RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 ZKSCAN3Q9BRR0 538 aa8.88□□□□□ -0.99
SCFD1-211ENST00000554437 NPHS2Q9NP85 383 aa8.88□□□□□ -0.99
SCFD1-211ENST00000554437 PRDM6Q9NQX0 595 aa8.88□□□□□ -0.99
SCFD1-211ENST00000554437 MKL2Q9ULH7 1088 aa8.88□□□□□ -0.99
SCFD1-211ENST00000554437 CNTNAP5Q8WYK1 1306 aa8.87□□□□□ -0.99
SCFD1-211ENST00000554437 COL19A1Q14993 1142 aa8.87□□□□□ -0.99
SCFD1-211ENST00000554437 WWC3Q9ULE0 1092 aa8.87□□□□□ -0.99
SCFD1-211ENST00000554437 TRIM33Q9UPN9 1127 aa8.87□□□□□ -0.99
SCFD1-211ENST00000554437 A0A1W2PP55 124 aa8.86□□□□□ -0.99
SCFD1-211ENST00000554437 PDE2AO00408 941 aaPredicted RBP8.86□□□□□ -0.99
SCFD1-211ENST00000554437 GADD45BO75293 160 aaPredicted RBP8.86□□□□□ -0.99
SCFD1-211ENST00000554437 LDHBP07195 334 aaKnown RBP8.86□□□□□ -0.99
SCFD1-211ENST00000554437 IRS1P35568 1242 aa8.86□□□□□ -0.99
SCFD1-211ENST00000554437 LINC00114Q6XXX2 140 aa8.86□□□□□ -0.99
SCFD1-211ENST00000554437 EPS8L3Q8TE67 593 aaKnown RBP8.86□□□□□ -0.99
SCFD1-211ENST00000554437 SCARF2Q96GP6 870 aaPredicted RBP8.86□□□□□ -0.99
SCFD1-211ENST00000554437 HHIPQ96QV1 700 aa8.86□□□□□ -0.99
SCFD1-211ENST00000554437 SETDB2Q96T68 719 aa8.86□□□□□ -0.99
SCFD1-211ENST00000554437 NLRP2Q9NX02 1062 aa8.86□□□□□ -0.99
SCFD1-211ENST00000554437 NFKBIEO00221 500 aa8.85□□□□□ -0.99
SCFD1-211ENST00000554437 PIK3R2O00459 728 aa8.85□□□□□ -0.99
SCFD1-211ENST00000554437 GNB5O14775 395 aa8.85□□□□□ -0.99
SCFD1-211ENST00000554437 GRIK5Q16478 980 aa8.85□□□□□ -0.99
SCFD1-211ENST00000554437 ALG1LQ6GMV1 187 aa8.85□□□□□ -0.99
SCFD1-211ENST00000554437 POP1Q99575 1024 aaKnown RBP8.85□□□□□ -0.99
SCFD1-211ENST00000554437 LACRTQ9GZZ8 138 aa8.85□□□□□ -0.99
SCFD1-211ENST00000554437 EHD4Q9H223 541 aa8.85□□□□□ -0.99
SCFD1-211ENST00000554437 PODXL2Q9NZ53 605 aa8.85□□□□□ -0.99
SCFD1-211ENST00000554437 CCDC9Q9Y3X0 531 aaKnown RBP8.85□□□□□ -0.99
SCFD1-211ENST00000554437 NID1P14543 1247 aa8.84□□□□□ -0.99
SCFD1-211ENST00000554437 COL9A3Q14050 684 aaPredicted RBP8.84□□□□□ -0.99
SCFD1-211ENST00000554437 KIAA0319Q5VV43 1072 aa8.84□□□□□ -0.99
SCFD1-211ENST00000554437 PI16Q6UXB8 463 aa8.84□□□□□ -0.99
SCFD1-211ENST00000554437 WFDC8Q8IUA0 241 aa8.84□□□□□ -0.99
SCFD1-211ENST00000554437 TMEM102Q8N9M5 508 aaPredicted RBP8.84□□□□□ -0.99
SCFD1-211ENST00000554437 NXPE3Q969Y0 559 aa8.84□□□□□ -0.99
SCFD1-211ENST00000554437 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.83□□□□□ -1
SCFD1-211ENST00000554437 PTPRAP18433 802 aa8.83□□□□□ -1
SCFD1-211ENST00000554437 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.83□□□□□ -1
SCFD1-211ENST00000554437 TRAPPC3LQ5T215 181 aa8.83□□□□□ -1
SCFD1-211ENST00000554437 MSL1Q68DK7 614 aa8.83□□□□□ -1
SCFD1-211ENST00000554437 IL22RA1Q8N6P7 574 aa8.83□□□□□ -1
SCFD1-211ENST00000554437 ASAP3Q8TDY4 903 aa8.83□□□□□ -1
SCFD1-211ENST00000554437 FBF1Q8TES7 1133 aa8.83□□□□□ -1
SCFD1-211ENST00000554437 TRIM11Q96F44 468 aa8.83□□□□□ -1
SCFD1-211ENST00000554437 PLVAPQ9BX97 442 aa8.83□□□□□ -1
SCFD1-211ENST00000554437 LIN7BQ9HAP6 207 aa8.83□□□□□ -1
SCFD1-211ENST00000554437 FAM177BA6PVY3 158 aa8.82□□□□□ -1
SCFD1-211ENST00000554437 CDC27P30260 824 aa8.82□□□□□ -1
SCFD1-211ENST00000554437 DMRTC2Q8IXT2 367 aaPredicted RBP8.82□□□□□ -1
SCFD1-211ENST00000554437 CACTIN-AS1Q8N1I8 211 aa8.82□□□□□ -1
SCFD1-211ENST00000554437 PRPF40AO75400 957 aaKnown RBP8.81□□□□□ -1
SCFD1-211ENST00000554437 FGD1P98174 961 aa8.81□□□□□ -1
SCFD1-211ENST00000554437 ADAMTSL4Q6UY14 1074 aa8.81□□□□□ -1
SCFD1-211ENST00000554437 CCNJLQ8IV13 435 aa8.81□□□□□ -1
SCFD1-211ENST00000554437 BCL2L13Q9BXK5 485 aa8.81□□□□□ -1
SCFD1-211ENST00000554437 BHLHE41Q9C0J9 482 aaPredicted RBP8.81□□□□□ -1
SCFD1-211ENST00000554437 SUV39H2Q9H5I1 410 aa8.81□□□□□ -1
SCFD1-211ENST00000554437 SPDYE3A6NKU9 549 aa8.8□□□□□ -1
SCFD1-211ENST00000554437 METTL12A8MUP2 240 aa8.8□□□□□ -1
SCFD1-211ENST00000554437 CDC25BP30305 580 aa8.8□□□□□ -1
SCFD1-211ENST00000554437 GRM2Q14416 872 aa8.8□□□□□ -1
SCFD1-211ENST00000554437 FBXO33Q7Z6M2 555 aa8.8□□□□□ -1
SCFD1-211ENST00000554437 TCF12Q99081 682 aa8.8□□□□□ -1
SCFD1-211ENST00000554437 KRTAP9-2Q9BYQ4 174 aa8.8□□□□□ -1
SCFD1-211ENST00000554437 ADAM19Q9H013 955 aa8.8□□□□□ -1
SCFD1-211ENST00000554437 SH2B1Q9NRF2 756 aaPredicted RBP8.8□□□□□ -1
SCFD1-211ENST00000554437 PPP4R2Q9NY27 417 aa8.8□□□□□ -1
SCFD1-211ENST00000554437 NOP53Q9NZM5 478 aaKnown RBP8.8□□□□□ -1
SCFD1-211ENST00000554437 TRAK1Q9UPV9 953 aa8.8□□□□□ -1
SCFD1-211ENST00000554437 PPME1Q9Y570 386 aa8.8□□□□□ -1
SCFD1-211ENST00000554437 ADAM23O75077 832 aa8.79□□□□□ -1
SCFD1-211ENST00000554437 BAG6P46379 1132 aa8.79□□□□□ -1
SCFD1-211ENST00000554437 BSNDQ8WZ55 320 aa8.79□□□□□ -1
SCFD1-211ENST00000554437 DUSP9Q99956 384 aaKnown RBP8.79□□□□□ -1
SCFD1-211ENST00000554437 BCO2Q9BYV7 579 aa8.79□□□□□ -1
SCFD1-211ENST00000554437 MUC3BQ9H195 1237 aa8.79□□□□□ -1
SCFD1-211ENST00000554437 SPG7Q9UQ90 795 aa8.79□□□□□ -1
SCFD1-211ENST00000554437 GRIA4P48058 902 aa8.78□□□□□ -1
SCFD1-211ENST00000554437 CABP4P57796 275 aa8.78□□□□□ -1
SCFD1-211ENST00000554437 TAGLNQ01995 201 aaKnown RBP8.78□□□□□ -1
SCFD1-211ENST00000554437 SPRED3Q2MJR0 410 aa8.78□□□□□ -1
SCFD1-211ENST00000554437 GIPC2Q8TF65 315 aa8.78□□□□□ -1
SCFD1-211ENST00000554437 A0A096LPE4 126 aa8.77□□□□□ -1.01
SCFD1-211ENST00000554437 KRTAP9-6A0A140TA67 174 aa8.77□□□□□ -1.01
SCFD1-211ENST00000554437 A0A1W2PPZ6 126 aa8.77□□□□□ -1.01
SCFD1-211ENST00000554437 LINC01387J3KSC0 135 aa8.77□□□□□ -1.01
SCFD1-211ENST00000554437 EPHA1P21709 976 aa8.77□□□□□ -1.01
SCFD1-211ENST00000554437 RAC1P63000 192 aa8.77□□□□□ -1.01
SCFD1-211ENST00000554437 TRIM28Q13263 835 aaKnown RBP8.77□□□□□ -1.01
SCFD1-211ENST00000554437 NXPE4Q6UWF7 544 aa8.77□□□□□ -1.01
SCFD1-211ENST00000554437 SOX13Q9UN79 622 aa8.77□□□□□ -1.01
SCFD1-211ENST00000554437 A0A0A0MRY4 1105 aa8.76□□□□□ -1.01
SCFD1-211ENST00000554437 TMEM238LA0A1B0GVL6 79 aa8.76□□□□□ -1.01
SCFD1-211ENST00000554437 FAM229AH3BQW9 127 aa8.76□□□□□ -1.01
SCFD1-211ENST00000554437 XPCQ01831 940 aaPredicted RBP8.76□□□□□ -1.01
SCFD1-211ENST00000554437 ZNF326Q5BKZ1 582 aaKnown RBP8.76□□□□□ -1.01
SCFD1-211ENST00000554437 PRRT3Q5FWE3 981 aa8.76□□□□□ -1.01
SCFD1-211ENST00000554437 PRPF40BQ6NWY9 871 aaKnown RBP8.76□□□□□ -1.01
SCFD1-211ENST00000554437 FAM117BQ6P1L5 589 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms