RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 MMP14P50281 582 aa25.82■■□□□ 1.72
CCDC88C-210ENST00000555995 CNTROBQ8N137 903 aa25.82■■□□□ 1.72
CCDC88C-210ENST00000555995 TAF5LO75529 589 aa25.81■■□□□ 1.72
CCDC88C-210ENST00000555995 UBE4AQ14139 1066 aa25.81■■□□□ 1.72
CCDC88C-210ENST00000555995 STRIP1Q5VSL9 837 aa25.81■■□□□ 1.72
CCDC88C-210ENST00000555995 HELBQ8NG08 1087 aaPredicted RBP25.81■■□□□ 1.72
CCDC88C-210ENST00000555995 KCNQ5Q9NR82 932 aa25.81■■□□□ 1.72
CCDC88C-210ENST00000555995 CREBZFQ9NS37 354 aa25.81■■□□□ 1.72
CCDC88C-210ENST00000555995 ZNF646O15015 1829 aaPredicted RBP25.81■■□□□ 1.72
CCDC88C-210ENST00000555995 ITGBL1O95965 494 aaPredicted RBP25.8■■□□□ 1.72
CCDC88C-210ENST00000555995 MAP1SQ66K74 1059 aaPredicted RBP25.8■■□□□ 1.72
CCDC88C-210ENST00000555995 FBXO3Q9UK99 471 aa25.8■■□□□ 1.72
CCDC88C-210ENST00000555995 TRPM7Q96QT4 1865 aa25.79■■□□□ 1.72
CCDC88C-210ENST00000555995 RIPOR2Q9Y4F9 1068 aa25.79■■□□□ 1.72
CCDC88C-210ENST00000555995 WTIPA6NIX2 430 aaPredicted RBP25.78■■□□□ 1.72
CCDC88C-210ENST00000555995 PLIN1O60240 522 aa25.78■■□□□ 1.72
CCDC88C-210ENST00000555995 METTL24Q5JXM2 366 aa25.78■■□□□ 1.72
CCDC88C-210ENST00000555995 TXNRD3Q86VQ6 643 aa25.78■■□□□ 1.72
CCDC88C-210ENST00000555995 FTSJ3Q8IY81 847 aaKnown RBP25.78■■□□□ 1.72
CCDC88C-210ENST00000555995 PGAP2Q9UHJ9 254 aa25.78■■□□□ 1.72
CCDC88C-210ENST00000555995 TRPM4Q8TD43 1214 aa25.77■■□□□ 1.72
CCDC88C-210ENST00000555995 FBXW7Q969H0 707 aa25.77■■□□□ 1.72
CCDC88C-210ENST00000555995 MEIS3Q99687 375 aa25.77■■□□□ 1.72
CCDC88C-210ENST00000555995 CD209Q9NNX6 404 aa25.77■■□□□ 1.72
CCDC88C-210ENST00000555995 LRRFIP2Q9Y608 721 aaKnown RBP25.77■■□□□ 1.72
CCDC88C-210ENST00000555995 IRS2Q9Y4H2 1338 aa25.77■■□□□ 1.72
CCDC88C-210ENST00000555995 USP17L8P0C7I0 530 aa25.76■■□□□ 1.71
CCDC88C-210ENST00000555995 KLRK1P26718 216 aa25.76■■□□□ 1.71
CCDC88C-210ENST00000555995 DACT2Q5SW24 774 aa25.76■■□□□ 1.71
CCDC88C-210ENST00000555995 PUS3Q9BZE2 481 aaKnown RBP25.76■■□□□ 1.71
CCDC88C-210ENST00000555995 TMEM88BA6NKF7 163 aa25.75■■□□□ 1.71
CCDC88C-210ENST00000555995 ZNF280AP59817 542 aaPredicted RBP25.75■■□□□ 1.71
CCDC88C-210ENST00000555995 KIF4BQ2VIQ3 1234 aa25.75■■□□□ 1.71
CCDC88C-210ENST00000555995 TTLL5Q6EMB2 1281 aa25.75■■□□□ 1.71
CCDC88C-210ENST00000555995 OGFOD1Q8N543 542 aa25.75■■□□□ 1.71
CCDC88C-210ENST00000555995 GMLQ99445 158 aa25.75■■□□□ 1.71
CCDC88C-210ENST00000555995 EYA2O00167 538 aa25.74■■□□□ 1.71
CCDC88C-210ENST00000555995 PDE8BO95263 885 aa25.74■■□□□ 1.71
CCDC88C-210ENST00000555995 IL1R1P14778 569 aa25.74■■□□□ 1.71
CCDC88C-210ENST00000555995 TBC1D10BQ4KMP7 808 aaPredicted RBP25.74■■□□□ 1.71
CCDC88C-210ENST00000555995 CLUAP1Q96AJ1 413 aa25.74■■□□□ 1.71
CCDC88C-210ENST00000555995 KLRG1Q96E93 195 aa25.74■■□□□ 1.71
CCDC88C-210ENST00000555995 CEP350Q5VT06 3117 aa25.73■■□□□ 1.71
CCDC88C-210ENST00000555995 CIAO1O76071 339 aa25.73■■□□□ 1.71
CCDC88C-210ENST00000555995 MS4A1P11836 297 aa25.73■■□□□ 1.71
CCDC88C-210ENST00000555995 RFX5P48382 616 aaPredicted RBP25.73■■□□□ 1.71
CCDC88C-210ENST00000555995 HIRAP54198 1017 aaPredicted RBP25.73■■□□□ 1.71
CCDC88C-210ENST00000555995 PTPN12Q05209 780 aaKnown RBP25.73■■□□□ 1.71
CCDC88C-210ENST00000555995 LRRC24Q50LG9 513 aa25.73■■□□□ 1.71
CCDC88C-210ENST00000555995 CDC37L1Q7L3B6 337 aa25.73■■□□□ 1.71
CCDC88C-210ENST00000555995 SAMD7Q7Z3H4 446 aa25.73■■□□□ 1.71
CCDC88C-210ENST00000555995 DZIP1LQ8IYY4 767 aaKnown RBP25.73■■□□□ 1.71
CCDC88C-210ENST00000555995 DNAJC5GQ8N7S2 189 aa25.73■■□□□ 1.71
CCDC88C-210ENST00000555995 SHTN1A0MZ66 631 aa25.72■■□□□ 1.71
CCDC88C-210ENST00000555995 SNAP23O00161 211 aa25.72■■□□□ 1.71
CCDC88C-210ENST00000555995 GNAI2P04899 355 aa25.72■■□□□ 1.71
CCDC88C-210ENST00000555995 GTF2IP78347 998 aa25.72■■□□□ 1.71
CCDC88C-210ENST00000555995 HDAC9Q9UKV0 1011 aa25.72■■□□□ 1.71
CCDC88C-210ENST00000555995 HIBADHP31937 336 aaKnown RBP25.71■■□□□ 1.71
CCDC88C-210ENST00000555995 FKBP1AP62942 108 aaKnown RBP25.71■■□□□ 1.71
CCDC88C-210ENST00000555995 HTRA3P83110 453 aa25.71■■□□□ 1.71
CCDC88C-210ENST00000555995 MTX1Q13505 466 aa25.71■■□□□ 1.71
CCDC88C-210ENST00000555995 PUM3Q15397 648 aaKnown RBP25.71■■□□□ 1.71
CCDC88C-210ENST00000555995 CAVIN4Q5BKX8 364 aa25.71■■□□□ 1.71
CCDC88C-210ENST00000555995 VGLL2Q8N8G2 317 aa25.71■■□□□ 1.71
CCDC88C-210ENST00000555995 KLHDC4Q8TBB5 520 aa25.71■■□□□ 1.71
CCDC88C-210ENST00000555995 DCPSQ96C86 337 aaKnown RBP25.71■■□□□ 1.71
CCDC88C-210ENST00000555995 MYOZ2Q9NPC6 264 aa25.71■■□□□ 1.71
CCDC88C-210ENST00000555995 ARAP2Q8WZ64 1704 aa25.71■■□□□ 1.71
CCDC88C-210ENST00000555995 IFIT1P09914 478 aaKnown RBP25.7■■□□□ 1.7
CCDC88C-210ENST00000555995 VPS37DQ86XT2 251 aa25.7■■□□□ 1.7
CCDC88C-210ENST00000555995 TMEM57Q8N5G2 664 aa25.7■■□□□ 1.7
CCDC88C-210ENST00000555995 RBM26Q5T8P6 1007 aaKnown RBP25.69■■□□□ 1.7
CCDC88C-210ENST00000555995 COPRSQ9NQ92 184 aa25.69■■□□□ 1.7
CCDC88C-210ENST00000555995 SASH1O94885 1247 aa25.68■■□□□ 1.7
CCDC88C-210ENST00000555995 IL15P40933 162 aaPredicted RBP25.68■■□□□ 1.7
CCDC88C-210ENST00000555995 PITPNM2Q9BZ72 1349 aa25.67■■□□□ 1.7
CCDC88C-210ENST00000555995 SRGAP3O43295 1099 aa25.67■■□□□ 1.7
CCDC88C-210ENST00000555995 SLC5A1P13866 664 aa25.67■■□□□ 1.7
CCDC88C-210ENST00000555995 ITPRIPQ8IWB1 547 aa25.67■■□□□ 1.7
CCDC88C-210ENST00000555995 FAM84BQ96KN1 310 aaPredicted RBP25.67■■□□□ 1.7
CCDC88C-210ENST00000555995 GLIS2Q9BZE0 524 aaPredicted RBP25.67■■□□□ 1.7
CCDC88C-210ENST00000555995 CEP126Q9P2H0 1117 aa25.67■■□□□ 1.7
CCDC88C-210ENST00000555995 TNNQ9UQP3 1299 aa25.67■■□□□ 1.7
CCDC88C-210ENST00000555995 MYH13Q9UKX3 1938 aa25.67■■□□□ 1.7
CCDC88C-210ENST00000555995 FAM205AQ6ZU69 1335 aa25.66■■□□□ 1.7
CCDC88C-210ENST00000555995 EGFRP00533 1210 aa25.66■■□□□ 1.7
CCDC88C-210ENST00000555995 KRT26Q7Z3Y9 468 aa25.66■■□□□ 1.7
CCDC88C-210ENST00000555995 SULF1Q8IWU6 871 aa25.66■■□□□ 1.7
CCDC88C-210ENST00000555995 TDRD7Q8NHU6 1098 aaKnown RBP25.66■■□□□ 1.7
CCDC88C-210ENST00000555995 LPIN2Q92539 896 aa25.66■■□□□ 1.7
CCDC88C-210ENST00000555995 GGA3Q9NZ52 723 aa25.66■■□□□ 1.7
CCDC88C-210ENST00000555995 CNTNAP1P78357 1384 aa25.66■■□□□ 1.7
CCDC88C-210ENST00000555995 POLR2AP24928 1970 aaKnown RBP25.65■■□□□ 1.7
CCDC88C-210ENST00000555995 GYG1P46976 350 aa25.65■■□□□ 1.7
CCDC88C-210ENST00000555995 ATG9AQ7Z3C6 839 aa25.65■■□□□ 1.7
CCDC88C-210ENST00000555995 JMYQ8N9B5 988 aa25.65■■□□□ 1.7
CCDC88C-210ENST00000555995 SIL1Q9H173 461 aa25.65■■□□□ 1.7
CCDC88C-210ENST00000555995 FGFR2P21802 821 aa25.64■■□□□ 1.7
CCDC88C-210ENST00000555995 FBXO33Q7Z6M2 555 aa25.64■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms