RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 RNF43Q68DV7 783 aa8.24□□□□□ -1.09
SCFD1-216ENST00000555550 UBASH3BQ8TF42 649 aa8.24□□□□□ -1.09
SCFD1-216ENST00000555550 ACIN1Q9UKV3 1341 aaKnown RBP8.24□□□□□ -1.09
SCFD1-216ENST00000555550 PRR19A6NJB7 356 aa8.23□□□□□ -1.09
SCFD1-216ENST00000555550 ZAP70P43403 619 aa8.23□□□□□ -1.09
SCFD1-216ENST00000555550 FAM69CQ0P6D2 419 aa8.23□□□□□ -1.09
SCFD1-216ENST00000555550 SWI5Q1ZZU3 235 aa8.23□□□□□ -1.09
SCFD1-216ENST00000555550 FOXD4L4Q8WXT5 416 aaPredicted RBP8.23□□□□□ -1.09
SCFD1-216ENST00000555550 POP1Q99575 1024 aaKnown RBP8.23□□□□□ -1.09
SCFD1-216ENST00000555550 PBX4Q9BYU1 374 aa8.23□□□□□ -1.09
SCFD1-216ENST00000555550 FAM117BQ6P1L5 589 aa8.22□□□□□ -1.09
SCFD1-216ENST00000555550 NCAPG2Q86XI2 1143 aa8.22□□□□□ -1.09
SCFD1-216ENST00000555550 KLHL23Q8NBE8 558 aa8.22□□□□□ -1.09
SCFD1-216ENST00000555550 MYRFLQ96LU7 910 aa8.22□□□□□ -1.09
SCFD1-216ENST00000555550 ZMIZ1Q9ULJ6 1067 aa8.22□□□□□ -1.09
SCFD1-216ENST00000555550 FNDC3AQ9Y2H6 1198 aaKnown RBP8.22□□□□□ -1.09
SCFD1-216ENST00000555550 RNF114Q9Y508 228 aa8.22□□□□□ -1.09
SCFD1-216ENST00000555550 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.22□□□□□ -1.09
SCFD1-216ENST00000555550 BMP3P12645 472 aa8.21□□□□□ -1.1
SCFD1-216ENST00000555550 SPINK2P20155 84 aa8.21□□□□□ -1.1
SCFD1-216ENST00000555550 GRIK1P39086 918 aa8.21□□□□□ -1.1
SCFD1-216ENST00000555550 INTS5Q6P9B9 1019 aaKnown RBP8.21□□□□□ -1.1
SCFD1-216ENST00000555550 CEP120Q8N960 986 aa8.21□□□□□ -1.1
SCFD1-216ENST00000555550 STK32AQ8WU08 396 aa8.21□□□□□ -1.1
SCFD1-216ENST00000555550 DBNDD2Q9BQY9 259 aa8.21□□□□□ -1.1
SCFD1-216ENST00000555550 KCNF1Q9H3M0 494 aa8.21□□□□□ -1.1
SCFD1-216ENST00000555550 ABI2Q9NYB9 513 aaPredicted RBP8.21□□□□□ -1.1
SCFD1-216ENST00000555550 FAM13BQ9NYF5 915 aa8.21□□□□□ -1.1
SCFD1-216ENST00000555550 KIF4AO95239 1232 aa8.2□□□□□ -1.1
SCFD1-216ENST00000555550 UVSSAQ2YD98 709 aa8.2□□□□□ -1.1
SCFD1-216ENST00000555550 CLEC10AQ8IUN9 316 aa8.2□□□□□ -1.1
SCFD1-216ENST00000555550 FAM20CQ8IXL6 584 aa8.2□□□□□ -1.1
SCFD1-216ENST00000555550 SHKBP1Q8TBC3 707 aa8.2□□□□□ -1.1
SCFD1-216ENST00000555550 COL26A1Q96A83 441 aa8.2□□□□□ -1.1
SCFD1-216ENST00000555550 SEC31BQ9NQW1 1179 aa8.2□□□□□ -1.1
SCFD1-216ENST00000555550 SART1O43290 800 aaKnown RBP8.19□□□□□ -1.1
SCFD1-216ENST00000555550 BEND4Q6ZU67 534 aa8.19□□□□□ -1.1
SCFD1-216ENST00000555550 DTX1Q86Y01 620 aa8.19□□□□□ -1.1
SCFD1-216ENST00000555550 FAM83CQ9BQN1 747 aa8.19□□□□□ -1.1
SCFD1-216ENST00000555550 CXXC1Q9P0U4 656 aaPredicted RBP8.19□□□□□ -1.1
SCFD1-216ENST00000555550 TRPA1O75762 1119 aa8.18□□□□□ -1.1
SCFD1-216ENST00000555550 WNT11O96014 354 aa8.18□□□□□ -1.1
SCFD1-216ENST00000555550 YBX3P16989 372 aaKnown RBP eCLIP8.18□□□□□ -1.1
SCFD1-216ENST00000555550 PTPRAP18433 802 aa8.18□□□□□ -1.1
SCFD1-216ENST00000555550 PREPP48147 710 aa8.18□□□□□ -1.1
SCFD1-216ENST00000555550 NLRP12P59046 1061 aa8.18□□□□□ -1.1
SCFD1-216ENST00000555550 ADAM19Q9H013 955 aa8.18□□□□□ -1.1
SCFD1-216ENST00000555550 TMEM63CQ9P1W3 806 aa8.18□□□□□ -1.1
SCFD1-216ENST00000555550 CNTN3Q9P232 1028 aa8.18□□□□□ -1.1
SCFD1-216ENST00000555550 STIM2Q9P246 746 aa8.18□□□□□ -1.1
SCFD1-216ENST00000555550 KANSL3Q9P2N6 904 aa8.18□□□□□ -1.1
SCFD1-216ENST00000555550 FAM177BA6PVY3 158 aa8.17□□□□□ -1.1
SCFD1-216ENST00000555550 WDR64B1ANS9 1081 aa8.17□□□□□ -1.1
SCFD1-216ENST00000555550 ACPPP15309 386 aa8.17□□□□□ -1.1
SCFD1-216ENST00000555550 HOXA10P31260 410 aaPredicted RBP8.17□□□□□ -1.1
SCFD1-216ENST00000555550 ZMYND15Q9H091 742 aa8.17□□□□□ -1.1
SCFD1-216ENST00000555550 ELP3Q9H9T3 547 aa8.17□□□□□ -1.1
SCFD1-216ENST00000555550 HGSNATQ68CP4 663 aa8.16□□□□□ -1.1
SCFD1-216ENST00000555550 SLC7A3Q8WY07 619 aa8.16□□□□□ -1.1
SCFD1-216ENST00000555550 H3BRJ5 948 aa8.15□□□□□ -1.1
SCFD1-216ENST00000555550 ELOAQ14241 798 aaKnown RBP8.15□□□□□ -1.1
SCFD1-216ENST00000555550 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.15□□□□□ -1.1
SCFD1-216ENST00000555550 ATCAYQ86WG3 371 aa8.15□□□□□ -1.1
SCFD1-216ENST00000555550 NUDT16Q96DE0 195 aaKnown RBP8.15□□□□□ -1.1
SCFD1-216ENST00000555550 MFSD14AQ96MC6 490 aa8.15□□□□□ -1.1
SCFD1-216ENST00000555550 NFKBIEO00221 500 aa8.14□□□□□ -1.11
SCFD1-216ENST00000555550 CABP4P57796 275 aa8.14□□□□□ -1.11
SCFD1-216ENST00000555550 PIP4K2BP78356 416 aa8.14□□□□□ -1.11
SCFD1-216ENST00000555550 ANKRD34AQ69YU3 496 aa8.14□□□□□ -1.11
SCFD1-216ENST00000555550 HHIPQ96QV1 700 aa8.14□□□□□ -1.11
SCFD1-216ENST00000555550 RUSC1Q9BVN2 902 aa8.14□□□□□ -1.11
SCFD1-216ENST00000555550 RNF208Q9H0X6 261 aa8.14□□□□□ -1.11
SCFD1-216ENST00000555550 TMEM164Q5U3C3 297 aa8.13□□□□□ -1.11
SCFD1-216ENST00000555550 FDX2Q6P4F2 183 aa8.13□□□□□ -1.11
SCFD1-216ENST00000555550 ZNF438Q7Z4V0 828 aa8.13□□□□□ -1.11
SCFD1-216ENST00000555550 C1orf127Q8N9H9 656 aa8.13□□□□□ -1.11
SCFD1-216ENST00000555550 ADGRE2Q9UHX3 823 aa8.13□□□□□ -1.11
SCFD1-216ENST00000555550 SALL4Q9UJQ4 1053 aa8.13□□□□□ -1.11
SCFD1-216ENST00000555550 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.12□□□□□ -1.11
SCFD1-216ENST00000555550 PDE12Q6L8Q7 609 aaKnown RBP8.12□□□□□ -1.11
SCFD1-216ENST00000555550 FBXL6Q8N531 539 aa8.12□□□□□ -1.11
SCFD1-216ENST00000555550 OSGEPQ9NPF4 335 aa8.12□□□□□ -1.11
SCFD1-216ENST00000555550 DZANK1Q9NVP4 752 aa8.12□□□□□ -1.11
SCFD1-216ENST00000555550 SEPT3Q9UH03 358 aa8.12□□□□□ -1.11
SCFD1-216ENST00000555550 ARID1BQ8NFD5 2236 aaPredicted RBP8.12□□□□□ -1.11
SCFD1-216ENST00000555550 A6NHS1 94 aa8.11□□□□□ -1.11
SCFD1-216ENST00000555550 CES1P23141 567 aa8.11□□□□□ -1.11
SCFD1-216ENST00000555550 MAP4P27816 1152 aaKnown RBP8.11□□□□□ -1.11
SCFD1-216ENST00000555550 SRPK2P78362 688 aaKnown RBP8.11□□□□□ -1.11
SCFD1-216ENST00000555550 SGO2Q562F6 1265 aa8.11□□□□□ -1.11
SCFD1-216ENST00000555550 SHISA5Q8N114 240 aa8.11□□□□□ -1.11
SCFD1-216ENST00000555550 ABTB2Q8N961 1025 aa8.11□□□□□ -1.11
SCFD1-216ENST00000555550 WNT8BQ93098 351 aa8.11□□□□□ -1.11
SCFD1-216ENST00000555550 PDE2AO00408 941 aaPredicted RBP8.1□□□□□ -1.11
SCFD1-216ENST00000555550 GAS2O43903 313 aaKnown RBP8.1□□□□□ -1.11
SCFD1-216ENST00000555550 RXRBP28702 533 aa8.1□□□□□ -1.11
SCFD1-216ENST00000555550 C12orf50Q8NA57 414 aaPredicted RBP8.1□□□□□ -1.11
SCFD1-216ENST00000555550 GGNBP2Q9H3C7 697 aa8.1□□□□□ -1.11
SCFD1-216ENST00000555550 PIM2Q9P1W9 311 aa8.1□□□□□ -1.11
SCFD1-216ENST00000555550 SLAIN2Q9P270 581 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms