RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 TBC1D2Q9BYX2 928 aa7.4□□□□□ -1.22
VIPAS39-204ENST00000553576 ANTXR1Q9H6X2 564 aa7.4□□□□□ -1.22
VIPAS39-204ENST00000553576 MAP3K2Q9Y2U5 619 aa7.4□□□□□ -1.22
VIPAS39-204ENST00000553576 PCDH11XQ9BZA7 1347 aa7.4□□□□□ -1.22
VIPAS39-204ENST00000553576 PCDH11YQ9BZA8 1340 aa7.4□□□□□ -1.22
VIPAS39-204ENST00000553576 AHDC1Q5TGY3 1603 aaPredicted RBP7.4□□□□□ -1.22
VIPAS39-204ENST00000553576 ARFGEF2Q9Y6D5 1785 aa7.4□□□□□ -1.23
VIPAS39-204ENST00000553576 USP42Q9H9J4 1324 aaKnown RBP7.39□□□□□ -1.23
VIPAS39-204ENST00000553576 PRAMEF22A3QJZ6 481 aa7.39□□□□□ -1.23
VIPAS39-204ENST00000553576 IL2RBP14784 551 aa7.39□□□□□ -1.23
VIPAS39-204ENST00000553576 CABP4P57796 275 aa7.39□□□□□ -1.23
VIPAS39-204ENST00000553576 SLC39A6Q13433 755 aa7.39□□□□□ -1.23
VIPAS39-204ENST00000553576 Q3C1V9 767 aa7.39□□□□□ -1.23
VIPAS39-204ENST00000553576 TOM1L2Q6ZVM7 507 aa7.39□□□□□ -1.23
VIPAS39-204ENST00000553576 OTUD7AQ8TE49 926 aaPredicted RBP7.39□□□□□ -1.23
VIPAS39-204ENST00000553576 KIF1BPQ96EK5 621 aa7.39□□□□□ -1.23
VIPAS39-204ENST00000553576 IL17RAQ96F46 866 aa7.39□□□□□ -1.23
VIPAS39-204ENST00000553576 METTL22Q9BUU2 404 aaPredicted RBP7.39□□□□□ -1.23
VIPAS39-204ENST00000553576 EXOC6BQ9Y2D4 811 aa7.39□□□□□ -1.23
VIPAS39-204ENST00000553576 USP16Q9Y5T5 823 aa7.39□□□□□ -1.23
VIPAS39-204ENST00000553576 GRM8O00222 908 aa7.38□□□□□ -1.23
VIPAS39-204ENST00000553576 ANXA1P04083 346 aa7.38□□□□□ -1.23
VIPAS39-204ENST00000553576 MX1P20591 662 aa7.38□□□□□ -1.23
VIPAS39-204ENST00000553576 GRIPAP1Q4V328 841 aa7.38□□□□□ -1.23
VIPAS39-204ENST00000553576 CASC1Q6TDU7 716 aa7.38□□□□□ -1.23
VIPAS39-204ENST00000553576 TTC5Q8N0Z6 440 aa7.38□□□□□ -1.23
VIPAS39-204ENST00000553576 RHPN1Q8TCX5 695 aa7.38□□□□□ -1.23
VIPAS39-204ENST00000553576 C9orf78Q9NZ63 289 aaPredicted RBP7.38□□□□□ -1.23
VIPAS39-204ENST00000553576 WNK3Q9BYP7 1800 aa7.38□□□□□ -1.23
VIPAS39-204ENST00000553576 NUP188Q5SRE5 1749 aa7.38□□□□□ -1.23
VIPAS39-204ENST00000553576 PLCH1Q4KWH8 1693 aa7.38□□□□□ -1.23
VIPAS39-204ENST00000553576 ROBO1Q9Y6N7 1651 aa7.38□□□□□ -1.23
VIPAS39-204ENST00000553576 KAT6BQ8WYB5 2073 aa7.37□□□□□ -1.23
VIPAS39-204ENST00000553576 SRGAP3O43295 1099 aa7.37□□□□□ -1.23
VIPAS39-204ENST00000553576 SURF6O75683 361 aaKnown RBP7.37□□□□□ -1.23
VIPAS39-204ENST00000553576 REC8O95072 547 aa7.37□□□□□ -1.23
VIPAS39-204ENST00000553576 IGKV5-2P06315 115 aa7.37□□□□□ -1.23
VIPAS39-204ENST00000553576 EVA1CP58658 441 aa7.37□□□□□ -1.23
VIPAS39-204ENST00000553576 NEXNQ0ZGT2 675 aa7.37□□□□□ -1.23
VIPAS39-204ENST00000553576 NFKBIBQ15653 356 aa7.37□□□□□ -1.23
VIPAS39-204ENST00000553576 COPS6Q7L5N1 327 aa7.37□□□□□ -1.23
VIPAS39-204ENST00000553576 RIC3Q7Z5B4 369 aa7.37□□□□□ -1.23
VIPAS39-204ENST00000553576 ERC1Q8IUD2 1116 aa7.37□□□□□ -1.23
VIPAS39-204ENST00000553576 KAZALD1Q96I82 304 aa7.37□□□□□ -1.23
VIPAS39-204ENST00000553576 TOGARAM1Q9Y4F4 1720 aa7.37□□□□□ -1.23
VIPAS39-204ENST00000553576 LRP6O75581 1613 aa7.37□□□□□ -1.23
VIPAS39-204ENST00000553576 LTBP4Q8N2S1 1624 aa7.37□□□□□ -1.23
VIPAS39-204ENST00000553576 KCPQ6ZWJ8 1503 aa7.37□□□□□ -1.23
VIPAS39-204ENST00000553576 TNS2Q63HR2 1409 aa7.36□□□□□ -1.23
VIPAS39-204ENST00000553576 TTC41PQ6P2S7 1318 aa7.36□□□□□ -1.23
VIPAS39-204ENST00000553576 NEURL1BA8MQ27 555 aa7.36□□□□□ -1.23
VIPAS39-204ENST00000553576 ERC2O15083 957 aa7.36□□□□□ -1.23
VIPAS39-204ENST00000553576 CAPN5O15484 640 aaPredicted RBP7.36□□□□□ -1.23
VIPAS39-204ENST00000553576 DDIT3P35638 169 aa7.36□□□□□ -1.23
VIPAS39-204ENST00000553576 GCKRQ14397 625 aa7.36□□□□□ -1.23
VIPAS39-204ENST00000553576 RABEP1Q15276 862 aa7.36□□□□□ -1.23
VIPAS39-204ENST00000553576 PLBD2Q8NHP8 589 aa7.36□□□□□ -1.23
VIPAS39-204ENST00000553576 XAGE3Q8WTP9 111 aa7.36□□□□□ -1.23
VIPAS39-204ENST00000553576 USB1Q9BQ65 265 aaKnown RBP7.36□□□□□ -1.23
VIPAS39-204ENST00000553576 TEX13AQ9BXU3 409 aaPredicted RBP7.36□□□□□ -1.23
VIPAS39-204ENST00000553576 DISP2A7MBM2 1401 aa7.35□□□□□ -1.23
VIPAS39-204ENST00000553576 CHMLP26374 656 aa7.35□□□□□ -1.23
VIPAS39-204ENST00000553576 CWF19L2Q2TBE0 894 aaKnown RBP7.35□□□□□ -1.23
VIPAS39-204ENST00000553576 RABL6Q3YEC7 729 aaPredicted RBP7.35□□□□□ -1.23
VIPAS39-204ENST00000553576 RTL5Q5HYW3 569 aaPredicted RBP7.35□□□□□ -1.23
VIPAS39-204ENST00000553576 HSCBQ8IWL3 235 aa7.35□□□□□ -1.23
VIPAS39-204ENST00000553576 CCDC24Q8N4L8 307 aa7.35□□□□□ -1.23
VIPAS39-204ENST00000553576 PI4K2BQ8TCG2 481 aa7.35□□□□□ -1.23
VIPAS39-204ENST00000553576 PHOX2BQ99453 314 aa7.35□□□□□ -1.23
VIPAS39-204ENST00000553576 COL16A1Q07092 1604 aaPredicted RBP7.34□□□□□ -1.23
VIPAS39-204ENST00000553576 H7C1W4 665 aa7.34□□□□□ -1.23
VIPAS39-204ENST00000553576 APBB1O00213 710 aa7.34□□□□□ -1.23
VIPAS39-204ENST00000553576 SEMA3EO15041 775 aa7.34□□□□□ -1.23
VIPAS39-204ENST00000553576 GNPATO15228 680 aa7.34□□□□□ -1.23
VIPAS39-204ENST00000553576 SIAH2O43255 324 aa7.34□□□□□ -1.23
VIPAS39-204ENST00000553576 CASP7P55210 303 aa7.34□□□□□ -1.23
VIPAS39-204ENST00000553576 ANAPC15P60006 121 aa7.34□□□□□ -1.23
VIPAS39-204ENST00000553576 AIMP1Q12904 312 aaKnown RBP7.34□□□□□ -1.23
VIPAS39-204ENST00000553576 TRIM28Q13263 835 aaKnown RBP7.34□□□□□ -1.23
VIPAS39-204ENST00000553576 NBPF14Q5TI25 921 aa7.34□□□□□ -1.23
VIPAS39-204ENST00000553576 NBPF10Q6P3W6 841 aaKnown RBP7.34□□□□□ -1.23
VIPAS39-204ENST00000553576 CLASRPQ8N2M8 674 aaKnown RBP7.34□□□□□ -1.23
VIPAS39-204ENST00000553576 NBPF15Q8N660 670 aa7.34□□□□□ -1.23
VIPAS39-204ENST00000553576 SUCLG2Q96I99 432 aa7.34□□□□□ -1.23
VIPAS39-204ENST00000553576 ESYT1Q9BSJ8 1104 aa7.34□□□□□ -1.23
VIPAS39-204ENST00000553576 CDCA7Q9BWT1 371 aaPredicted RBP7.34□□□□□ -1.23
VIPAS39-204ENST00000553576 COPRSQ9NQ92 184 aa7.34□□□□□ -1.23
VIPAS39-204ENST00000553576 CHMP5Q9NZZ3 219 aa7.34□□□□□ -1.23
VIPAS39-204ENST00000553576 NWD2Q9ULI1 1742 aa7.34□□□□□ -1.23
VIPAS39-204ENST00000553576 NUP98P52948 1817 aa7.34□□□□□ -1.24
VIPAS39-204ENST00000553576 PHLPP1O60346 1717 aa7.33□□□□□ -1.24
VIPAS39-204ENST00000553576 NRAPQ86VF7 1730 aa7.33□□□□□ -1.24
VIPAS39-204ENST00000553576 GLRX3O76003 335 aaKnown RBP7.33□□□□□ -1.24
VIPAS39-204ENST00000553576 SASH1O94885 1247 aa7.33□□□□□ -1.24
VIPAS39-204ENST00000553576 MYL6BP14649 208 aa7.33□□□□□ -1.24
VIPAS39-204ENST00000553576 RFX5P48382 616 aaPredicted RBP7.33□□□□□ -1.24
VIPAS39-204ENST00000553576 GSK3AP49840 483 aa7.33□□□□□ -1.24
VIPAS39-204ENST00000553576 KCNMA1Q12791 1236 aa7.33□□□□□ -1.24
VIPAS39-204ENST00000553576 G3BP1Q13283 466 aaKnown RBP eCLIP7.33□□□□□ -1.24
VIPAS39-204ENST00000553576 TICAM2Q86XR7 235 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms