RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 ZSCAN30Q86W11 494 aa13.92□□□□□ -0.18
SHMT2-212ENST00000554467 VGLL2Q8N8G2 317 aa13.92□□□□□ -0.18
SHMT2-212ENST00000554467 KCNB2Q92953 911 aa13.92□□□□□ -0.18
SHMT2-212ENST00000554467 MPHOSPH8Q99549 860 aa13.92□□□□□ -0.18
SHMT2-212ENST00000554467 AFF2P51816 1311 aa13.92□□□□□ -0.18
SHMT2-212ENST00000554467 GNPATO15228 680 aa13.92□□□□□ -0.18
SHMT2-212ENST00000554467 RNF113AO15541 343 aaKnown RBP13.92□□□□□ -0.18
SHMT2-212ENST00000554467 PDE8BO95263 885 aa13.92□□□□□ -0.18
SHMT2-212ENST00000554467 GDPD2Q9HCC8 539 aa13.92□□□□□ -0.18
SHMT2-212ENST00000554467 ZHX1Q9UKY1 873 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-212ENST00000554467 ST3GAL1Q11201 340 aa13.91□□□□□ -0.18
SHMT2-212ENST00000554467 ZMYM1Q5SVZ6 1142 aa13.91□□□□□ -0.18
SHMT2-212ENST00000554467 PRDM10Q9NQV6 1147 aa13.91□□□□□ -0.18
SHMT2-212ENST00000554467 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.91□□□□□ -0.18
SHMT2-212ENST00000554467 IQSEC3Q9UPP2 1182 aaPredicted RBP13.91□□□□□ -0.18
SHMT2-212ENST00000554467 MYH3P11055 1940 aa13.91□□□□□ -0.18
SHMT2-212ENST00000554467 HAND2P61296 217 aa13.91□□□□□ -0.18
SHMT2-212ENST00000554467 USPL1Q5W0Q7 1092 aa13.91□□□□□ -0.18
SHMT2-212ENST00000554467 STOX1Q6ZVD7 989 aa13.91□□□□□ -0.18
SHMT2-212ENST00000554467 CHST3Q7LGC8 479 aa13.91□□□□□ -0.18
SHMT2-212ENST00000554467 CERKQ8TCT0 537 aa13.91□□□□□ -0.18
SHMT2-212ENST00000554467 PPFIA3O75145 1194 aa13.9□□□□□ -0.18
SHMT2-212ENST00000554467 TBC1D9BQ66K14 1250 aa13.9□□□□□ -0.18
SHMT2-212ENST00000554467 CCNL1Q9UK58 526 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-212ENST00000554467 R3HCC1Q9Y3T6 440 aaKnown RBP13.9□□□□□ -0.18
SHMT2-212ENST00000554467 RPAP1Q9BWH6 1393 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-212ENST00000554467 IDH1O75874 414 aaKnown RBP13.9□□□□□ -0.18
SHMT2-212ENST00000554467 GTF2E1P29083 439 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-212ENST00000554467 INTS4Q96HW7 963 aaKnown RBP13.9□□□□□ -0.18
SHMT2-212ENST00000554467 PUS7LQ9H0K6 701 aaKnown RBP13.9□□□□□ -0.18
SHMT2-212ENST00000554467 HSPD1P10809 573 aaKnown RBP13.9□□□□□ -0.18
SHMT2-212ENST00000554467 RPS6KB1P23443 525 aa13.9□□□□□ -0.18
SHMT2-212ENST00000554467 CCDC102BQ68D86 513 aa13.9□□□□□ -0.18
SHMT2-212ENST00000554467 GJD4Q96KN9 370 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-212ENST00000554467 TM6SF1Q9BZW5 370 aa13.9□□□□□ -0.18
SHMT2-212ENST00000554467 SMC3Q9UQE7 1217 aa13.9□□□□□ -0.18
SHMT2-212ENST00000554467 BRD1O95696 1058 aa13.89□□□□□ -0.19
SHMT2-212ENST00000554467 PIH1D3Q9NQM4 214 aaKnown RBP13.89□□□□□ -0.19
SHMT2-212ENST00000554467 FBXO3Q9UK99 471 aa13.89□□□□□ -0.19
SHMT2-212ENST00000554467 COL4A1P02462 1669 aa13.89□□□□□ -0.19
SHMT2-212ENST00000554467 PSMA5P28066 241 aa13.89□□□□□ -0.19
SHMT2-212ENST00000554467 TERF1P54274 439 aa13.89□□□□□ -0.19
SHMT2-212ENST00000554467 TOB2Q14106 344 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-212ENST00000554467 SMAP1Q8IYB5 467 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-212ENST00000554467 CCDC173Q0VFZ6 552 aa13.89□□□□□ -0.19
SHMT2-212ENST00000554467 PARP10Q53GL7 1025 aa13.89□□□□□ -0.19
SHMT2-212ENST00000554467 CAVIN1Q6NZI2 390 aaKnown RBP13.89□□□□□ -0.19
SHMT2-212ENST00000554467 NEK1Q96PY6 1258 aa13.89□□□□□ -0.19
SHMT2-212ENST00000554467 U3KPZ7 1027 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-212ENST00000554467 TAF1P21675 1872 aa13.88□□□□□ -0.19
SHMT2-212ENST00000554467 GJB2P29033 226 aa13.88□□□□□ -0.19
SHMT2-212ENST00000554467 CCDC152Q4G0S7 254 aa13.88□□□□□ -0.19
SHMT2-212ENST00000554467 BCL2L12Q9HB09 334 aa13.88□□□□□ -0.19
SHMT2-212ENST00000554467 HELLSQ9NRZ9 838 aa13.88□□□□□ -0.19
SHMT2-212ENST00000554467 ZNF652Q9Y2D9 606 aa13.88□□□□□ -0.19
SHMT2-212ENST00000554467 BCAMP50895 628 aa13.88□□□□□ -0.19
SHMT2-212ENST00000554467 PUM3Q15397 648 aaKnown RBP13.88□□□□□ -0.19
SHMT2-212ENST00000554467 LMBRD1Q9NUN5 540 aa13.88□□□□□ -0.19
SHMT2-212ENST00000554467 SYT1P21579 422 aa13.87□□□□□ -0.19
SHMT2-212ENST00000554467 SLC9C2Q5TAH2 1124 aa13.87□□□□□ -0.19
SHMT2-212ENST00000554467 Q6ZUG5 572 aa13.87□□□□□ -0.19
SHMT2-212ENST00000554467 SLC51AQ86UW1 340 aa13.87□□□□□ -0.19
SHMT2-212ENST00000554467 SEPT12Q8IYM1 358 aa13.87□□□□□ -0.19
SHMT2-212ENST00000554467 NAP1L2Q9ULW6 460 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-212ENST00000554467 NSFL1CQ9UNZ2 370 aaKnown RBP13.87□□□□□ -0.19
SHMT2-212ENST00000554467 SPATA31A6Q5VVP1 1343 aa13.87□□□□□ -0.19
SHMT2-212ENST00000554467 AEBP2Q6ZN18 517 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-212ENST00000554467 RBM27Q9P2N5 1060 aaKnown RBP13.87□□□□□ -0.19
SHMT2-212ENST00000554467 HSP90B1P14625 803 aaKnown RBP13.87□□□□□ -0.19
SHMT2-212ENST00000554467 HMG20BQ9P0W2 317 aa13.87□□□□□ -0.19
SHMT2-212ENST00000554467 WWC3Q9ULE0 1092 aa13.87□□□□□ -0.19
SHMT2-212ENST00000554467 FOXP2O15409 715 aa13.86□□□□□ -0.19
SHMT2-212ENST00000554467 IGHMBP2P38935 993 aaKnown RBP13.86□□□□□ -0.19
SHMT2-212ENST00000554467 NASPP49321 788 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-212ENST00000554467 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-212ENST00000554467 CLEC17AQ6ZS10 378 aa13.86□□□□□ -0.19
SHMT2-212ENST00000554467 RFX7Q2KHR2 1363 aa13.86□□□□□ -0.19
SHMT2-212ENST00000554467 LPIN2Q92539 896 aa13.86□□□□□ -0.19
SHMT2-212ENST00000554467 BRF1Q92994 677 aa13.86□□□□□ -0.19
SHMT2-212ENST00000554467 SPEF2Q9C093 1822 aa13.86□□□□□ -0.19
SHMT2-212ENST00000554467 MYO5AQ9Y4I1 1855 aaKnown RBP13.86□□□□□ -0.19
SHMT2-212ENST00000554467 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-212ENST00000554467 MROH5Q6ZUA9 1318 aa13.86□□□□□ -0.19
SHMT2-212ENST00000554467 VPS37CA5D8V6 355 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-212ENST00000554467 CHRNDQ07001 517 aa13.86□□□□□ -0.19
SHMT2-212ENST00000554467 RASGRF1Q13972 1273 aa13.86□□□□□ -0.19
SHMT2-212ENST00000554467 GPHNQ9NQX3 736 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-212ENST00000554467 ABCC12Q96J65 1359 aa13.85□□□□□ -0.19
SHMT2-212ENST00000554467 UQCRHLA0A096LP55 91 aa13.85□□□□□ -0.19
SHMT2-212ENST00000554467 ZPR1O75312 459 aa13.85□□□□□ -0.19
SHMT2-212ENST00000554467 UQCRHP07919 91 aa13.85□□□□□ -0.19
SHMT2-212ENST00000554467 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.85□□□□□ -0.19
SHMT2-212ENST00000554467 ANP32BQ92688 251 aaKnown RBP13.85□□□□□ -0.19
SHMT2-212ENST00000554467 BTAF1O14981 1849 aa13.85□□□□□ -0.19
SHMT2-212ENST00000554467 GPAA1O43292 621 aa13.85□□□□□ -0.19
SHMT2-212ENST00000554467 STX6O43752 255 aa13.85□□□□□ -0.19
SHMT2-212ENST00000554467 FGFR2P21802 821 aa13.85□□□□□ -0.19
SHMT2-212ENST00000554467 FOSBP53539 338 aa13.85□□□□□ -0.19
SHMT2-212ENST00000554467 GPT2Q8TD30 523 aa13.85□□□□□ -0.19
SHMT2-212ENST00000554467 ARHGEF1Q92888 912 aaKnown RBP13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms