RNA–Protein interactions for RNA: ENST00000554264.5

VPS33B-203, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-203ENST00000554264 OCLNQ16625 522 aa8.01□□□□□ -1.13
VPS33B-203ENST00000554264 SLC16A10Q8TF71 515 aa8.01□□□□□ -1.13
VPS33B-203ENST00000554264 ZNF232Q9UNY5 417 aa8.01□□□□□ -1.13
VPS33B-203ENST00000554264 NEXMIFQ5QGS0 1516 aa8.01□□□□□ -1.13
VPS33B-203ENST00000554264 SPHKAPQ2M3C7 1700 aa8□□□□□ -1.13
VPS33B-203ENST00000554264 LRPPRCP42704 1394 aaKnown RBP8□□□□□ -1.13
VPS33B-203ENST00000554264 PRMT3O60678 531 aa8□□□□□ -1.13
VPS33B-203ENST00000554264 IGFBP4P22692 258 aa8□□□□□ -1.13
VPS33B-203ENST00000554264 KRT76Q01546 638 aa8□□□□□ -1.13
VPS33B-203ENST00000554264 DDX10Q13206 875 aaKnown RBP8□□□□□ -1.13
VPS33B-203ENST00000554264 SWI5Q1ZZU3 235 aa8□□□□□ -1.13
VPS33B-203ENST00000554264 IRF7Q92985 503 aa8□□□□□ -1.13
VPS33B-203ENST00000554264 ZIC5Q96T25 663 aa8□□□□□ -1.13
VPS33B-203ENST00000554264 NAIPQ13075 1403 aa8□□□□□ -1.13
VPS33B-203ENST00000554264 FANCIQ9NVI1 1328 aa8□□□□□ -1.13
VPS33B-203ENST00000554264 HIRAP54198 1017 aaPredicted RBP7.99□□□□□ -1.13
VPS33B-203ENST00000554264 SV2AQ7L0J3 742 aa7.99□□□□□ -1.13
VPS33B-203ENST00000554264 UNC5CLQ8IV45 518 aa7.99□□□□□ -1.13
VPS33B-203ENST00000554264 STAG2Q8N3U4 1231 aa7.99□□□□□ -1.13
VPS33B-203ENST00000554264 GTPBP3Q969Y2 492 aaKnown RBP7.99□□□□□ -1.13
VPS33B-203ENST00000554264 CRISPLD1Q9H336 500 aa7.99□□□□□ -1.13
VPS33B-203ENST00000554264 ZDHHC3Q9NYG2 299 aa7.99□□□□□ -1.13
VPS33B-203ENST00000554264 HCN2Q9UL51 889 aa7.99□□□□□ -1.13
VPS33B-203ENST00000554264 PXDNQ92626 1479 aa7.99□□□□□ -1.13
VPS33B-203ENST00000554264 RPGRIP1LQ68CZ1 1315 aa7.99□□□□□ -1.13
VPS33B-203ENST00000554264 A0A1W2PNR3 127 aa7.98□□□□□ -1.13
VPS33B-203ENST00000554264 GPR25O00155 361 aa7.98□□□□□ -1.13
VPS33B-203ENST00000554264 FKBP5Q13451 457 aaPredicted RBP7.98□□□□□ -1.13
VPS33B-203ENST00000554264 RNFT1Q5M7Z0 435 aa7.98□□□□□ -1.13
VPS33B-203ENST00000554264 CAPN12Q6ZSI9 719 aa7.98□□□□□ -1.13
VPS33B-203ENST00000554264 NUCKS1Q9H1E3 243 aaKnown RBP7.98□□□□□ -1.13
VPS33B-203ENST00000554264 RALGAPBQ86X10 1494 aa7.98□□□□□ -1.13
VPS33B-203ENST00000554264 SLIT2O94813 1529 aa7.98□□□□□ -1.13
VPS33B-203ENST00000554264 CDC42BPGQ6DT37 1551 aa7.97□□□□□ -1.13
VPS33B-203ENST00000554264 CLTCL1P53675 1640 aa7.97□□□□□ -1.13
VPS33B-203ENST00000554264 FOXO3O43524 673 aa7.97□□□□□ -1.13
VPS33B-203ENST00000554264 NBPF1Q3BBV0 1214 aa7.97□□□□□ -1.13
VPS33B-203ENST00000554264 C1orf216Q8TAB5 229 aa7.97□□□□□ -1.13
VPS33B-203ENST00000554264 CLP1Q92989 425 aaKnown RBP7.97□□□□□ -1.13
VPS33B-203ENST00000554264 PHACTR1Q9C0D0 580 aa7.97□□□□□ -1.13
VPS33B-203ENST00000554264 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.97□□□□□ -1.13
VPS33B-203ENST00000554264 LRP5O75197 1615 aa7.96□□□□□ -1.13
VPS33B-203ENST00000554264 H7C1W4 665 aa7.96□□□□□ -1.14
VPS33B-203ENST00000554264 SCNN1AP37088 669 aa7.96□□□□□ -1.14
VPS33B-203ENST00000554264 GAS6Q14393 721 aa7.96□□□□□ -1.14
VPS33B-203ENST00000554264 ARSJQ5FYB0 599 aaPredicted RBP7.96□□□□□ -1.14
VPS33B-203ENST00000554264 DEFB132Q7Z7B7 95 aa7.96□□□□□ -1.14
VPS33B-203ENST00000554264 ALDH16A1Q8IZ83 802 aa7.96□□□□□ -1.14
VPS33B-203ENST00000554264 GMCL1Q96IK5 515 aa7.96□□□□□ -1.14
VPS33B-203ENST00000554264 COL25A1Q9BXS0 654 aaPredicted RBP7.96□□□□□ -1.14
VPS33B-203ENST00000554264 CCDC144AA2RUR9 1427 aa7.95□□□□□ -1.14
VPS33B-203ENST00000554264 MARF1Q9Y4F3 1742 aaKnown RBP7.95□□□□□ -1.14
VPS33B-203ENST00000554264 KIF1BO60333 1816 aa7.95□□□□□ -1.14
VPS33B-203ENST00000554264 CSB-PGBD3P0DP91 1061 aa7.95□□□□□ -1.14
VPS33B-203ENST00000554264 TATP17735 454 aaPredicted RBP7.95□□□□□ -1.14
VPS33B-203ENST00000554264 BAG6P46379 1132 aa7.95□□□□□ -1.14
VPS33B-203ENST00000554264 XPCQ01831 940 aaPredicted RBP7.95□□□□□ -1.14
VPS33B-203ENST00000554264 C1orf53Q5VUE5 145 aa7.95□□□□□ -1.14
VPS33B-203ENST00000554264 PGBD3Q8N328 593 aa7.95□□□□□ -1.14
VPS33B-203ENST00000554264 SIN3AQ96ST3 1273 aa7.95□□□□□ -1.14
VPS33B-203ENST00000554264 ZCCHC2Q9C0B9 1178 aaKnown RBP7.95□□□□□ -1.14
VPS33B-203ENST00000554264 NDFIP2Q9NV92 336 aa7.95□□□□□ -1.14
VPS33B-203ENST00000554264 CXXC1Q9P0U4 656 aaPredicted RBP7.95□□□□□ -1.14
VPS33B-203ENST00000554264 GLI3P10071 1580 aa7.95□□□□□ -1.14
VPS33B-203ENST00000554264 SPATA31A3Q5VYP0 1347 aa7.95□□□□□ -1.14
VPS33B-203ENST00000554264 EP400Q96L91 3159 aa7.94□□□□□ -1.14
VPS33B-203ENST00000554264 BNIP3LO60238 219 aa7.94□□□□□ -1.14
VPS33B-203ENST00000554264 VPS72Q15906 364 aa7.94□□□□□ -1.14
VPS33B-203ENST00000554264 KRT27Q7Z3Y8 459 aa7.94□□□□□ -1.14
VPS33B-203ENST00000554264 ZNF280CQ8ND82 737 aa7.94□□□□□ -1.14
VPS33B-203ENST00000554264 WIPF1O43516 503 aa7.93□□□□□ -1.14
VPS33B-203ENST00000554264 LBRQ14739 615 aaKnown RBP7.93□□□□□ -1.14
VPS33B-203ENST00000554264 PHLDB3Q6NSJ2 640 aa7.93□□□□□ -1.14
VPS33B-203ENST00000554264 LRRC69Q6ZNQ3 347 aa7.93□□□□□ -1.14
VPS33B-203ENST00000554264 BICDL1Q6ZP65 573 aa7.93□□□□□ -1.14
VPS33B-203ENST00000554264 RETREG2Q8NC44 543 aa7.93□□□□□ -1.14
VPS33B-203ENST00000554264 HSH2DQ96JZ2 352 aa7.93□□□□□ -1.14
VPS33B-203ENST00000554264 CNTNAP3BQ96NU0 1288 aa7.93□□□□□ -1.14
VPS33B-203ENST00000554264 CNTNAP3Q9BZ76 1288 aa7.93□□□□□ -1.14
VPS33B-203ENST00000554264 LRFN2Q9ULH4 789 aa7.93□□□□□ -1.14
VPS33B-203ENST00000554264 BCS1LQ9Y276 419 aa7.93□□□□□ -1.14
VPS33B-203ENST00000554264 CHMP3Q9Y3E7 222 aa7.93□□□□□ -1.14
VPS33B-203ENST00000554264 CCDC9Q9Y3X0 531 aaKnown RBP7.93□□□□□ -1.14
VPS33B-203ENST00000554264 TECPR2O15040 1411 aa7.93□□□□□ -1.14
VPS33B-203ENST00000554264 USP32Q8NFA0 1604 aa7.92□□□□□ -1.14
VPS33B-203ENST00000554264 LORP23490 312 aaPredicted RBP7.92□□□□□ -1.14
VPS33B-203ENST00000554264 EFHC2Q5JST6 749 aa7.92□□□□□ -1.14
VPS33B-203ENST00000554264 KRT28Q7Z3Y7 464 aa7.92□□□□□ -1.14
VPS33B-203ENST00000554264 NLRP8Q86W28 1048 aa7.92□□□□□ -1.14
VPS33B-203ENST00000554264 RHPN1Q8TCX5 695 aa7.92□□□□□ -1.14
VPS33B-203ENST00000554264 ABHD17AQ96GS6 310 aa7.92□□□□□ -1.14
VPS33B-203ENST00000554264 SAP130Q9H0E3 1048 aa7.92□□□□□ -1.14
VPS33B-203ENST00000554264 PPP4R2Q9NY27 417 aa7.92□□□□□ -1.14
VPS33B-203ENST00000554264 TNS3Q68CZ2 1445 aa7.92□□□□□ -1.14
VPS33B-203ENST00000554264 KIF1AQ12756 1690 aa7.92□□□□□ -1.14
VPS33B-203ENST00000554264 ATP2B4P23634 1241 aa7.91□□□□□ -1.14
VPS33B-203ENST00000554264 SSFA2P28290 1259 aa7.91□□□□□ -1.14
VPS33B-203ENST00000554264 SUSD3Q96L08 255 aa7.91□□□□□ -1.14
VPS33B-203ENST00000554264 MKNK1Q9BUB5 465 aa7.91□□□□□ -1.14
VPS33B-203ENST00000554264 KLK14Q9P0G3 267 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms