RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 CHD2O14647 1828 aaKnown RBP11.12□□□□□ -0.63
SYNE2-213ENST00000554805 ERBB3P21860 1342 aa11.11□□□□□ -0.63
SYNE2-213ENST00000554805 SMTNL1A8MU46 457 aa11.11□□□□□ -0.63
SYNE2-213ENST00000554805 BIN1O00499 593 aa11.11□□□□□ -0.63
SYNE2-213ENST00000554805 CEP135Q66GS9 1140 aa11.11□□□□□ -0.63
SYNE2-213ENST00000554805 NAA16Q6N069 864 aaPredicted RBP11.11□□□□□ -0.63
SYNE2-213ENST00000554805 GOLPH3LQ9H4A5 285 aa11.11□□□□□ -0.63
SYNE2-213ENST00000554805 HEG1Q9ULI3 1381 aa11.11□□□□□ -0.63
SYNE2-213ENST00000554805 A0A1B0GVL5 298 aa11.11□□□□□ -0.63
SYNE2-213ENST00000554805 E7EWF7 191 aa11.11□□□□□ -0.63
SYNE2-213ENST00000554805 HSP90AB3PQ58FF7 597 aa11.11□□□□□ -0.63
SYNE2-213ENST00000554805 NAT10Q9H0A0 1025 aaKnown RBP11.11□□□□□ -0.63
SYNE2-213ENST00000554805 RCOR1Q9UKL0 485 aa11.11□□□□□ -0.63
SYNE2-213ENST00000554805 CCDC69A6NI79 296 aa11.11□□□□□ -0.63
SYNE2-213ENST00000554805 NPHP1O15259 732 aa11.11□□□□□ -0.63
SYNE2-213ENST00000554805 PIP4K2BP78356 416 aa11.11□□□□□ -0.63
SYNE2-213ENST00000554805 PTPN14Q15678 1187 aa11.11□□□□□ -0.63
SYNE2-213ENST00000554805 C19orf44Q9H6X5 657 aa11.11□□□□□ -0.63
SYNE2-213ENST00000554805 GPHNQ9NQX3 736 aaPredicted RBP11.11□□□□□ -0.63
SYNE2-213ENST00000554805 CEP126Q9P2H0 1117 aa11.11□□□□□ -0.63
SYNE2-213ENST00000554805 TMEM94Q12767 1356 aa11.1□□□□□ -0.63
SYNE2-213ENST00000554805 KDM4FA0A1W2PPD8 638 aa11.1□□□□□ -0.63
SYNE2-213ENST00000554805 FAM160A1Q05DH4 1040 aa11.1□□□□□ -0.63
SYNE2-213ENST00000554805 NAA30Q147X3 362 aaPredicted RBP11.1□□□□□ -0.63
SYNE2-213ENST00000554805 SYNE3Q6ZMZ3 975 aa11.1□□□□□ -0.63
SYNE2-213ENST00000554805 C8orf76Q96K31 380 aa11.1□□□□□ -0.63
SYNE2-213ENST00000554805 HELLSQ9NRZ9 838 aa11.1□□□□□ -0.63
SYNE2-213ENST00000554805 CWC25Q9NXE8 425 aaPredicted RBP11.1□□□□□ -0.63
SYNE2-213ENST00000554805 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.1□□□□□ -0.63
SYNE2-213ENST00000554805 V9GYY5 206 aaPredicted RBP11.1□□□□□ -0.63
SYNE2-213ENST00000554805 RNF113AO15541 343 aaKnown RBP11.1□□□□□ -0.63
SYNE2-213ENST00000554805 IGSF3O75054 1194 aa11.1□□□□□ -0.63
SYNE2-213ENST00000554805 HSPD1P10809 573 aaKnown RBP11.1□□□□□ -0.63
SYNE2-213ENST00000554805 GNL2Q13823 731 aaKnown RBP11.1□□□□□ -0.63
SYNE2-213ENST00000554805 LRRC24Q50LG9 513 aa11.1□□□□□ -0.63
SYNE2-213ENST00000554805 TTC39AQ5SRH9 613 aa11.1□□□□□ -0.63
SYNE2-213ENST00000554805 RBM43Q6ZSC3 357 aaKnown RBP11.1□□□□□ -0.63
SYNE2-213ENST00000554805 PLBD2Q8NHP8 589 aa11.1□□□□□ -0.63
SYNE2-213ENST00000554805 ISM2Q6H9L7 571 aa11.1□□□□□ -0.63
SYNE2-213ENST00000554805 TTLL7Q6ZT98 887 aa11.1□□□□□ -0.63
SYNE2-213ENST00000554805 RALYLQ86SE5 291 aaKnown RBP11.1□□□□□ -0.63
SYNE2-213ENST00000554805 SMARCC2Q8TAQ2 1214 aa11.1□□□□□ -0.63
SYNE2-213ENST00000554805 MRPS27Q92552 414 aaKnown RBP11.1□□□□□ -0.63
SYNE2-213ENST00000554805 DCAF5Q96JK2 942 aa11.1□□□□□ -0.63
SYNE2-213ENST00000554805 CTDNEP1O95476 244 aa11.09□□□□□ -0.63
SYNE2-213ENST00000554805 PDIA3P30101 505 aaKnown RBP11.09□□□□□ -0.63
SYNE2-213ENST00000554805 IL15P40933 162 aaPredicted RBP11.09□□□□□ -0.63
SYNE2-213ENST00000554805 IQCB1Q15051 598 aa11.09□□□□□ -0.63
SYNE2-213ENST00000554805 LRRC8AQ8IWT6 810 aa11.09□□□□□ -0.63
SYNE2-213ENST00000554805 CHMP4CQ96CF2 233 aa11.09□□□□□ -0.63
SYNE2-213ENST00000554805 ORC3Q9UBD5 711 aaPredicted RBP11.09□□□□□ -0.63
SYNE2-213ENST00000554805 PAXBP1Q9Y5B6 917 aa11.09□□□□□ -0.63
SYNE2-213ENST00000554805 NFAT5O94916 1531 aa11.09□□□□□ -0.63
SYNE2-213ENST00000554805 A0A1B0GUL7 405 aa11.09□□□□□ -0.63
SYNE2-213ENST00000554805 CCDC158Q5M9N0 1113 aa11.09□□□□□ -0.63
SYNE2-213ENST00000554805 DSCC1Q9BVC3 393 aa11.09□□□□□ -0.63
SYNE2-213ENST00000554805 KLF18A0A0U1RQI7 1052 aa11.08□□□□□ -0.64
SYNE2-213ENST00000554805 GOLGA8BA8MQT2 603 aa11.08□□□□□ -0.64
SYNE2-213ENST00000554805 A1BGP04217 495 aa11.08□□□□□ -0.64
SYNE2-213ENST00000554805 TPM4P67936 248 aa11.08□□□□□ -0.64
SYNE2-213ENST00000554805 RABL6Q3YEC7 729 aaPredicted RBP11.08□□□□□ -0.64
SYNE2-213ENST00000554805 NRDCO43847 1150 aa11.08□□□□□ -0.64
SYNE2-213ENST00000554805 NEMFO60524 1076 aa11.08□□□□□ -0.64
SYNE2-213ENST00000554805 APPP05067 770 aa11.08□□□□□ -0.64
SYNE2-213ENST00000554805 IMMTQ16891 758 aaKnown RBP11.08□□□□□ -0.64
SYNE2-213ENST00000554805 ZMYM1Q5SVZ6 1142 aa11.08□□□□□ -0.64
SYNE2-213ENST00000554805 PUS3Q9BZE2 481 aaKnown RBP11.08□□□□□ -0.64
SYNE2-213ENST00000554805 PCDHA7Q9UN72 937 aa11.08□□□□□ -0.64
SYNE2-213ENST00000554805 MED1Q15648 1581 aaPredicted RBP11.08□□□□□ -0.64
SYNE2-213ENST00000554805 LTN1O94822 1766 aa11.08□□□□□ -0.64
SYNE2-213ENST00000554805 EYA2O00167 538 aa11.08□□□□□ -0.64
SYNE2-213ENST00000554805 CYP27B1O15528 508 aa11.08□□□□□ -0.64
SYNE2-213ENST00000554805 CCDC57Q2TAC2 916 aa11.08□□□□□ -0.64
SYNE2-213ENST00000554805 LRRFIP1Q32MZ4 808 aaKnown RBP11.08□□□□□ -0.64
SYNE2-213ENST00000554805 CTNNA3Q9UI47 895 aa11.08□□□□□ -0.64
SYNE2-213ENST00000554805 MAST3O60307 1309 aa11.08□□□□□ -0.64
SYNE2-213ENST00000554805 SH3TC1Q8TE82 1336 aa11.08□□□□□ -0.64
SYNE2-213ENST00000554805 USP27XA6NNY8 438 aa11.07□□□□□ -0.64
SYNE2-213ENST00000554805 ADD1P35611 737 aaKnown RBP11.07□□□□□ -0.64
SYNE2-213ENST00000554805 NCBP1Q09161 790 aaKnown RBP11.07□□□□□ -0.64
SYNE2-213ENST00000554805 TMC6Q7Z403 805 aa11.07□□□□□ -0.64
SYNE2-213ENST00000554805 MRFAP1L1Q96HT8 127 aa11.07□□□□□ -0.64
SYNE2-213ENST00000554805 M0R2C6 588 aa11.07□□□□□ -0.64
SYNE2-213ENST00000554805 PRC1O43663 620 aa11.07□□□□□ -0.64
SYNE2-213ENST00000554805 DHX16O60231 1041 aaKnown RBP11.07□□□□□ -0.64
SYNE2-213ENST00000554805 SLC3A2P08195 630 aaKnown RBP11.07□□□□□ -0.64
SYNE2-213ENST00000554805 EXOSC10Q01780 885 aaKnown RBP11.07□□□□□ -0.64
SYNE2-213ENST00000554805 GJB4Q9NTQ9 266 aa11.07□□□□□ -0.64
SYNE2-213ENST00000554805 CLIC4Q9Y696 253 aa11.07□□□□□ -0.64
SYNE2-213ENST00000554805 CDC25BP30305 580 aa11.06□□□□□ -0.64
SYNE2-213ENST00000554805 NDUFA8P51970 172 aa11.06□□□□□ -0.64
SYNE2-213ENST00000554805 ATG9AQ7Z3C6 839 aa11.06□□□□□ -0.64
SYNE2-213ENST00000554805 OSBP2Q969R2 916 aa11.06□□□□□ -0.64
SYNE2-213ENST00000554805 SYTL4Q96C24 671 aaPredicted RBP11.06□□□□□ -0.64
SYNE2-213ENST00000554805 ZNF274Q96GC6 653 aaPredicted RBP11.06□□□□□ -0.64
SYNE2-213ENST00000554805 SPTLC2O15270 562 aa11.06□□□□□ -0.64
SYNE2-213ENST00000554805 CTIFO43310 598 aaKnown RBP11.06□□□□□ -0.64
SYNE2-213ENST00000554805 MARCKSP29966 332 aaPredicted RBP11.06□□□□□ -0.64
SYNE2-213ENST00000554805 FOXO4P98177 505 aa11.06□□□□□ -0.64
SYNE2-213ENST00000554805 TRDNQ13061 729 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms