RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 AKAP2Q9Y2D5 859 aa13.46□□□□□ -0.25
SHMT2-218ENST00000555213 IFIT1P09914 478 aaKnown RBP13.45□□□□□ -0.26
SHMT2-218ENST00000555213 PRELPP51888 382 aa13.45□□□□□ -0.26
SHMT2-218ENST00000555213 EIF6P56537 245 aaKnown RBP13.45□□□□□ -0.26
SHMT2-218ENST00000555213 ATP2B3Q16720 1220 aa13.45□□□□□ -0.26
SHMT2-218ENST00000555213 ZNF804AQ7Z570 1209 aa13.45□□□□□ -0.26
SHMT2-218ENST00000555213 VGLL2Q8N8G2 317 aa13.45□□□□□ -0.26
SHMT2-218ENST00000555213 GPR101Q96P66 508 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-218ENST00000555213 NOP58Q9Y2X3 529 aaKnown RBP13.45□□□□□ -0.26
SHMT2-218ENST00000555213 A0A1B0GUL6 1792 aa13.45□□□□□ -0.26
SHMT2-218ENST00000555213 CAVIN4Q5BKX8 364 aa13.44□□□□□ -0.26
SHMT2-218ENST00000555213 C15orf52Q6ZUT6 534 aaKnown RBP13.44□□□□□ -0.26
SHMT2-218ENST00000555213 VPS37DQ86XT2 251 aa13.44□□□□□ -0.26
SHMT2-218ENST00000555213 LPIN2Q92539 896 aa13.44□□□□□ -0.26
SHMT2-218ENST00000555213 COA1Q9GZY4 146 aa13.44□□□□□ -0.26
SHMT2-218ENST00000555213 ZNRF3Q9ULT6 936 aa13.44□□□□□ -0.26
SHMT2-218ENST00000555213 ECE2O60344 883 aa13.43□□□□□ -0.26
SHMT2-218ENST00000555213 SBF1O95248 1867 aa13.43□□□□□ -0.26
SHMT2-218ENST00000555213 TFCP2Q12800 502 aa13.43□□□□□ -0.26
SHMT2-218ENST00000555213 DPY19L2Q6NUT2 758 aa13.43□□□□□ -0.26
SHMT2-218ENST00000555213 DBNDD1Q9H9R9 158 aa13.43□□□□□ -0.26
SHMT2-218ENST00000555213 EXOC6BQ9Y2D4 811 aa13.43□□□□□ -0.26
SHMT2-218ENST00000555213 FZD9O00144 591 aa13.42□□□□□ -0.26
SHMT2-218ENST00000555213 RAB11FIP3O75154 756 aa13.42□□□□□ -0.26
SHMT2-218ENST00000555213 KLRK1P26718 216 aa13.42□□□□□ -0.26
SHMT2-218ENST00000555213 PDE4AP27815 886 aa13.42□□□□□ -0.26
SHMT2-218ENST00000555213 NUCB1Q02818 461 aa13.42□□□□□ -0.26
SHMT2-218ENST00000555213 DOK7Q18PE1 504 aa13.42□□□□□ -0.26
SHMT2-218ENST00000555213 PODNQ7Z5L7 613 aa13.42□□□□□ -0.26
SHMT2-218ENST00000555213 DICER1Q9UPY3 1922 aaKnown RBP13.41□□□□□ -0.26
SHMT2-218ENST00000555213 COL4A5P29400 1685 aa13.41□□□□□ -0.26
SHMT2-218ENST00000555213 ZNF609O15014 1411 aa13.41□□□□□ -0.26
SHMT2-218ENST00000555213 SNAP23O00161 211 aa13.41□□□□□ -0.26
SHMT2-218ENST00000555213 TNIP1Q15025 636 aa13.41□□□□□ -0.26
SHMT2-218ENST00000555213 GCC1Q96CN9 775 aa13.41□□□□□ -0.26
SHMT2-218ENST00000555213 KIF1BPQ96EK5 621 aa13.41□□□□□ -0.26
SHMT2-218ENST00000555213 ZNF541Q9H0D2 1346 aa13.4□□□□□ -0.26
SHMT2-218ENST00000555213 A0A1B0GUL7 405 aa13.4□□□□□ -0.26
SHMT2-218ENST00000555213 WTIPA6NIX2 430 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-218ENST00000555213 APBB1O00213 710 aa13.4□□□□□ -0.26
SHMT2-218ENST00000555213 FGFR2P21802 821 aa13.4□□□□□ -0.26
SHMT2-218ENST00000555213 HIBADHP31937 336 aaKnown RBP13.4□□□□□ -0.26
SHMT2-218ENST00000555213 GORABQ5T7V8 394 aa13.4□□□□□ -0.26
SHMT2-218ENST00000555213 CIAPIN1Q6FI81 312 aa13.4□□□□□ -0.26
SHMT2-218ENST00000555213 GPC2Q8N158 579 aa13.4□□□□□ -0.26
SHMT2-218ENST00000555213 GPR108Q9NPR9 543 aa13.4□□□□□ -0.26
SHMT2-218ENST00000555213 GNL3LQ9NVN8 582 aaKnown RBP13.4□□□□□ -0.26
SHMT2-218ENST00000555213 ZBTB47Q9UFB7 747 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-218ENST00000555213 IRS2Q9Y4H2 1338 aa13.39□□□□□ -0.27
SHMT2-218ENST00000555213 GLTPD2A6NH11 291 aa13.39□□□□□ -0.27
SHMT2-218ENST00000555213 FRAT2O75474 233 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-218ENST00000555213 RAD17O75943 681 aa13.39□□□□□ -0.27
SHMT2-218ENST00000555213 SASH1O94885 1247 aa13.39□□□□□ -0.27
SHMT2-218ENST00000555213 GYG1P46976 350 aa13.39□□□□□ -0.27
SHMT2-218ENST00000555213 TNNI3KQ59H18 835 aa13.39□□□□□ -0.27
SHMT2-218ENST00000555213 TXNRD3Q86VQ6 643 aa13.39□□□□□ -0.27
SHMT2-218ENST00000555213 CLASRPQ8N2M8 674 aaKnown RBP13.39□□□□□ -0.27
SHMT2-218ENST00000555213 RHPN1Q8TCX5 695 aa13.39□□□□□ -0.27
SHMT2-218ENST00000555213 FBXW7Q969H0 707 aa13.39□□□□□ -0.27
SHMT2-218ENST00000555213 NEUROD6Q96NK8 337 aa13.39□□□□□ -0.27
SHMT2-218ENST00000555213 LRRCC1Q9C099 1032 aa13.39□□□□□ -0.27
SHMT2-218ENST00000555213 CD209Q9NNX6 404 aa13.39□□□□□ -0.27
SHMT2-218ENST00000555213 GJA3Q9Y6H8 435 aa13.39□□□□□ -0.27
SHMT2-218ENST00000555213 FPGT-TNNI3KV9GXZ4 949 aa13.39□□□□□ -0.27
SHMT2-218ENST00000555213 CCDC88AQ3V6T2 1871 aa13.39□□□□□ -0.27
SHMT2-218ENST00000555213 GOLGB1Q14789 3259 aaKnown RBP13.39□□□□□ -0.27
SHMT2-218ENST00000555213 YDJCA8MPS7 323 aa13.38□□□□□ -0.27
SHMT2-218ENST00000555213 IL1R1P14778 569 aa13.38□□□□□ -0.27
SHMT2-218ENST00000555213 CXCL9Q07325 125 aa13.38□□□□□ -0.27
SHMT2-218ENST00000555213 CHD1LQ86WJ1 897 aa13.38□□□□□ -0.27
SHMT2-218ENST00000555213 FAM84BQ96KN1 310 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-218ENST00000555213 ARAP2Q8WZ64 1704 aa13.38□□□□□ -0.27
SHMT2-218ENST00000555213 IQCA1LA6NCM1 817 aa13.37□□□□□ -0.27
SHMT2-218ENST00000555213 USP17L3A6NCW0 530 aa13.37□□□□□ -0.27
SHMT2-218ENST00000555213 USP17L4A6NCW7 530 aa13.37□□□□□ -0.27
SHMT2-218ENST00000555213 LMOD1P29536 600 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-218ENST00000555213 ANKRD45Q5TZF3 282 aa13.37□□□□□ -0.27
SHMT2-218ENST00000555213 USP17L1Q7RTZ2 530 aa13.37□□□□□ -0.27
SHMT2-218ENST00000555213 FBXO33Q7Z6M2 555 aa13.37□□□□□ -0.27
SHMT2-218ENST00000555213 AACSQ86V21 672 aa13.37□□□□□ -0.27
SHMT2-218ENST00000555213 C16orf71Q8IYS4 520 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-218ENST00000555213 ZNF526Q8TF50 670 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-218ENST00000555213 XAGE2Q96GT9 111 aa13.37□□□□□ -0.27
SHMT2-218ENST00000555213 GPBP1L1Q9HC44 474 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-218ENST00000555213 MYO3BQ8WXR4 1341 aa13.37□□□□□ -0.27
SHMT2-218ENST00000555213 CEP350Q5VT06 3117 aa13.36□□□□□ -0.27
SHMT2-218ENST00000555213 PSMD14O00487 310 aa13.36□□□□□ -0.27
SHMT2-218ENST00000555213 SEMA3EO15041 775 aa13.36□□□□□ -0.27
SHMT2-218ENST00000555213 DDNO94850 711 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-218ENST00000555213 IFIT2P09913 472 aaKnown RBP13.36□□□□□ -0.27
SHMT2-218ENST00000555213 RPS12P25398 132 aaKnown RBP13.36□□□□□ -0.27
SHMT2-218ENST00000555213 BCAMP50895 628 aa13.36□□□□□ -0.27
SHMT2-218ENST00000555213 TIMM10P62072 90 aa13.36□□□□□ -0.27
SHMT2-218ENST00000555213 CCDC158Q5M9N0 1113 aa13.36□□□□□ -0.27
SHMT2-218ENST00000555213 STRIP1Q5VSL9 837 aa13.36□□□□□ -0.27
SHMT2-218ENST00000555213 L3MBTL3Q96JM7 780 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-218ENST00000555213 IL1RAPL2Q9NP60 686 aa13.36□□□□□ -0.27
SHMT2-218ENST00000555213 SMARCA5O60264 1052 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-218ENST00000555213 ADORA1P30542 326 aa13.35□□□□□ -0.27
SHMT2-218ENST00000555213 RGS3P49796 1198 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms