RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 RSBN1LQ6PCB5 846 aaPredicted RBP23.08■■□□□ 1.29
SHMT2-206ENST00000553529 ANKRD44Q8N8A2 993 aa23.08■■□□□ 1.29
SHMT2-206ENST00000553529 DPF2Q92785 391 aa23.08■■□□□ 1.29
SHMT2-206ENST00000553529 BICC1Q9H694 974 aaKnown RBP23.08■■□□□ 1.29
SHMT2-206ENST00000553529 PGAP2Q9UHJ9 254 aa23.08■■□□□ 1.29
SHMT2-206ENST00000553529 PLIN1O60240 522 aa23.07■■□□□ 1.28
SHMT2-206ENST00000553529 KIF4BQ2VIQ3 1234 aa23.07■■□□□ 1.28
SHMT2-206ENST00000553529 KLHDC4Q8TBB5 520 aa23.07■■□□□ 1.28
SHMT2-206ENST00000553529 GMLQ99445 158 aa23.07■■□□□ 1.28
SHMT2-206ENST00000553529 TNNQ9UQP3 1299 aa23.07■■□□□ 1.28
SHMT2-206ENST00000553529 JAG2Q9Y219 1238 aa23.07■■□□□ 1.28
SHMT2-206ENST00000553529 CELF2O95319 508 aaKnown RBP23.06■■□□□ 1.28
SHMT2-206ENST00000553529 GRM1Q13255 1194 aa23.06■■□□□ 1.28
SHMT2-206ENST00000553529 UTYO14607 1347 aa23.06■■□□□ 1.28
SHMT2-206ENST00000553529 DACT2Q5SW24 774 aa23.05■■□□□ 1.28
SHMT2-206ENST00000553529 COL13A1Q5TAT6 717 aaPredicted RBP23.05■■□□□ 1.28
SHMT2-206ENST00000553529 NOB1Q9ULX3 412 aaKnown RBP23.05■■□□□ 1.28
SHMT2-206ENST00000553529 PTPRCP08575 1304 aa23.05■■□□□ 1.28
SHMT2-206ENST00000553529 USP17L3A6NCW0 530 aa23.04■■□□□ 1.28
SHMT2-206ENST00000553529 USP17L4A6NCW7 530 aa23.04■■□□□ 1.28
SHMT2-206ENST00000553529 RASSF10A6NK89 507 aa23.04■■□□□ 1.28
SHMT2-206ENST00000553529 RPS12P25398 132 aaKnown RBP23.04■■□□□ 1.28
SHMT2-206ENST00000553529 CYP4F22Q6NT55 531 aa23.04■■□□□ 1.28
SHMT2-206ENST00000553529 USP17L1Q7RTZ2 530 aa23.04■■□□□ 1.28
SHMT2-206ENST00000553529 USP44Q9H0E7 712 aa23.04■■□□□ 1.28
SHMT2-206ENST00000553529 GGA3Q9NZ52 723 aa23.04■■□□□ 1.28
SHMT2-206ENST00000553529 LEMD3Q9Y2U8 911 aa23.04■■□□□ 1.28
SHMT2-206ENST00000553529 KCNJ4P48050 445 aa23.03■■□□□ 1.28
SHMT2-206ENST00000553529 CCDC57Q2TAC2 916 aa23.03■■□□□ 1.28
SHMT2-206ENST00000553529 ZNF280AP59817 542 aaPredicted RBP23.02■■□□□ 1.28
SHMT2-206ENST00000553529 DEFB115Q30KQ5 88 aa23.02■■□□□ 1.28
SHMT2-206ENST00000553529 ALDH1L2Q3SY69 923 aa23.02■■□□□ 1.28
SHMT2-206ENST00000553529 LRRC24Q50LG9 513 aa23.02■■□□□ 1.28
SHMT2-206ENST00000553529 LDHAL6AQ6ZMR3 332 aa23.02■■□□□ 1.28
SHMT2-206ENST00000553529 PAXIP1Q6ZW49 1069 aaPredicted RBP23.02■■□□□ 1.28
SHMT2-206ENST00000553529 PODNQ7Z5L7 613 aa23.02■■□□□ 1.28
SHMT2-206ENST00000553529 ANKRD2Q9GZV1 360 aa23.02■■□□□ 1.28
SHMT2-206ENST00000553529 PCDHAC2Q9Y5I4 1007 aa23.02■■□□□ 1.28
SHMT2-206ENST00000553529 GTF2IP78347 998 aa23.01■■□□□ 1.27
SHMT2-206ENST00000553529 TAF7LQ5H9L4 462 aa23.01■■□□□ 1.27
SHMT2-206ENST00000553529 COA1Q9GZY4 146 aa23.01■■□□□ 1.27
SHMT2-206ENST00000553529 CNNM1Q9NRU3 951 aa23.01■■□□□ 1.27
SHMT2-206ENST00000553529 ZNF609O15014 1411 aa23■■□□□ 1.27
SHMT2-206ENST00000553529 AOC2O75106 756 aa23■■□□□ 1.27
SHMT2-206ENST00000553529 RARSP54136 660 aaKnown RBP23■■□□□ 1.27
SHMT2-206ENST00000553529 SCARF1Q14162 830 aa23■■□□□ 1.27
SHMT2-206ENST00000553529 ANGEL2Q5VTE6 544 aaKnown RBP23■■□□□ 1.27
SHMT2-206ENST00000553529 KRT26Q7Z3Y9 468 aa23■■□□□ 1.27
SHMT2-206ENST00000553529 CERS5Q8N5B7 392 aa23■■□□□ 1.27
SHMT2-206ENST00000553529 AGBL3Q8NEM8 1001 aa23■■□□□ 1.27
SHMT2-206ENST00000553529 ZC3H15Q8WU90 426 aaKnown RBP23■■□□□ 1.27
SHMT2-206ENST00000553529 CD209Q9NNX6 404 aa23■■□□□ 1.27
SHMT2-206ENST00000553529 TLL2Q9Y6L7 1015 aa23■■□□□ 1.27
SHMT2-206ENST00000553529 WDR33Q9C0J8 1336 aaKnown RBP23■■□□□ 1.27
SHMT2-206ENST00000553529 FOXN1O15353 648 aa22.99■■□□□ 1.27
SHMT2-206ENST00000553529 USP17L8P0C7I0 530 aa22.99■■□□□ 1.27
SHMT2-206ENST00000553529 NBPF9Q3BBW0 867 aa22.99■■□□□ 1.27
SHMT2-206ENST00000553529 RABL6Q3YEC7 729 aaPredicted RBP22.99■■□□□ 1.27
SHMT2-206ENST00000553529 PRAMEF18Q5VWM3 479 aa22.99■■□□□ 1.27
SHMT2-206ENST00000553529 CDC37L1Q7L3B6 337 aa22.99■■□□□ 1.27
SHMT2-206ENST00000553529 MYOZ2Q9NPC6 264 aa22.99■■□□□ 1.27
SHMT2-206ENST00000553529 THSD7BQ9C0I4 1608 aa22.98■■□□□ 1.27
SHMT2-206ENST00000553529 SASH1O94885 1247 aa22.98■■□□□ 1.27
SHMT2-206ENST00000553529 KIAA0825Q8IV33 1275 aa22.98■■□□□ 1.27
SHMT2-206ENST00000553529 ZIC5Q96T25 663 aa22.98■■□□□ 1.27
SHMT2-206ENST00000553529 AOX1Q06278 1338 aa22.98■■□□□ 1.27
SHMT2-206ENST00000553529 BCAR3O75815 825 aa22.97■■□□□ 1.27
SHMT2-206ENST00000553529 GYG1P46976 350 aa22.97■■□□□ 1.27
SHMT2-206ENST00000553529 HNRNPUQ00839 825 aaKnown RBP eCLIP22.97■■□□□ 1.27
SHMT2-206ENST00000553529 TTLL5Q6EMB2 1281 aa22.97■■□□□ 1.27
SHMT2-206ENST00000553529 SAPCD2Q86UD0 394 aa22.97■■□□□ 1.27
SHMT2-206ENST00000553529 CAPNS2Q96L46 248 aa22.97■■□□□ 1.27
SHMT2-206ENST00000553529 RIPOR2Q9Y4F9 1068 aa22.97■■□□□ 1.27
SHMT2-206ENST00000553529 F8W031 263 aaPredicted RBP22.96■■□□□ 1.27
SHMT2-206ENST00000553529 STRIP1Q5VSL9 837 aa22.96■■□□□ 1.27
SHMT2-206ENST00000553529 DCPSQ96C86 337 aaKnown RBP22.96■■□□□ 1.27
SHMT2-206ENST00000553529 RFX5P48382 616 aaPredicted RBP22.94■■□□□ 1.26
SHMT2-206ENST00000553529 MOB2Q70IA6 237 aa22.94■■□□□ 1.26
SHMT2-206ENST00000553529 CDCA5Q96FF9 252 aa22.94■■□□□ 1.26
SHMT2-206ENST00000553529 MEIS3Q99687 375 aa22.94■■□□□ 1.26
SHMT2-206ENST00000553529 IQSEC3Q9UPP2 1182 aaPredicted RBP22.94■■□□□ 1.26
SHMT2-206ENST00000553529 C15orf52Q6ZUT6 534 aaKnown RBP22.93■■□□□ 1.26
SHMT2-206ENST00000553529 WNT10BO00744 389 aa22.92■■□□□ 1.26
SHMT2-206ENST00000553529 GRIK5Q16478 980 aa22.92■■□□□ 1.26
SHMT2-206ENST00000553529 VGLL2Q8N8G2 317 aa22.92■■□□□ 1.26
SHMT2-206ENST00000553529 TSKSQ9UJT2 592 aa22.92■■□□□ 1.26
SHMT2-206ENST00000553529 IL1R1P14778 569 aa22.91■■□□□ 1.26
SHMT2-206ENST00000553529 WBP1LQ9NX94 342 aa22.91■■□□□ 1.26
SHMT2-206ENST00000553529 LRRFIP2Q9Y608 721 aaKnown RBP22.91■■□□□ 1.26
SHMT2-206ENST00000553529 SULF1Q8IWU6 871 aa22.9■■□□□ 1.26
SHMT2-206ENST00000553529 FAM84BQ96KN1 310 aaPredicted RBP22.9■■□□□ 1.26
SHMT2-206ENST00000553529 FZD1Q9UP38 647 aa22.9■■□□□ 1.26
SHMT2-206ENST00000553529 CT47B1P0C2W7 299 aaPredicted RBP22.89■■□□□ 1.25
SHMT2-206ENST00000553529 HUNKP57058 714 aa22.89■■□□□ 1.25
SHMT2-206ENST00000553529 METTL24Q5JXM2 366 aa22.89■■□□□ 1.25
SHMT2-206ENST00000553529 IFFO2Q5TF58 517 aa22.89■■□□□ 1.25
SHMT2-206ENST00000553529 ZNF804AQ7Z570 1209 aa22.89■■□□□ 1.25
SHMT2-206ENST00000553529 FRAT1Q92837 279 aaPredicted RBP22.89■■□□□ 1.25
SHMT2-206ENST00000553529 CLUAP1Q96AJ1 413 aa22.89■■□□□ 1.25
SHMT2-206ENST00000553529 SIL1Q9H173 461 aa22.89■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms