RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 FBXW7Q969H0 707 aa11.74□□□□□ -0.53
SYNE2-209ENST00000553308 CDC5LQ99459 802 aaKnown RBP11.74□□□□□ -0.53
SYNE2-209ENST00000553308 GPR25O00155 361 aa11.73□□□□□ -0.53
SYNE2-209ENST00000553308 WNT10BO00744 389 aa11.73□□□□□ -0.53
SYNE2-209ENST00000553308 SASH1O94885 1247 aa11.73□□□□□ -0.53
SYNE2-209ENST00000553308 MYH3P11055 1940 aa11.73□□□□□ -0.53
SYNE2-209ENST00000553308 PKN2Q16513 984 aaKnown RBP11.73□□□□□ -0.53
SYNE2-209ENST00000553308 C8orf58Q8NAV2 365 aa11.73□□□□□ -0.53
SYNE2-209ENST00000553308 GREM2Q9H772 168 aa11.73□□□□□ -0.53
SYNE2-209ENST00000553308 IFT57Q9NWB7 429 aa11.73□□□□□ -0.53
SYNE2-209ENST00000553308 MINPP1Q9UNW1 487 aa11.73□□□□□ -0.53
SYNE2-209ENST00000553308 MAP3K2Q9Y2U5 619 aa11.73□□□□□ -0.53
SYNE2-209ENST00000553308 DDX58O95786 925 aaKnown RBP11.72□□□□□ -0.53
SYNE2-209ENST00000553308 IGKV5-2P06315 115 aa11.72□□□□□ -0.53
SYNE2-209ENST00000553308 TM4SF4P48230 202 aa11.72□□□□□ -0.53
SYNE2-209ENST00000553308 CCT4P50991 539 aaKnown RBP11.72□□□□□ -0.53
SYNE2-209ENST00000553308 DDX10Q13206 875 aaKnown RBP11.72□□□□□ -0.53
SYNE2-209ENST00000553308 PRKG1Q13976 671 aa11.72□□□□□ -0.53
SYNE2-209ENST00000553308 TXNRD3Q86VQ6 643 aa11.72□□□□□ -0.53
SYNE2-209ENST00000553308 OGFOD1Q8N543 542 aa11.72□□□□□ -0.53
SYNE2-209ENST00000553308 TTLL11Q8NHH1 800 aa11.72□□□□□ -0.53
SYNE2-209ENST00000553308 R3HDMLQ9H3Y0 253 aa11.72□□□□□ -0.53
SYNE2-209ENST00000553308 BSDC1Q9NW68 430 aaPredicted RBP11.72□□□□□ -0.53
SYNE2-209ENST00000553308 MYO3BQ8WXR4 1341 aa11.71□□□□□ -0.53
SYNE2-209ENST00000553308 APAF1O14727 1248 aa11.71□□□□□ -0.53
SYNE2-209ENST00000553308 KLRK1P26718 216 aa11.71□□□□□ -0.53
SYNE2-209ENST00000553308 NF2P35240 595 aa11.71□□□□□ -0.53
SYNE2-209ENST00000553308 GNAI1P63096 354 aa11.71□□□□□ -0.53
SYNE2-209ENST00000553308 PTPN12Q05209 780 aaKnown RBP11.71□□□□□ -0.53
SYNE2-209ENST00000553308 STRIP1Q5VSL9 837 aa11.71□□□□□ -0.53
SYNE2-209ENST00000553308 FBXO46Q6PJ61 603 aaPredicted RBP11.71□□□□□ -0.53
SYNE2-209ENST00000553308 TSPYL6Q8N831 410 aa11.71□□□□□ -0.53
SYNE2-209ENST00000553308 COA1Q9GZY4 146 aa11.71□□□□□ -0.53
SYNE2-209ENST00000553308 PI4KAP2A4QPH2 592 aa11.7□□□□□ -0.54
SYNE2-209ENST00000553308 SREBF2Q12772 1141 aa11.7□□□□□ -0.54
SYNE2-209ENST00000553308 CWF19L2Q2TBE0 894 aaKnown RBP11.7□□□□□ -0.54
SYNE2-209ENST00000553308 NOM1Q5C9Z4 860 aaKnown RBP11.7□□□□□ -0.54
SYNE2-209ENST00000553308 CCDC30Q5VVM6 783 aa11.7□□□□□ -0.54
SYNE2-209ENST00000553308 KIAA0825Q8IV33 1275 aa11.7□□□□□ -0.54
SYNE2-209ENST00000553308 PI4KAP1Q8N8J0 262 aa11.7□□□□□ -0.54
SYNE2-209ENST00000553308 FZD1Q9UP38 647 aa11.7□□□□□ -0.54
SYNE2-209ENST00000553308 FKTNO75072 461 aa11.69□□□□□ -0.54
SYNE2-209ENST00000553308 CALD1Q05682 793 aaKnown RBP11.69□□□□□ -0.54
SYNE2-209ENST00000553308 SPRYD7Q5W111 196 aa11.69□□□□□ -0.54
SYNE2-209ENST00000553308 KSR2Q6VAB6 950 aa11.69□□□□□ -0.54
SYNE2-209ENST00000553308 ARMC9Q7Z3E5 817 aa11.69□□□□□ -0.54
SYNE2-209ENST00000553308 UBE3BQ7Z3V4 1068 aa11.69□□□□□ -0.54
SYNE2-209ENST00000553308 APOBEC3FQ8IUX4 373 aaKnown RBP11.69□□□□□ -0.54
SYNE2-209ENST00000553308 CFHR5Q9BXR6 569 aa11.69□□□□□ -0.54
SYNE2-209ENST00000553308 ZNF804BA4D1E1 1349 aa11.68□□□□□ -0.54
SYNE2-209ENST00000553308 SSC5DA1L4H1 1573 aa11.68□□□□□ -0.54
SYNE2-209ENST00000553308 NEURL1BA8MQ27 555 aa11.68□□□□□ -0.54
SYNE2-209ENST00000553308 LDLRAD1Q5T700 205 aa11.68□□□□□ -0.54
SYNE2-209ENST00000553308 TTLL5Q6EMB2 1281 aa11.68□□□□□ -0.54
SYNE2-209ENST00000553308 ZBED3Q96IU2 234 aaPredicted RBP11.68□□□□□ -0.54
SYNE2-209ENST00000553308 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.68□□□□□ -0.54
SYNE2-209ENST00000553308 ANGEL1Q9UNK9 670 aaKnown RBP11.68□□□□□ -0.54
SYNE2-209ENST00000553308 LEMD3Q9Y2U8 911 aa11.68□□□□□ -0.54
SYNE2-209ENST00000553308 ITGA6P23229 1130 aa11.67□□□□□ -0.54
SYNE2-209ENST00000553308 IGHMBP2P38935 993 aaKnown RBP11.67□□□□□ -0.54
SYNE2-209ENST00000553308 GTF2IP78347 998 aa11.67□□□□□ -0.54
SYNE2-209ENST00000553308 NEXNQ0ZGT2 675 aa11.67□□□□□ -0.54
SYNE2-209ENST00000553308 TSR2Q969E8 191 aaKnown RBP11.67□□□□□ -0.54
SYNE2-209ENST00000553308 PCDHAC2Q9Y5I4 1007 aa11.67□□□□□ -0.54
SYNE2-209ENST00000553308 COL1A1P02452 1464 aaPredicted RBP11.67□□□□□ -0.54
SYNE2-209ENST00000553308 H7C1W4 665 aa11.66□□□□□ -0.54
SYNE2-209ENST00000553308 SNAP23O00161 211 aa11.66□□□□□ -0.54
SYNE2-209ENST00000553308 G2E3Q7L622 706 aa11.66□□□□□ -0.54
SYNE2-209ENST00000553308 CERS5Q8N5B7 392 aa11.66□□□□□ -0.54
SYNE2-209ENST00000553308 CLMNQ96JQ2 1002 aa11.66□□□□□ -0.54
SYNE2-209ENST00000553308 DEFB129Q9H1M3 183 aa11.66□□□□□ -0.54
SYNE2-209ENST00000553308 A0A1B0GUL6 1792 aa11.66□□□□□ -0.54
SYNE2-209ENST00000553308 LAMB1P07942 1786 aa11.66□□□□□ -0.54
SYNE2-209ENST00000553308 ECM29Q5VYK3 1845 aa11.65□□□□□ -0.54
SYNE2-209ENST00000553308 MANSC4A6NHS7 340 aaPredicted RBP11.65□□□□□ -0.54
SYNE2-209ENST00000553308 ALDH1A1P00352 501 aa11.65□□□□□ -0.54
SYNE2-209ENST00000553308 KCNJ4P48050 445 aa11.65□□□□□ -0.54
SYNE2-209ENST00000553308 MMP14P50281 582 aa11.65□□□□□ -0.54
SYNE2-209ENST00000553308 CASP7P55210 303 aa11.65□□□□□ -0.54
SYNE2-209ENST00000553308 CHRNDQ07001 517 aa11.65□□□□□ -0.54
SYNE2-209ENST00000553308 DLGAP5Q15398 846 aa11.65□□□□□ -0.54
SYNE2-209ENST00000553308 OTOP1Q7RTM1 612 aa11.65□□□□□ -0.54
SYNE2-209ENST00000553308 IFNL1Q8IU54 200 aa11.65□□□□□ -0.54
SYNE2-209ENST00000553308 WNK4Q96J92 1243 aa11.65□□□□□ -0.54
SYNE2-209ENST00000553308 MPHOSPH8Q99549 860 aa11.65□□□□□ -0.54
SYNE2-209ENST00000553308 PLA2G12BQ9BX93 195 aa11.65□□□□□ -0.54
SYNE2-209ENST00000553308 STK31Q9BXU1 1019 aa11.65□□□□□ -0.54
SYNE2-209ENST00000553308 CHMP4AQ9BY43 222 aa11.65□□□□□ -0.54
SYNE2-209ENST00000553308 ANKRD2Q9GZV1 360 aa11.65□□□□□ -0.54
SYNE2-209ENST00000553308 PRKRIP1Q9H875 184 aaPredicted RBP11.65□□□□□ -0.54
SYNE2-209ENST00000553308 CD209Q9NNX6 404 aa11.65□□□□□ -0.54
SYNE2-209ENST00000553308 TRIM17Q9Y577 477 aa11.65□□□□□ -0.54
SYNE2-209ENST00000553308 AOX1Q06278 1338 aa11.64□□□□□ -0.55
SYNE2-209ENST00000553308 IRS2Q9Y4H2 1338 aa11.64□□□□□ -0.55
SYNE2-209ENST00000553308 POTEFA5A3E0 1075 aa11.64□□□□□ -0.55
SYNE2-209ENST00000553308 IGF2BP3O00425 579 aaKnown RBP eCLIP11.64□□□□□ -0.55
SYNE2-209ENST00000553308 GCKRQ14397 625 aa11.64□□□□□ -0.55
SYNE2-209ENST00000553308 MAP3K11Q16584 847 aa11.64□□□□□ -0.55
SYNE2-209ENST00000553308 SLC10A4Q96EP9 437 aa11.64□□□□□ -0.55
SYNE2-209ENST00000553308 CLRN2A0PK11 232 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms