RNA–Protein interactions for RNA: ENST00000553709.5

ARHGEF40-202, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 5,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-202ENST00000553709 MAPK8IP2Q13387 824 aaPredicted RBP17.59■□□□□ 0.41
ARHGEF40-202ENST00000553709 CWF19L2Q2TBE0 894 aaKnown RBP17.59■□□□□ 0.41
ARHGEF40-202ENST00000553709 CCDC178Q5BJE1 867 aa17.59■□□□□ 0.41
ARHGEF40-202ENST00000553709 MAP3K19Q56UN5 1328 aa17.59■□□□□ 0.41
ARHGEF40-202ENST00000553709 RTN1Q16799 776 aa17.59■□□□□ 0.41
ARHGEF40-202ENST00000553709 ESR2Q92731 530 aa17.59■□□□□ 0.41
ARHGEF40-202ENST00000553709 HSPA2P54652 639 aa17.58■□□□□ 0.41
ARHGEF40-202ENST00000553709 CCDC40Q4G0X9 1142 aa17.58■□□□□ 0.41
ARHGEF40-202ENST00000553709 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.58■□□□□ 0.41
ARHGEF40-202ENST00000553709 NBPF7P0C2Y1 421 aaPredicted RBP17.58■□□□□ 0.41
ARHGEF40-202ENST00000553709 SLC9C2Q5TAH2 1124 aa17.58■□□□□ 0.41
ARHGEF40-202ENST00000553709 LRRC59Q96AG4 307 aaKnown RBP17.58■□□□□ 0.41
ARHGEF40-202ENST00000553709 RMND1Q9NWS8 449 aa17.58■□□□□ 0.41
ARHGEF40-202ENST00000553709 DIP2CQ9Y2E4 1556 aa17.58■□□□□ 0.4
ARHGEF40-202ENST00000553709 RAD50Q92878 1312 aa17.58■□□□□ 0.4
ARHGEF40-202ENST00000553709 TYRO3Q06418 890 aa17.58■□□□□ 0.4
ARHGEF40-202ENST00000553709 PRC1O43663 620 aa17.58■□□□□ 0.4
ARHGEF40-202ENST00000553709 AOPEPQ8N6M6 819 aa17.58■□□□□ 0.4
ARHGEF40-202ENST00000553709 VAT1LQ9HCJ6 419 aa17.58■□□□□ 0.4
ARHGEF40-202ENST00000553709 MADDQ8WXG6 1647 aa17.58■□□□□ 0.4
ARHGEF40-202ENST00000553709 DESP17661 470 aa17.57■□□□□ 0.4
ARHGEF40-202ENST00000553709 SLC4A4Q9Y6R1 1079 aa17.57■□□□□ 0.4
ARHGEF40-202ENST00000553709 ADGRB3O60242 1522 aa17.57■□□□□ 0.4
ARHGEF40-202ENST00000553709 HS1BP3Q53T59 392 aa17.57■□□□□ 0.4
ARHGEF40-202ENST00000553709 RUFY3Q7L099 469 aa17.57■□□□□ 0.4
ARHGEF40-202ENST00000553709 C6orf229H3BNL8 230 aa17.57■□□□□ 0.4
ARHGEF40-202ENST00000553709 CYP7A1P22680 504 aa17.57■□□□□ 0.4
ARHGEF40-202ENST00000553709 GBP2P32456 591 aaPredicted RBP17.57■□□□□ 0.4
ARHGEF40-202ENST00000553709 IL13P35225 146 aa17.57■□□□□ 0.4
ARHGEF40-202ENST00000553709 BMS1Q14692 1282 aaKnown RBP17.57■□□□□ 0.4
ARHGEF40-202ENST00000553709 TRIM47Q96LD4 638 aa17.56■□□□□ 0.4
ARHGEF40-202ENST00000553709 MARCKSP29966 332 aaPredicted RBP17.56■□□□□ 0.4
ARHGEF40-202ENST00000553709 PAF1Q8N7H5 531 aa17.56■□□□□ 0.4
ARHGEF40-202ENST00000553709 TTC12Q9H892 705 aaPredicted RBP17.56■□□□□ 0.4
ARHGEF40-202ENST00000553709 SPTLC2O15270 562 aa17.56■□□□□ 0.4
ARHGEF40-202ENST00000553709 RNF113AO15541 343 aaKnown RBP17.56■□□□□ 0.4
ARHGEF40-202ENST00000553709 CTAGE1Q96RT6 745 aa17.56■□□□□ 0.4
ARHGEF40-202ENST00000553709 IFIT1BQ5T764 474 aaKnown RBP17.56■□□□□ 0.4
ARHGEF40-202ENST00000553709 A2ML1A8K2U0 1454 aa17.56■□□□□ 0.4
ARHGEF40-202ENST00000553709 HOXC9P31274 260 aa17.55■□□□□ 0.4
ARHGEF40-202ENST00000553709 AFMP43652 599 aa17.55■□□□□ 0.4
ARHGEF40-202ENST00000553709 NAA15Q9BXJ9 866 aaKnown RBP17.55■□□□□ 0.4
ARHGEF40-202ENST00000553709 SBNO1A3KN83 1393 aa17.55■□□□□ 0.4
ARHGEF40-202ENST00000553709 RTL1A6NKG5 1358 aa17.55■□□□□ 0.4
ARHGEF40-202ENST00000553709 PPRC1Q5VV67 1664 aaKnown RBP17.55■□□□□ 0.4
ARHGEF40-202ENST00000553709 RRAGBQ5VZM2 374 aa17.55■□□□□ 0.4
ARHGEF40-202ENST00000553709 CAMSAP1Q5T5Y3 1602 aa17.55■□□□□ 0.4
ARHGEF40-202ENST00000553709 LRRC27Q9C0I9 530 aa17.55■□□□□ 0.4
ARHGEF40-202ENST00000553709 RNF123Q5XPI4 1314 aa17.55■□□□□ 0.4
ARHGEF40-202ENST00000553709 NFATC2IPQ8NCF5 419 aa17.55■□□□□ 0.4
ARHGEF40-202ENST00000553709 EHBP1Q8NDI1 1231 aa17.55■□□□□ 0.4
ARHGEF40-202ENST00000553709 STX8Q9UNK0 236 aa17.55■□□□□ 0.4
ARHGEF40-202ENST00000553709 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.55■□□□□ 0.42e-7■■□□□ 11.9
ARHGEF40-202ENST00000553709 KIDINS220Q9ULH0 1771 aa17.55■□□□□ 0.4
ARHGEF40-202ENST00000553709 GCP02774 474 aa17.55■□□□□ 0.4
ARHGEF40-202ENST00000553709 EHMT1Q9H9B1 1298 aa17.55■□□□□ 0.4
ARHGEF40-202ENST00000553709 IFFO1Q0D2I5 559 aa17.54■□□□□ 0.4
ARHGEF40-202ENST00000553709 SLC4A8Q2Y0W8 1093 aa17.54■□□□□ 0.4
ARHGEF40-202ENST00000553709 TCERG1LQ5VWI1 586 aa17.54■□□□□ 0.4
ARHGEF40-202ENST00000553709 SPAG1Q07617 926 aa17.54■□□□□ 0.4
ARHGEF40-202ENST00000553709 TFCP2Q12800 502 aa17.54■□□□□ 0.4
ARHGEF40-202ENST00000553709 DHX32Q7L7V1 743 aaKnown RBP17.54■□□□□ 0.4
ARHGEF40-202ENST00000553709 EXOC1Q9NV70 894 aa17.54■□□□□ 0.4
ARHGEF40-202ENST00000553709 FAM135BQ49AJ0 1406 aa17.54■□□□□ 0.4
ARHGEF40-202ENST00000553709 SPDYE4A6NLX3 237 aa17.54■□□□□ 0.4
ARHGEF40-202ENST00000553709 G2E3Q7L622 706 aa17.54■□□□□ 0.4
ARHGEF40-202ENST00000553709 DYDC1Q8WWB3 177 aa17.54■□□□□ 0.4
ARHGEF40-202ENST00000553709 IP6K1Q92551 441 aa17.54■□□□□ 0.4
ARHGEF40-202ENST00000553709 SMARCC1Q92922 1105 aaPredicted RBP17.54■□□□□ 0.4
ARHGEF40-202ENST00000553709 ZMYND15Q9H091 742 aa17.54■□□□□ 0.4
ARHGEF40-202ENST00000553709 ZSWIM4Q9H7M6 989 aa17.54■□□□□ 0.4
ARHGEF40-202ENST00000553709 CALCOCO1Q9P1Z2 691 aa17.54■□□□□ 0.4
ARHGEF40-202ENST00000553709 ATP7BP35670 1465 aa17.54■□□□□ 0.4
ARHGEF40-202ENST00000553709 SYT1P21579 422 aa17.54■□□□□ 0.4
ARHGEF40-202ENST00000553709 APOBRQ0VD83 1088 aa17.54■□□□□ 0.4
ARHGEF40-202ENST00000553709 BCORL1Q5H9F3 1711 aa17.53■□□□□ 0.4
ARHGEF40-202ENST00000553709 PTPDC1A2A3K4 754 aa17.53■□□□□ 0.4
ARHGEF40-202ENST00000553709 GSTO1P78417 241 aa17.53■□□□□ 0.4
ARHGEF40-202ENST00000553709 CCDC113Q9H0I3 377 aa17.53■□□□□ 0.4
ARHGEF40-202ENST00000553709 TRIM35Q9UPQ4 493 aa17.53■□□□□ 0.4
ARHGEF40-202ENST00000553709 ABCA6Q8N139 1617 aa17.53■□□□□ 0.4
ARHGEF40-202ENST00000553709 TRIM21P19474 475 aaKnown RBP17.53■□□□□ 0.4
ARHGEF40-202ENST00000553709 CETN1Q12798 172 aa17.53■□□□□ 0.4
ARHGEF40-202ENST00000553709 HSP90AA4PQ58FG1 418 aa17.53■□□□□ 0.4
ARHGEF40-202ENST00000553709 KRI1Q8N9T8 703 aaKnown RBP17.53■□□□□ 0.4
ARHGEF40-202ENST00000553709 OTUD7AQ8TE49 926 aaPredicted RBP17.53■□□□□ 0.4
ARHGEF40-202ENST00000553709 JADE2Q9NQC1 790 aa17.53■□□□□ 0.4
ARHGEF40-202ENST00000553709 GLI2P10070 1586 aa17.53■□□□□ 0.4
ARHGEF40-202ENST00000553709 DNAI1Q9UI46 699 aa17.53■□□□□ 0.4
ARHGEF40-202ENST00000553709 STAT6P42226 847 aa17.52■□□□□ 0.4
ARHGEF40-202ENST00000553709 BICC1Q9H694 974 aaKnown RBP17.52■□□□□ 0.4
ARHGEF40-202ENST00000553709 IQSEC3Q9UPP2 1182 aaPredicted RBP17.52■□□□□ 0.4
ARHGEF40-202ENST00000553709 EZRP15311 586 aaKnown RBP17.52■□□□□ 0.39
ARHGEF40-202ENST00000553709 PLCD4Q9BRC7 762 aa17.52■□□□□ 0.39
ARHGEF40-202ENST00000553709 TMCO5BA8MYB1 307 aa17.52■□□□□ 0.39
ARHGEF40-202ENST00000553709 HLTFQ14527 1009 aaKnown RBP eCLIP17.52■□□□□ 0.39
ARHGEF40-202ENST00000553709 NBPF6Q5VWK0 638 aa17.52■□□□□ 0.39
ARHGEF40-202ENST00000553709 CHST3Q7LGC8 479 aa17.52■□□□□ 0.39
ARHGEF40-202ENST00000553709 NBPF5PQ86XG9 351 aaPredicted RBP17.52■□□□□ 0.39
ARHGEF40-202ENST00000553709 NBPF4Q96M43 638 aa17.52■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms