RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 TXNRD3Q86VQ6 643 aa12.43□□□□□ -0.42
SRP54-208ENST00000555557 CNTROBQ8N137 903 aa12.43□□□□□ -0.42
SRP54-208ENST00000555557 HAUS7Q99871 368 aa12.43□□□□□ -0.42
SRP54-208ENST00000555557 SGIP1Q9BQI5 828 aa12.43□□□□□ -0.42
SRP54-208ENST00000555557 ZNF804BA4D1E1 1349 aa12.42□□□□□ -0.42
SRP54-208ENST00000555557 DPEP1P16444 411 aa12.42□□□□□ -0.42
SRP54-208ENST00000555557 PTGER2P43116 358 aa12.42□□□□□ -0.42
SRP54-208ENST00000555557 MCAMP43121 646 aa12.42□□□□□ -0.42
SRP54-208ENST00000555557 STYK1Q6J9G0 422 aa12.42□□□□□ -0.42
SRP54-208ENST00000555557 SP8Q8IXZ3 490 aa12.42□□□□□ -0.42
SRP54-208ENST00000555557 KLHL34Q8N239 644 aa12.42□□□□□ -0.42
SRP54-208ENST00000555557 ANTXR1Q9H6X2 564 aa12.42□□□□□ -0.42
SRP54-208ENST00000555557 WWC3Q9ULE0 1092 aa12.42□□□□□ -0.42
SRP54-208ENST00000555557 IQSEC3Q9UPP2 1182 aaPredicted RBP12.42□□□□□ -0.42
SRP54-208ENST00000555557 ATP6V0A2Q9Y487 856 aa12.42□□□□□ -0.42
SRP54-208ENST00000555557 XDHP47989 1333 aa12.42□□□□□ -0.42
SRP54-208ENST00000555557 COL11A2P13942 1736 aaPredicted RBP12.42□□□□□ -0.42
SRP54-208ENST00000555557 GOLIM4O00461 696 aa12.41□□□□□ -0.42
SRP54-208ENST00000555557 PRPF40BQ6NWY9 871 aaKnown RBP12.41□□□□□ -0.42
SRP54-208ENST00000555557 EVI5LQ96CN4 794 aa12.41□□□□□ -0.42
SRP54-208ENST00000555557 FAM84BQ96KN1 310 aaPredicted RBP12.41□□□□□ -0.42
SRP54-208ENST00000555557 KCNA3P22001 575 aa12.41□□□□□ -0.42
SRP54-208ENST00000555557 ZAP70P43403 619 aa12.41□□□□□ -0.42
SRP54-208ENST00000555557 CNKSR1Q969H4 720 aa12.41□□□□□ -0.42
SRP54-208ENST00000555557 POLLQ9UGP5 575 aa12.41□□□□□ -0.42
SRP54-208ENST00000555557 UFL1O94874 794 aa12.4□□□□□ -0.42
SRP54-208ENST00000555557 CHGBP05060 677 aa12.4□□□□□ -0.42
SRP54-208ENST00000555557 CHMLP26374 656 aa12.4□□□□□ -0.42
SRP54-208ENST00000555557 ARID4AP29374 1257 aaPredicted RBP12.4□□□□□ -0.42
SRP54-208ENST00000555557 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.4□□□□□ -0.42
SRP54-208ENST00000555557 PAG1Q9NWQ8 432 aa12.4□□□□□ -0.42
SRP54-208ENST00000555557 GGA1Q9UJY5 639 aa12.4□□□□□ -0.42
SRP54-208ENST00000555557 LEMD3Q9Y2U8 911 aa12.4□□□□□ -0.42
SRP54-208ENST00000555557 MFAP1P55081 439 aaKnown RBP12.39□□□□□ -0.43
SRP54-208ENST00000555557 RASGRF1Q13972 1273 aa12.39□□□□□ -0.43
SRP54-208ENST00000555557 CAVIN4Q5BKX8 364 aa12.39□□□□□ -0.43
SRP54-208ENST00000555557 TMC4Q7Z404 712 aa12.39□□□□□ -0.43
SRP54-208ENST00000555557 VPS37DQ86XT2 251 aa12.39□□□□□ -0.43
SRP54-208ENST00000555557 TBC1D16Q8TBP0 767 aa12.39□□□□□ -0.43
SRP54-208ENST00000555557 FSD1Q9BTV5 496 aa12.39□□□□□ -0.43
SRP54-208ENST00000555557 PODXL2Q9NZ53 605 aa12.39□□□□□ -0.43
SRP54-208ENST00000555557 HMG20BQ9P0W2 317 aa12.39□□□□□ -0.43
SRP54-208ENST00000555557 C6orf229H3BNL8 230 aa12.39□□□□□ -0.43
SRP54-208ENST00000555557 UQCRFS1P1P0C7P4 283 aa12.39□□□□□ -0.43
SRP54-208ENST00000555557 ATP2B4P23634 1241 aa12.39□□□□□ -0.43
SRP54-208ENST00000555557 FBXO33Q7Z6M2 555 aa12.39□□□□□ -0.43
SRP54-208ENST00000555557 MPNDQ8N594 471 aa12.39□□□□□ -0.43
SRP54-208ENST00000555557 ZNF512BQ96KM6 892 aaPredicted RBP12.39□□□□□ -0.43
SRP54-208ENST00000555557 IL25Q9H293 177 aa12.39□□□□□ -0.43
SRP54-208ENST00000555557 IRS2Q9Y4H2 1338 aa12.38□□□□□ -0.43
SRP54-208ENST00000555557 C21orf2O43822 256 aa12.38□□□□□ -0.43
SRP54-208ENST00000555557 CYP2E1P05181 493 aaPredicted RBP12.38□□□□□ -0.43
SRP54-208ENST00000555557 HIBADHP31937 336 aaKnown RBP12.38□□□□□ -0.43
SRP54-208ENST00000555557 SLFNL1Q499Z3 407 aa12.38□□□□□ -0.43
SRP54-208ENST00000555557 CASC1Q6TDU7 716 aa12.38□□□□□ -0.43
SRP54-208ENST00000555557 CWC27Q6UX04 472 aaKnown RBP12.38□□□□□ -0.43
SRP54-208ENST00000555557 TTLL6Q8N841 843 aa12.38□□□□□ -0.43
SRP54-208ENST00000555557 SPATA5Q8NB90 893 aa12.38□□□□□ -0.43
SRP54-208ENST00000555557 C7orf43Q8WVR3 580 aa12.38□□□□□ -0.43
SRP54-208ENST00000555557 TMX4Q9H1E5 349 aaPredicted RBP12.38□□□□□ -0.43
SRP54-208ENST00000555557 A0A1B0GUL6 1792 aa12.37□□□□□ -0.43
SRP54-208ENST00000555557 RIMBP2O15034 1052 aa12.37□□□□□ -0.43
SRP54-208ENST00000555557 TGFB2P61812 414 aa12.37□□□□□ -0.43
SRP54-208ENST00000555557 DPP8Q6V1X1 898 aaPredicted RBP12.37□□□□□ -0.43
SRP54-208ENST00000555557 SLX4Q8IY92 1834 aa12.37□□□□□ -0.43
SRP54-208ENST00000555557 KBTBD3Q8NAB2 608 aa12.37□□□□□ -0.43
SRP54-208ENST00000555557 FAM227BQ96M60 508 aa12.37□□□□□ -0.43
SRP54-208ENST00000555557 SPON1Q9HCB6 807 aa12.37□□□□□ -0.43
SRP54-208ENST00000555557 PIH1D3Q9NQM4 214 aaKnown RBP12.37□□□□□ -0.43
SRP54-208ENST00000555557 JAG2Q9Y219 1238 aa12.37□□□□□ -0.43
SRP54-208ENST00000555557 RBM19Q9Y4C8 960 aaKnown RBP12.37□□□□□ -0.43
SRP54-208ENST00000555557 FRAT2O75474 233 aaPredicted RBP12.36□□□□□ -0.43
SRP54-208ENST00000555557 ESYT1Q9BSJ8 1104 aa12.36□□□□□ -0.43
SRP54-208ENST00000555557 DIAPH3Q9NSV4 1193 aa12.36□□□□□ -0.43
SRP54-208ENST00000555557 GNL3LQ9NVN8 582 aaKnown RBP12.36□□□□□ -0.43
SRP54-208ENST00000555557 UTRNP46939 3433 aa12.35□□□□□ -0.43
SRP54-208ENST00000555557 NMIQ13287 307 aaPredicted RBP12.35□□□□□ -0.43
SRP54-208ENST00000555557 PIM2Q9P1W9 311 aa12.35□□□□□ -0.43
SRP54-208ENST00000555557 CD2APQ9Y5K6 639 aa12.35□□□□□ -0.43
SRP54-208ENST00000555557 ARAP2Q8WZ64 1704 aa12.35□□□□□ -0.43
SRP54-208ENST00000555557 A0A0D9SFI3 127 aa12.35□□□□□ -0.43
SRP54-208ENST00000555557 CHAF1AQ13111 956 aaPredicted RBP12.35□□□□□ -0.43
SRP54-208ENST00000555557 C15orf52Q6ZUT6 534 aaKnown RBP12.35□□□□□ -0.43
SRP54-208ENST00000555557 NLGN2Q8NFZ4 835 aa12.35□□□□□ -0.43
SRP54-208ENST00000555557 CACNA1SQ13698 1873 aa12.35□□□□□ -0.43
SRP54-208ENST00000555557 COL1A1P02452 1464 aaPredicted RBP12.34□□□□□ -0.43
SRP54-208ENST00000555557 IDH1O75874 414 aaKnown RBP12.34□□□□□ -0.43
SRP54-208ENST00000555557 WASHC4Q2M389 1173 aa12.34□□□□□ -0.43
SRP54-208ENST00000555557 ZNF804AQ7Z570 1209 aa12.34□□□□□ -0.43
SRP54-208ENST00000555557 SEC62Q99442 399 aaKnown RBP12.34□□□□□ -0.43
SRP54-208ENST00000555557 ZC3H12CQ9C0D7 883 aaKnown RBP12.34□□□□□ -0.43
SRP54-208ENST00000555557 CD209Q9NNX6 404 aa12.34□□□□□ -0.43
SRP54-208ENST00000555557 DENND2AQ9ULE3 1009 aa12.34□□□□□ -0.43
SRP54-208ENST00000555557 LRRC37AA6NMS7 1700 aa12.34□□□□□ -0.43
SRP54-208ENST00000555557 AKAP11Q9UKA4 1901 aa12.34□□□□□ -0.43
SRP54-208ENST00000555557 SGSM2O43147 1006 aa12.33□□□□□ -0.44
SRP54-208ENST00000555557 TTF1Q15361 905 aaPredicted RBP12.33□□□□□ -0.44
SRP54-208ENST00000555557 DOK7Q18PE1 504 aa12.33□□□□□ -0.44
SRP54-208ENST00000555557 TDRD7Q8NHU6 1098 aaKnown RBP12.33□□□□□ -0.44
SRP54-208ENST00000555557 ABCF2Q9UG63 623 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms