBP17.25■□□□□ 0.35
CUX1-215ENST00000556210 G3V3G9 751 aa17.25■□□□□ 0.35
CUX1-215ENST00000556210 DCAF8Q5TAQ9 597 aa17.25■□□□□ 0.35
CUX1-215ENST00000556210 CPLX3Q8WVH0 158 aa17.25■□□□□ 0.35
CUX1-215ENST00000556210 GTF3C6Q969F1 213 aa17.25■□□□□ 0.35
CUX1-215ENST00000556210 PCDH11XQ9BZA7 1347 aa17.24■□□□□ 0.35
CUX1-215ENST00000556210 PCDH11YQ9BZA8 1340 aa17.24■□□□□ 0.35
CUX1-215ENST00000556210 CCDC191Q8NCU4 936 aa17.24■□□□□ 0.35
CUX1-215ENST00000556210 CCDC34Q96HJ3 373 aa17.24■□□□□ 0.35
CUX1-215ENST00000556210 GREM2Q9H772 168 aa17.24■□□□□ 0.35
CUX1-215ENST00000556210 ARMT1Q9H993 441 aa17.24■□□□□ 0.35
CUX1-215ENST00000556210 INCENPQ9NQS7 918 aa17.24■□□□□ 0.35
CUX1-215ENST00000556210 MARCH6O60337 910 aa17.24■□□□□ 0.35
CUX1-215ENST00000556210 FGAP02671 866 aa17.24■□□□□ 0.35
CUX1-215ENST00000556210 CTDSPL2Q05D32 466 aa17.24■□□□□ 0.35
CUX1-215ENST00000556210 NBPF26B4DH59 902 aa17.23■□□□□ 0.35
CUX1-215ENST00000556210 NBPF14Q5TI25 921 aa17.23■□□□□ 0.35
CUX1-215ENST00000556210 NBPF10Q6P3W6 841 aaKnown RBP17.23■□□□□ 0.35
CUX1-215ENST00000556210 NBPF15Q8N660 670 aa17.23■□□□□ 0.35
CUX1-215ENST00000556210 HAUS7Q99871 368 aa17.23■□□□□ 0.35
CUX1-215ENST00000556210 OSBP2Q969R2 916 aa17.23■□□□□ 0.35
CUX1-215ENST00000556210 SLC4A4Q9Y6R1 1079 aa17.23■□□□□ 0.35
CUX1-215ENST00000556210 ZBTB43O43298 467 aa17.23■□□□□ 0.35
CUX1-215ENST00000556210 MBD4O95243 580 aa17.23■□□□□ 0.35
CUX1-215ENST00000556210 SLC5A1P13866 664 aa17.23■□□□□ 0.35
CUX1-215ENST00000556210 JMYQ8N9B5 988 aa17.23■□□□□ 0.35
CUX1-215ENST00000556210 CNNM3Q8NE01 707 aa17.22■□□□□ 0.35
CUX1-215ENST00000556210 SSH2Q76I76 1423 aa17.22■□□□□ 0.35
CUX1-215ENST00000556210 TOB2Q14106 344 aaPredicted RBP17.22■□□□□ 0.35
CUX1-215ENST00000556210 DHX8Q14562 1220 aaKnown RBP17.22■□□□□ 0.35
CUX1-215ENST00000556210 PCMTD1Q96MG8 357 aaPredicted RBP17.22■□□□□ 0.35
CUX1-215ENST00000556210 AIFM3Q96NN9 605 aa17.22■□□□□ 0.35
CUX1-215ENST00000556210 SPTLC2O15270 562 aa17.22■□□□□ 0.35
CUX1-215ENST00000556210 MFSD6Q6ZSS7 791 aa17.22■□□□□ 0.35
CUX1-215ENST00000556210 MRPS27Q92552 414 aaKnown RBP17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms