RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 XDHP47989 1333 aa12.6□□□□□ -0.39
SCFD1-215ENST00000555259 IGF2BP3O00425 579 aaKnown RBP eCLIP12.6□□□□□ -0.39
SCFD1-215ENST00000555259 SASH1O94885 1247 aa12.6□□□□□ -0.39
SCFD1-215ENST00000555259 DACT2Q5SW24 774 aa12.6□□□□□ -0.39
SCFD1-215ENST00000555259 CCER1Q8TC90 406 aaPredicted RBP12.6□□□□□ -0.39
SCFD1-215ENST00000555259 ERO1AQ96HE7 468 aa12.6□□□□□ -0.39
SCFD1-215ENST00000555259 MXD3Q9BW11 206 aa12.6□□□□□ -0.39
SCFD1-215ENST00000555259 ANGEL1Q9UNK9 670 aaKnown RBP12.6□□□□□ -0.39
SCFD1-215ENST00000555259 COL6A3P12111 3177 aa12.59□□□□□ -0.39
SCFD1-215ENST00000555259 ATP2B4P23634 1241 aa12.59□□□□□ -0.39
SCFD1-215ENST00000555259 RIPK4P57078 832 aa12.59□□□□□ -0.39
SCFD1-215ENST00000555259 ZBTB38Q8NAP3 1195 aaPredicted RBP12.59□□□□□ -0.39
SCFD1-215ENST00000555259 CD99L2Q8TCZ2 262 aa12.59□□□□□ -0.39
SCFD1-215ENST00000555259 FZD1Q9UP38 647 aa12.59□□□□□ -0.39
SCFD1-215ENST00000555259 MYO3BQ8WXR4 1341 aa12.58□□□□□ -0.4
SCFD1-215ENST00000555259 WTIPA6NIX2 430 aaPredicted RBP12.58□□□□□ -0.4
SCFD1-215ENST00000555259 ZBTB48P10074 688 aaPredicted RBP12.58□□□□□ -0.4
SCFD1-215ENST00000555259 CCDC152Q4G0S7 254 aa12.58□□□□□ -0.4
SCFD1-215ENST00000555259 HDGFL1Q5TGJ6 251 aa12.58□□□□□ -0.4
SCFD1-215ENST00000555259 APOBEC3FQ8IUX4 373 aaKnown RBP12.58□□□□□ -0.4
SCFD1-215ENST00000555259 SLC10A4Q96EP9 437 aa12.58□□□□□ -0.4
SCFD1-215ENST00000555259 EFCC1Q9HA90 598 aa12.58□□□□□ -0.4
SCFD1-215ENST00000555259 LAMA3Q16787 3333 aa12.58□□□□□ -0.4
SCFD1-215ENST00000555259 MED23Q9ULK4 1368 aa12.57□□□□□ -0.4
SCFD1-215ENST00000555259 HSP90B1P14625 803 aaKnown RBP12.57□□□□□ -0.4
SCFD1-215ENST00000555259 CRHR2Q13324 411 aa12.57□□□□□ -0.4
SCFD1-215ENST00000555259 CCDC85AQ96PX6 553 aaPredicted RBP12.57□□□□□ -0.4
SCFD1-215ENST00000555259 TMEM106CQ9BVX2 250 aa12.57□□□□□ -0.4
SCFD1-215ENST00000555259 DBF4Q9UBU7 674 aaPredicted RBP12.57□□□□□ -0.4
SCFD1-215ENST00000555259 ZNF646O15015 1829 aaPredicted RBP12.57□□□□□ -0.4
SCFD1-215ENST00000555259 MMP14P50281 582 aa12.56□□□□□ -0.4
SCFD1-215ENST00000555259 CAP1Q01518 475 aa12.56□□□□□ -0.4
SCFD1-215ENST00000555259 MAP3K11Q16584 847 aa12.56□□□□□ -0.4
SCFD1-215ENST00000555259 STRIP1Q5VSL9 837 aa12.56□□□□□ -0.4
SCFD1-215ENST00000555259 ANKRD18AQ8IVF6 992 aa12.56□□□□□ -0.4
SCFD1-215ENST00000555259 OTUD5Q96G74 571 aa12.56□□□□□ -0.4
SCFD1-215ENST00000555259 WNK4Q96J92 1243 aa12.56□□□□□ -0.4
SCFD1-215ENST00000555259 ZNF333Q96JL9 665 aa12.56□□□□□ -0.4
SCFD1-215ENST00000555259 CLMNQ96JQ2 1002 aa12.56□□□□□ -0.4
SCFD1-215ENST00000555259 H0YGN5 161 aa12.56□□□□□ -0.4
SCFD1-215ENST00000555259 CHL1O00533 1208 aa12.56□□□□□ -0.4
SCFD1-215ENST00000555259 LMOD3Q0VAK6 560 aa12.56□□□□□ -0.4
SCFD1-215ENST00000555259 FBXW7Q969H0 707 aa12.56□□□□□ -0.4
SCFD1-215ENST00000555259 HYPKQ9NX55 129 aa12.56□□□□□ -0.4
SCFD1-215ENST00000555259 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.56□□□□□ -0.4
SCFD1-215ENST00000555259 LAMB1P07942 1786 aa12.55□□□□□ -0.4
SCFD1-215ENST00000555259 PDE8AO60658 829 aa12.55□□□□□ -0.4
SCFD1-215ENST00000555259 HOXB7P09629 217 aa12.55□□□□□ -0.4
SCFD1-215ENST00000555259 TMPOP42166 694 aaKnown RBP12.55□□□□□ -0.4
SCFD1-215ENST00000555259 SP3Q02447 781 aa12.55□□□□□ -0.4
SCFD1-215ENST00000555259 ZBED3Q96IU2 234 aaPredicted RBP12.55□□□□□ -0.4
SCFD1-215ENST00000555259 DEFB129Q9H1M3 183 aa12.55□□□□□ -0.4
SCFD1-215ENST00000555259 COL1A1P02452 1464 aaPredicted RBP12.55□□□□□ -0.4
SCFD1-215ENST00000555259 SSC5DA1L4H1 1573 aa12.54□□□□□ -0.4
SCFD1-215ENST00000555259 DLL1O00548 723 aa12.54□□□□□ -0.4
SCFD1-215ENST00000555259 PCCAP05165 728 aaPredicted RBP12.54□□□□□ -0.4
SCFD1-215ENST00000555259 OTUD7BQ6GQQ9 843 aa12.54□□□□□ -0.4
SCFD1-215ENST00000555259 KIAA0825Q8IV33 1275 aa12.54□□□□□ -0.4
SCFD1-215ENST00000555259 COA1Q9GZY4 146 aa12.54□□□□□ -0.4
SCFD1-215ENST00000555259 UNCXA6NJT0 531 aa12.53□□□□□ -0.4
SCFD1-215ENST00000555259 PPP1R12BO60237 982 aaPredicted RBP12.53□□□□□ -0.4
SCFD1-215ENST00000555259 SLC9C1Q4G0N8 1177 aa12.53□□□□□ -0.4
SCFD1-215ENST00000555259 RIC3Q7Z5B4 369 aa12.53□□□□□ -0.4
SCFD1-215ENST00000555259 CCDC191Q8NCU4 936 aa12.53□□□□□ -0.4
SCFD1-215ENST00000555259 JARID2Q92833 1246 aaPredicted RBP12.53□□□□□ -0.4
SCFD1-215ENST00000555259 PTPN18Q99952 460 aa12.53□□□□□ -0.4
SCFD1-215ENST00000555259 MINPP1Q9UNW1 487 aa12.53□□□□□ -0.4
SCFD1-215ENST00000555259 GJA5P36382 358 aa12.52□□□□□ -0.4
SCFD1-215ENST00000555259 CCT4P50991 539 aaKnown RBP12.52□□□□□ -0.4
SCFD1-215ENST00000555259 GOLGA2Q08379 1002 aa12.52□□□□□ -0.4
SCFD1-215ENST00000555259 SLC4A8Q2Y0W8 1093 aa12.52□□□□□ -0.4
SCFD1-215ENST00000555259 TTLL5Q6EMB2 1281 aa12.52□□□□□ -0.4
SCFD1-215ENST00000555259 CHRDL2Q6WN34 429 aa12.52□□□□□ -0.4
SCFD1-215ENST00000555259 NBPF11Q86T75 865 aa12.52□□□□□ -0.4
SCFD1-215ENST00000555259 TXNRD3Q86VQ6 643 aa12.52□□□□□ -0.4
SCFD1-215ENST00000555259 CDC5LQ99459 802 aaKnown RBP12.52□□□□□ -0.4
SCFD1-215ENST00000555259 MYD88Q99836 296 aa12.52□□□□□ -0.4
SCFD1-215ENST00000555259 LAS1LQ9Y4W2 734 aaKnown RBP12.52□□□□□ -0.4
SCFD1-215ENST00000555259 PTCH2Q9Y6C5 1203 aa12.52□□□□□ -0.4
SCFD1-215ENST00000555259 TESPA1A2RU30 521 aaPredicted RBP12.52□□□□□ -0.41
SCFD1-215ENST00000555259 BSDC1Q9NW68 430 aaPredicted RBP12.52□□□□□ -0.41
SCFD1-215ENST00000555259 CWC25Q9NXE8 425 aaPredicted RBP12.52□□□□□ -0.41
SCFD1-215ENST00000555259 PPP2R3BQ9Y5P8 575 aa12.52□□□□□ -0.41
SCFD1-215ENST00000555259 RBM27Q9P2N5 1060 aaKnown RBP12.51□□□□□ -0.41
SCFD1-215ENST00000555259 CUL9Q8IWT3 2517 aa12.5□□□□□ -0.41
SCFD1-215ENST00000555259 MYCP01106 439 aaPredicted RBP12.5□□□□□ -0.41
SCFD1-215ENST00000555259 CTSWP56202 376 aa12.5□□□□□ -0.41
SCFD1-215ENST00000555259 GTF2IP78347 998 aa12.5□□□□□ -0.41
SCFD1-215ENST00000555259 MAPK8IP2Q13387 824 aaPredicted RBP12.5□□□□□ -0.41
SCFD1-215ENST00000555259 DLGAP5Q15398 846 aa12.5□□□□□ -0.41
SCFD1-215ENST00000555259 NEUROD2Q15784 382 aa12.5□□□□□ -0.41
SCFD1-215ENST00000555259 SUPT20HL1Q3ZLR7 823 aa12.5□□□□□ -0.41
SCFD1-215ENST00000555259 DUSP27Q5VZP5 1158 aa12.5□□□□□ -0.41
SCFD1-215ENST00000555259 SLC17A8Q8NDX2 589 aa12.5□□□□□ -0.41
SCFD1-215ENST00000555259 PHAXQ9H814 394 aaKnown RBP12.5□□□□□ -0.41
SCFD1-215ENST00000555259 KLRK1P26718 216 aa12.49□□□□□ -0.41
SCFD1-215ENST00000555259 IREB2P48200 963 aaKnown RBP12.49□□□□□ -0.41
SCFD1-215ENST00000555259 ARHGEF6Q15052 776 aa12.49□□□□□ -0.41
SCFD1-215ENST00000555259 ANKRD13AQ8IZ07 590 aa12.49□□□□□ -0.41
SCFD1-215ENST00000555259 MTMR14Q8NCE2 650 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms