RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 COPRSQ9NQ92 184 aa17.9■□□□□ 0.46
CCDC88C-207ENST00000554051 SCN9AQ15858 1988 aa17.9■□□□□ 0.46
CCDC88C-207ENST00000554051 USP17L3A6NCW0 530 aa17.89■□□□□ 0.45
CCDC88C-207ENST00000554051 USP17L4A6NCW7 530 aa17.89■□□□□ 0.45
CCDC88C-207ENST00000554051 PSMD14O00487 310 aa17.89■□□□□ 0.45
CCDC88C-207ENST00000554051 SRGAP3O43295 1099 aa17.89■□□□□ 0.45
CCDC88C-207ENST00000554051 VIL1P09327 827 aaKnown RBP17.89■□□□□ 0.45
CCDC88C-207ENST00000554051 IL15P40933 162 aaPredicted RBP17.89■□□□□ 0.45
CCDC88C-207ENST00000554051 PTPN12Q05209 780 aaKnown RBP17.89■□□□□ 0.45
CCDC88C-207ENST00000554051 PUM3Q15397 648 aaKnown RBP17.89■□□□□ 0.45
CCDC88C-207ENST00000554051 CHADLQ6NUI6 762 aa17.89■□□□□ 0.45
CCDC88C-207ENST00000554051 USP17L1Q7RTZ2 530 aa17.89■□□□□ 0.45
CCDC88C-207ENST00000554051 DDX19BQ9UMR2 479 aa17.89■□□□□ 0.45
CCDC88C-207ENST00000554051 H7C1D1 291 aa17.88■□□□□ 0.45
CCDC88C-207ENST00000554051 TAF5LO75529 589 aa17.88■□□□□ 0.45
CCDC88C-207ENST00000554051 PDE8BO95263 885 aa17.88■□□□□ 0.45
CCDC88C-207ENST00000554051 PDE3AQ14432 1141 aa17.88■□□□□ 0.45
CCDC88C-207ENST00000554051 STRIP1Q5VSL9 837 aa17.88■□□□□ 0.45
CCDC88C-207ENST00000554051 TNNQ9UQP3 1299 aa17.88■□□□□ 0.45
CCDC88C-207ENST00000554051 IRS2Q9Y4H2 1338 aa17.88■□□□□ 0.45
CCDC88C-207ENST00000554051 ARAP2Q8WZ64 1704 aa17.87■□□□□ 0.45
CCDC88C-207ENST00000554051 ZNF646O15015 1829 aaPredicted RBP17.87■□□□□ 0.45
CCDC88C-207ENST00000554051 IFIT1P09914 478 aaKnown RBP17.87■□□□□ 0.45
CCDC88C-207ENST00000554051 RLBP1P12271 317 aa17.87■□□□□ 0.45
CCDC88C-207ENST00000554051 HSPA6P17066 643 aa17.87■□□□□ 0.45
CCDC88C-207ENST00000554051 MVPQ14764 893 aaKnown RBP17.87■□□□□ 0.45
CCDC88C-207ENST00000554051 EAPPQ56P03 285 aaPredicted RBP17.87■□□□□ 0.45
CCDC88C-207ENST00000554051 CAVIN4Q5BKX8 364 aa17.87■□□□□ 0.45
CCDC88C-207ENST00000554051 RSBN1LQ6PCB5 846 aaPredicted RBP17.87■□□□□ 0.45
CCDC88C-207ENST00000554051 VGLL2Q8N8G2 317 aa17.87■□□□□ 0.45
CCDC88C-207ENST00000554051 HELBQ8NG08 1087 aaPredicted RBP17.87■□□□□ 0.45
CCDC88C-207ENST00000554051 PUS3Q9BZE2 481 aaKnown RBP17.87■□□□□ 0.45
CCDC88C-207ENST00000554051 PLIN1O60240 522 aa17.86■□□□□ 0.45
CCDC88C-207ENST00000554051 SLC5A1P13866 664 aa17.86■□□□□ 0.45
CCDC88C-207ENST00000554051 IL1R1P14778 569 aa17.86■□□□□ 0.45
CCDC88C-207ENST00000554051 LRRC24Q50LG9 513 aa17.86■□□□□ 0.45
CCDC88C-207ENST00000554051 MICALL2Q8IY33 904 aa17.86■□□□□ 0.45
CCDC88C-207ENST00000554051 ZC3H15Q8WU90 426 aaKnown RBP17.86■□□□□ 0.45
CCDC88C-207ENST00000554051 YTHDC1Q96MU7 727 aaKnown RBP17.86■□□□□ 0.45
CCDC88C-207ENST00000554051 CD209Q9NNX6 404 aa17.86■□□□□ 0.45
CCDC88C-207ENST00000554051 ZBTB7BO15156 539 aaPredicted RBP17.85■□□□□ 0.45
CCDC88C-207ENST00000554051 KLRK1P26718 216 aa17.85■□□□□ 0.45
CCDC88C-207ENST00000554051 EPS15P42566 896 aa17.85■□□□□ 0.45
CCDC88C-207ENST00000554051 FKBP1AP62942 108 aaKnown RBP17.85■□□□□ 0.45
CCDC88C-207ENST00000554051 VPS37DQ86XT2 251 aa17.85■□□□□ 0.45
CCDC88C-207ENST00000554051 KLHDC4Q8TBB5 520 aa17.85■□□□□ 0.45
CCDC88C-207ENST00000554051 LPIN2Q92539 896 aa17.85■□□□□ 0.45
CCDC88C-207ENST00000554051 CEP126Q9P2H0 1117 aa17.85■□□□□ 0.45
CCDC88C-207ENST00000554051 CNOT7Q9UIV1 285 aaKnown RBP17.85■□□□□ 0.45
CCDC88C-207ENST00000554051 APLP1P51693 650 aa17.84■□□□□ 0.45
CCDC88C-207ENST00000554051 TXNRD3Q86VQ6 643 aa17.84■□□□□ 0.45
CCDC88C-207ENST00000554051 PANK1Q8TE04 598 aa17.84■□□□□ 0.45
CCDC88C-207ENST00000554051 USP17L8P0C7I0 530 aa17.83■□□□□ 0.44
CCDC88C-207ENST00000554051 HIBADHP31937 336 aaKnown RBP17.83■□□□□ 0.44
CCDC88C-207ENST00000554051 DACT2Q5SW24 774 aa17.83■□□□□ 0.44
CCDC88C-207ENST00000554051 ATG9AQ7Z3C6 839 aa17.83■□□□□ 0.44
CCDC88C-207ENST00000554051 OGFOD1Q8N543 542 aa17.83■□□□□ 0.44
CCDC88C-207ENST00000554051 SIL1Q9H173 461 aa17.83■□□□□ 0.44
CCDC88C-207ENST00000554051 CLEC11AQ9Y240 323 aa17.83■□□□□ 0.44
CCDC88C-207ENST00000554051 AKAP2Q9Y2D5 859 aa17.83■□□□□ 0.44
CCDC88C-207ENST00000554051 FGFR2P21802 821 aa17.82■□□□□ 0.44
CCDC88C-207ENST00000554051 ZNF280AP59817 542 aaPredicted RBP17.82■□□□□ 0.44
CCDC88C-207ENST00000554051 TTLL5Q6EMB2 1281 aa17.82■□□□□ 0.44
CCDC88C-207ENST00000554051 SSH3Q8TE77 659 aa17.82■□□□□ 0.44
CCDC88C-207ENST00000554051 FBXW7Q969H0 707 aa17.82■□□□□ 0.44
CCDC88C-207ENST00000554051 HDAC9Q9UKV0 1011 aa17.82■□□□□ 0.44
CCDC88C-207ENST00000554051 ZBTB12Q9Y330 459 aaPredicted RBP17.82■□□□□ 0.44
CCDC88C-207ENST00000554051 FAM205AQ6ZU69 1335 aa17.81■□□□□ 0.44
CCDC88C-207ENST00000554051 WTIPA6NIX2 430 aaPredicted RBP17.81■□□□□ 0.44
CCDC88C-207ENST00000554051 ZBTB22O15209 634 aa17.81■□□□□ 0.44
CCDC88C-207ENST00000554051 SASH1O94885 1247 aa17.81■□□□□ 0.44
CCDC88C-207ENST00000554051 ATP8B2P98198 1209 aa17.81■□□□□ 0.44
CCDC88C-207ENST00000554051 ATP2B3Q16720 1220 aa17.81■□□□□ 0.44
CCDC88C-207ENST00000554051 KIF4BQ2VIQ3 1234 aa17.81■□□□□ 0.44
CCDC88C-207ENST00000554051 GMLQ99445 158 aa17.81■□□□□ 0.44
CCDC88C-207ENST00000554051 MYH13Q9UKX3 1938 aa17.8■□□□□ 0.44
CCDC88C-207ENST00000554051 HMMRO75330 724 aa17.8■□□□□ 0.44
CCDC88C-207ENST00000554051 GTF2IP78347 998 aa17.8■□□□□ 0.44
CCDC88C-207ENST00000554051 G3BP1Q13283 466 aaKnown RBP eCLIP17.8■□□□□ 0.44
CCDC88C-207ENST00000554051 POLA2Q14181 598 aa17.8■□□□□ 0.44
CCDC88C-207ENST00000554051 TDRD7Q8NHU6 1098 aaKnown RBP17.8■□□□□ 0.44
CCDC88C-207ENST00000554051 TBC1D22AQ8WUA7 517 aa17.8■□□□□ 0.44
CCDC88C-207ENST00000554051 FAM84BQ96KN1 310 aaPredicted RBP17.8■□□□□ 0.44
CCDC88C-207ENST00000554051 KCNQ5Q9NR82 932 aa17.8■□□□□ 0.44
CCDC88C-207ENST00000554051 GNL3LQ9NVN8 582 aaKnown RBP17.8■□□□□ 0.44
CCDC88C-207ENST00000554051 PNMA6EA0A0J9YXQ4 647 aa17.79■□□□□ 0.44
CCDC88C-207ENST00000554051 SNAP23O00161 211 aa17.79■□□□□ 0.44
CCDC88C-207ENST00000554051 SEMA3EO15041 775 aa17.79■□□□□ 0.44
CCDC88C-207ENST00000554051 POTEIP0CG38 1075 aa17.79■□□□□ 0.44
CCDC88C-207ENST00000554051 POTEJP0CG39 1038 aa17.79■□□□□ 0.44
CCDC88C-207ENST00000554051 GYG1P46976 350 aa17.79■□□□□ 0.44
CCDC88C-207ENST00000554051 RPAP2Q8IXW5 612 aaPredicted RBP17.79■□□□□ 0.44
CCDC88C-207ENST00000554051 PGAP2Q9UHJ9 254 aa17.79■□□□□ 0.44
CCDC88C-207ENST00000554051 PA2G4Q9UQ80 394 aaKnown RBP17.79■□□□□ 0.44
CCDC88C-207ENST00000554051 COG6Q9Y2V7 657 aa17.79■□□□□ 0.44
CCDC88C-207ENST00000554051 PASKQ96RG2 1323 aa17.78■□□□□ 0.44
CCDC88C-207ENST00000554051 FRAT2O75474 233 aaPredicted RBP17.78■□□□□ 0.44
CCDC88C-207ENST00000554051 HSP90AB4PQ58FF6 505 aa17.78■□□□□ 0.44
CCDC88C-207ENST00000554051 CEP85Q6P2H3 762 aa17.78■□□□□ 0.44
CCDC88C-207ENST00000554051 FBXO33Q7Z6M2 555 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms