RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 PPIP5K2O43314 1243 aa15.08■□□□□ 0
SHMT2-209ENST00000553949 SMARCA5O60264 1052 aaPredicted RBP15.08■□□□□ 0
SHMT2-209ENST00000553949 IFIT1P09914 478 aaKnown RBP15.08■□□□□ 0
SHMT2-209ENST00000553949 IARSP41252 1262 aaKnown RBP15.08■□□□□ 0
SHMT2-209ENST00000553949 PRELPP51888 382 aa15.08■□□□□ 0
SHMT2-209ENST00000553949 TIMM10P62072 90 aa15.08■□□□□ 0
SHMT2-209ENST00000553949 KIAA2012Q0VF49 1180 aa15.08■□□□□ 0
SHMT2-209ENST00000553949 AOC3Q16853 763 aa15.08■□□□□ 0
SHMT2-209ENST00000553949 C15orf52Q6ZUT6 534 aaKnown RBP15.08■□□□□ 0
SHMT2-209ENST00000553949 TXNRD3Q86VQ6 643 aa15.08■□□□□ 0
SHMT2-209ENST00000553949 ZC3H12CQ9C0D7 883 aaKnown RBP15.08■□□□□ 0
SHMT2-209ENST00000553949 PPP4R2Q9NY27 417 aa15.08■□□□□ 0
SHMT2-209ENST00000553949 ZNF609O15014 1411 aa15.08■□□□□ 0
SHMT2-209ENST00000553949 LMNB1P20700 586 aa15.07■□□□□ 0
SHMT2-209ENST00000553949 ANKRD45Q5TZF3 282 aa15.07■□□□□ 0
SHMT2-209ENST00000553949 CLASRPQ8N2M8 674 aaKnown RBP15.07■□□□□ 0
SHMT2-209ENST00000553949 EAF2Q96CJ1 260 aaPredicted RBP15.07■□□□□ 0
SHMT2-209ENST00000553949 NEUROD6Q96NK8 337 aa15.07■□□□□ 0
SHMT2-209ENST00000553949 FER1L6Q2WGJ9 1857 aa15.07■□□□□ 0
SHMT2-209ENST00000553949 A0A1B0GUL6 1792 aa15.06■□□□□ 0
SHMT2-209ENST00000553949 ADORA1P30542 326 aa15.06■□□□□ 0
SHMT2-209ENST00000553949 B4GALNT3Q6L9W6 998 aa15.06■□□□□ 0
SHMT2-209ENST00000553949 AACSQ86V21 672 aa15.06■□□□□ 0
SHMT2-209ENST00000553949 LARGE2Q8N3Y3 721 aa15.06■□□□□ 0
SHMT2-209ENST00000553949 XAGE2Q96GT9 111 aa15.06■□□□□ 0
SHMT2-209ENST00000553949 BCL11AQ9H165 835 aa15.06■□□□□ 0
SHMT2-209ENST00000553949 KDM2BQ8NHM5 1336 aa15.06■□□□□ 0
SHMT2-209ENST00000553949 HIBADHP31937 336 aaKnown RBP15.05■□□□□ -0
SHMT2-209ENST00000553949 GYG1P46976 350 aa15.05■□□□□ -0
SHMT2-209ENST00000553949 DOK7Q18PE1 504 aa15.05■□□□□ -0
SHMT2-209ENST00000553949 CAVIN4Q5BKX8 364 aa15.05■□□□□ -0
SHMT2-209ENST00000553949 FBXO33Q7Z6M2 555 aa15.05■□□□□ -0
SHMT2-209ENST00000553949 FAM84BQ96KN1 310 aaPredicted RBP15.05■□□□□ -0
SHMT2-209ENST00000553949 CCDC8Q9H0W5 538 aaPredicted RBP15.05■□□□□ -0
SHMT2-209ENST00000553949 ZBTB47Q9UFB7 747 aaPredicted RBP15.05■□□□□ -0
SHMT2-209ENST00000553949 DBNLQ9UJU6 430 aaKnown RBP15.05■□□□□ -0
SHMT2-209ENST00000553949 G3V3G9 751 aa15.04■□□□□ -0
SHMT2-209ENST00000553949 IFIT2P09913 472 aaKnown RBP15.04■□□□□ -0
SHMT2-209ENST00000553949 BCAMP50895 628 aa15.04■□□□□ -0
SHMT2-209ENST00000553949 NUCB1Q02818 461 aa15.04■□□□□ -0
SHMT2-209ENST00000553949 DCAF8Q5TAQ9 597 aa15.04■□□□□ -0
SHMT2-209ENST00000553949 C9orf131Q5VYM1 1079 aa15.04■□□□□ -0
SHMT2-209ENST00000553949 CENPQQ7L2Z9 268 aaPredicted RBP15.04■□□□□ -0
SHMT2-209ENST00000553949 ZNF804AQ7Z570 1209 aa15.04■□□□□ -0
SHMT2-209ENST00000553949 VPS37DQ86XT2 251 aa15.04■□□□□ -0
SHMT2-209ENST00000553949 NIM1KQ8IY84 436 aa15.04■□□□□ -0
SHMT2-209ENST00000553949 DBNDD2Q9BQY9 259 aa15.04■□□□□ -0
SHMT2-209ENST00000553949 COA1Q9GZY4 146 aa15.04■□□□□ -0
SHMT2-209ENST00000553949 DBNDD1Q9H9R9 158 aa15.04■□□□□ -0
SHMT2-209ENST00000553949 TLR7Q9NYK1 1049 aaKnown RBP15.04■□□□□ -0
SHMT2-209ENST00000553949 RNF181Q9P0P0 153 aa15.04■□□□□ -0
SHMT2-209ENST00000553949 ECE2O60344 883 aa15.03■□□□□ -0
SHMT2-209ENST00000553949 GORABQ5T7V8 394 aa15.03■□□□□ -0
SHMT2-209ENST00000553949 CHD1LQ86WJ1 897 aa15.03■□□□□ -0
SHMT2-209ENST00000553949 JDP2Q8WYK2 163 aa15.03■□□□□ -0
SHMT2-209ENST00000553949 CD209Q9NNX6 404 aa15.03■□□□□ -0
SHMT2-209ENST00000553949 COL4A5P29400 1685 aa15.03■□□□□ -0
SHMT2-209ENST00000553949 PHKA1P46020 1223 aa15.02■□□□□ -0
SHMT2-209ENST00000553949 CCDC102BQ68D86 513 aa15.02■□□□□ -0
SHMT2-209ENST00000553949 PODNQ7Z5L7 613 aa15.02■□□□□ -0
SHMT2-209ENST00000553949 LNPKQ9C0E8 428 aa15.02■□□□□ -0
SHMT2-209ENST00000553949 ZNRF3Q9ULT6 936 aa15.02■□□□□ -0
SHMT2-209ENST00000553949 YDJCA8MPS7 323 aa15.01□□□□□ -0.01
SHMT2-209ENST00000553949 IL1R1P14778 569 aa15.01□□□□□ -0.01
SHMT2-209ENST00000553949 CCDC158Q5M9N0 1113 aa15.01□□□□□ -0.01
SHMT2-209ENST00000553949 C16orf71Q8IYS4 520 aaPredicted RBP15.01□□□□□ -0.01
SHMT2-209ENST00000553949 TDRD7Q8NHU6 1098 aaKnown RBP15.01□□□□□ -0.01
SHMT2-209ENST00000553949 GNL3LQ9NVN8 582 aaKnown RBP15.01□□□□□ -0.01
SHMT2-209ENST00000553949 FZD9O00144 591 aa15□□□□□ -0.01
SHMT2-209ENST00000553949 OTUD7AQ8TE49 926 aaPredicted RBP15□□□□□ -0.01
SHMT2-209ENST00000553949 IQSEC3Q9UPP2 1182 aaPredicted RBP15□□□□□ -0.01
SHMT2-209ENST00000553949 UQCRFS1P1P0C7P4 283 aa14.99□□□□□ -0.01
SHMT2-209ENST00000553949 TTC39AQ5SRH9 613 aa14.99□□□□□ -0.01
SHMT2-209ENST00000553949 ZNF512BQ96KM6 892 aaPredicted RBP14.99□□□□□ -0.01
SHMT2-209ENST00000553949 KCNQ5Q9NR82 932 aa14.99□□□□□ -0.01
SHMT2-209ENST00000553949 ARAP2Q8WZ64 1704 aa14.99□□□□□ -0.01
SHMT2-209ENST00000553949 SEMA3EO15041 775 aa14.98□□□□□ -0.01
SHMT2-209ENST00000553949 ZBTB22O15209 634 aa14.98□□□□□ -0.01
SHMT2-209ENST00000553949 FRAT2O75474 233 aaPredicted RBP14.98□□□□□ -0.01
SHMT2-209ENST00000553949 ARID4AP29374 1257 aaPredicted RBP14.98□□□□□ -0.01
SHMT2-209ENST00000553949 EIF6P56537 245 aaKnown RBP14.98□□□□□ -0.01
SHMT2-209ENST00000553949 CXCL9Q07325 125 aa14.98□□□□□ -0.01
SHMT2-209ENST00000553949 GPATCH3Q96I76 525 aa14.98□□□□□ -0.01
SHMT2-209ENST00000553949 ECHDC1Q9NTX5 307 aa14.98□□□□□ -0.01
SHMT2-209ENST00000553949 GTF3C3Q9Y5Q9 886 aa14.98□□□□□ -0.01
SHMT2-209ENST00000553949 SALL3Q9BXA9 1300 aa14.97□□□□□ -0.01
SHMT2-209ENST00000553949 ZNF541Q9H0D2 1346 aa14.97□□□□□ -0.01
SHMT2-209ENST00000553949 ZC3H4Q9UPT8 1303 aaKnown RBP14.97□□□□□ -0.01
SHMT2-209ENST00000553949 RAD17O75943 681 aa14.97□□□□□ -0.01
SHMT2-209ENST00000553949 MX1P20591 662 aa14.97□□□□□ -0.01
SHMT2-209ENST00000553949 GTF2IP78347 998 aa14.97□□□□□ -0.01
SHMT2-209ENST00000553949 RASGRF1Q13972 1273 aa14.97□□□□□ -0.01
SHMT2-209ENST00000553949 SCARF1Q14162 830 aa14.97□□□□□ -0.01
SHMT2-209ENST00000553949 DENND2AQ9ULE3 1009 aa14.97□□□□□ -0.01
SHMT2-209ENST00000553949 JAG2Q9Y219 1238 aa14.97□□□□□ -0.01
SHMT2-209ENST00000553949 USP17L3A6NCW0 530 aa14.96□□□□□ -0.01
SHMT2-209ENST00000553949 USP17L4A6NCW7 530 aa14.96□□□□□ -0.01
SHMT2-209ENST00000553949 SBF1O95248 1867 aa14.96□□□□□ -0.01
SHMT2-209ENST00000553949 ATP5JP18859 108 aa14.96□□□□□ -0.01
SHMT2-209ENST00000553949 PDE4AP27815 886 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms