RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 MXD3Q9BW11 206 aa13.54□□□□□ -0.24
SHMT2-215ENST00000554656 KLRK1P26718 216 aa13.53□□□□□ -0.24
SHMT2-215ENST00000554656 CCT4P50991 539 aaKnown RBP13.53□□□□□ -0.24
SHMT2-215ENST00000554656 NOGQ13253 232 aa13.53□□□□□ -0.24
SHMT2-215ENST00000554656 FAM161AQ3B820 660 aa13.53□□□□□ -0.24
SHMT2-215ENST00000554656 NCBP3Q53F19 620 aaKnown RBP13.53□□□□□ -0.24
SHMT2-215ENST00000554656 CDCA5Q96FF9 252 aa13.53□□□□□ -0.24
SHMT2-215ENST00000554656 PLA2G12BQ9BX93 195 aa13.53□□□□□ -0.24
SHMT2-215ENST00000554656 SCAF8Q9UPN6 1271 aaKnown RBP13.53□□□□□ -0.24
SHMT2-215ENST00000554656 USP17L3A6NCW0 530 aa13.52□□□□□ -0.25
SHMT2-215ENST00000554656 USP17L4A6NCW7 530 aa13.52□□□□□ -0.25
SHMT2-215ENST00000554656 CA12O43570 354 aa13.52□□□□□ -0.25
SHMT2-215ENST00000554656 VAMP4O75379 141 aa13.52□□□□□ -0.25
SHMT2-215ENST00000554656 SCARF1Q14162 830 aa13.52□□□□□ -0.25
SHMT2-215ENST00000554656 DACT2Q5SW24 774 aa13.52□□□□□ -0.25
SHMT2-215ENST00000554656 ANGEL2Q5VTE6 544 aaKnown RBP13.52□□□□□ -0.25
SHMT2-215ENST00000554656 RGMBQ6NW40 437 aa13.52□□□□□ -0.25
SHMT2-215ENST00000554656 USP17L1Q7RTZ2 530 aa13.52□□□□□ -0.25
SHMT2-215ENST00000554656 PODNQ7Z5L7 613 aa13.52□□□□□ -0.25
SHMT2-215ENST00000554656 SULF1Q8IWU6 871 aa13.52□□□□□ -0.25
SHMT2-215ENST00000554656 DNAAF4Q8WXU2 420 aa13.52□□□□□ -0.25
SHMT2-215ENST00000554656 MYOZ2Q9NPC6 264 aa13.52□□□□□ -0.25
SHMT2-215ENST00000554656 SPINK5Q9NQ38 1064 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-215ENST00000554656 CSF1RP07333 972 aa13.51□□□□□ -0.25
SHMT2-215ENST00000554656 USP17L8P0C7I0 530 aa13.51□□□□□ -0.25
SHMT2-215ENST00000554656 ITGA6P23229 1130 aa13.51□□□□□ -0.25
SHMT2-215ENST00000554656 FKBP5Q13451 457 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-215ENST00000554656 C2orf69Q8N8R5 385 aa13.51□□□□□ -0.25
SHMT2-215ENST00000554656 SALL2Q9Y467 1007 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-215ENST00000554656 ECM29Q5VYK3 1845 aa13.5□□□□□ -0.25
SHMT2-215ENST00000554656 PITPNM2Q9BZ72 1349 aa13.5□□□□□ -0.25
SHMT2-215ENST00000554656 IRS2Q9Y4H2 1338 aa13.5□□□□□ -0.25
SHMT2-215ENST00000554656 SLC10A3P09131 477 aa13.5□□□□□ -0.25
SHMT2-215ENST00000554656 EXOSC9Q06265 439 aaKnown RBP13.5□□□□□ -0.25
SHMT2-215ENST00000554656 LINS1Q8NG48 757 aa13.5□□□□□ -0.25
SHMT2-215ENST00000554656 F6X3S4 739 aa13.49□□□□□ -0.25
SHMT2-215ENST00000554656 SNAP23O00161 211 aa13.49□□□□□ -0.25
SHMT2-215ENST00000554656 ZNF157P51786 506 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-215ENST00000554656 KIF23Q02241 960 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-215ENST00000554656 NBPF9Q3BBW0 867 aa13.49□□□□□ -0.25
SHMT2-215ENST00000554656 MOB2Q70IA6 237 aa13.49□□□□□ -0.25
SHMT2-215ENST00000554656 RASAL3Q86YV0 1011 aa13.49□□□□□ -0.25
SHMT2-215ENST00000554656 WDR63Q8IWG1 891 aa13.49□□□□□ -0.25
SHMT2-215ENST00000554656 ZNF804BA4D1E1 1349 aa13.48□□□□□ -0.25
SHMT2-215ENST00000554656 IGHMBP2P38935 993 aaKnown RBP13.48□□□□□ -0.25
SHMT2-215ENST00000554656 FOXO4P98177 505 aa13.48□□□□□ -0.25
SHMT2-215ENST00000554656 PRAMEF18Q5VWM3 479 aa13.48□□□□□ -0.25
SHMT2-215ENST00000554656 FAM9BQ8IZU0 186 aa13.48□□□□□ -0.25
SHMT2-215ENST00000554656 MCOLN1Q9GZU1 580 aa13.48□□□□□ -0.25
SHMT2-215ENST00000554656 COA1Q9GZY4 146 aa13.48□□□□□ -0.25
SHMT2-215ENST00000554656 MYH16Q9H6N6 1097 aa13.48□□□□□ -0.25
SHMT2-215ENST00000554656 LEMD3Q9Y2U8 911 aa13.48□□□□□ -0.25
SHMT2-215ENST00000554656 WNT10BO00744 389 aa13.47□□□□□ -0.25
SHMT2-215ENST00000554656 SASH1O94885 1247 aa13.47□□□□□ -0.25
SHMT2-215ENST00000554656 CHRNDQ07001 517 aa13.47□□□□□ -0.25
SHMT2-215ENST00000554656 EPHA10Q5JZY3 1008 aa13.47□□□□□ -0.25
SHMT2-215ENST00000554656 BEND3Q5T5X7 828 aa13.47□□□□□ -0.25
SHMT2-215ENST00000554656 STRIP1Q5VSL9 837 aa13.47□□□□□ -0.25
SHMT2-215ENST00000554656 FBXW7Q969H0 707 aa13.47□□□□□ -0.25
SHMT2-215ENST00000554656 CCDC102AQ96A19 550 aa13.47□□□□□ -0.25
SHMT2-215ENST00000554656 ZBED3Q96IU2 234 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-215ENST00000554656 CSRNP1Q96S65 589 aa13.46□□□□□ -0.25
SHMT2-215ENST00000554656 MPHOSPH8Q99549 860 aa13.46□□□□□ -0.25
SHMT2-215ENST00000554656 RNF186Q9NXI6 227 aa13.46□□□□□ -0.25
SHMT2-215ENST00000554656 SAGE1Q9NXZ1 904 aa13.46□□□□□ -0.25
SHMT2-215ENST00000554656 ARAP2Q8WZ64 1704 aa13.46□□□□□ -0.25
SHMT2-215ENST00000554656 LAMB1P07942 1786 aa13.45□□□□□ -0.26
SHMT2-215ENST00000554656 MYO3BQ8WXR4 1341 aa13.45□□□□□ -0.26
SHMT2-215ENST00000554656 CCDC85CA6NKD9 419 aa13.45□□□□□ -0.26
SHMT2-215ENST00000554656 UBE2Q2LH0YL09 131 aa13.45□□□□□ -0.26
SHMT2-215ENST00000554656 TTLL5Q6EMB2 1281 aa13.45□□□□□ -0.26
SHMT2-215ENST00000554656 CERS5Q8N5B7 392 aa13.45□□□□□ -0.26
SHMT2-215ENST00000554656 HELBQ8NG08 1087 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-215ENST00000554656 ANKRD2Q9GZV1 360 aa13.45□□□□□ -0.26
SHMT2-215ENST00000554656 ZBED9Q6R2W3 1325 aa13.44□□□□□ -0.26
SHMT2-215ENST00000554656 ANKRD18BA2A2Z9 1011 aa13.44□□□□□ -0.26
SHMT2-215ENST00000554656 TAF5LO75529 589 aa13.44□□□□□ -0.26
SHMT2-215ENST00000554656 TRPA1O75762 1119 aa13.44□□□□□ -0.26
SHMT2-215ENST00000554656 FKBP1BP68106 108 aa13.44□□□□□ -0.26
SHMT2-215ENST00000554656 GTF2IP78347 998 aa13.44□□□□□ -0.26
SHMT2-215ENST00000554656 HNRNPUQ00839 825 aaKnown RBP eCLIP13.44□□□□□ -0.26
SHMT2-215ENST00000554656 DGKZQ13574 1117 aa13.44□□□□□ -0.26
SHMT2-215ENST00000554656 KIAA0825Q8IV33 1275 aa13.44□□□□□ -0.26
SHMT2-215ENST00000554656 CD209Q9NNX6 404 aa13.44□□□□□ -0.26
SHMT2-215ENST00000554656 PCDHAC2Q9Y5I4 1007 aa13.44□□□□□ -0.26
SHMT2-215ENST00000554656 SSC5DA1L4H1 1573 aa13.44□□□□□ -0.26
SHMT2-215ENST00000554656 TNRC18O15417 2968 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-215ENST00000554656 LMBR1LQ6UX01 489 aa13.43□□□□□ -0.26
SHMT2-215ENST00000554656 C15orf52Q6ZUT6 534 aaKnown RBP13.43□□□□□ -0.26
SHMT2-215ENST00000554656 OGFOD1Q8N543 542 aa13.43□□□□□ -0.26
SHMT2-215ENST00000554656 ZNF594Q96JF6 807 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-215ENST00000554656 AOX1Q06278 1338 aa13.42□□□□□ -0.26
SHMT2-215ENST00000554656 ZNF521Q96K83 1311 aa13.42□□□□□ -0.26
SHMT2-215ENST00000554656 OTOFQ9HC10 1997 aa13.42□□□□□ -0.26
SHMT2-215ENST00000554656 GRM8O00222 908 aa13.42□□□□□ -0.26
SHMT2-215ENST00000554656 KCNJ4P48050 445 aa13.42□□□□□ -0.26
SHMT2-215ENST00000554656 RGS19P49795 217 aa13.42□□□□□ -0.26
SHMT2-215ENST00000554656 IFIT5Q13325 482 aaKnown RBP13.42□□□□□ -0.26
SHMT2-215ENST00000554656 CHMP3Q9Y3E7 222 aa13.42□□□□□ -0.26
SHMT2-215ENST00000554656 KAZALD1Q96I82 304 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms