RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 ANKRD1Q15327 319 aa6.39□□□□□ -1.39
LIMA1-212ENST00000552491 Q6ZUG5 572 aa6.39□□□□□ -1.39
LIMA1-212ENST00000552491 STOX1Q6ZVD7 989 aa6.39□□□□□ -1.39
LIMA1-212ENST00000552491 ERCC4Q92889 916 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-212ENST00000552491 CLIP2Q9UDT6 1046 aa6.39□□□□□ -1.39
LIMA1-212ENST00000552491 DBNLQ9UJU6 430 aaKnown RBP6.39□□□□□ -1.39
LIMA1-212ENST00000552491 HDAC5Q9UQL6 1122 aa6.39□□□□□ -1.39
LIMA1-212ENST00000552491 LAMA4Q16363 1823 aa6.39□□□□□ -1.39
LIMA1-212ENST00000552491 ZNF609O15014 1411 aa6.39□□□□□ -1.39
LIMA1-212ENST00000552491 SMTNL1A8MU46 457 aa6.39□□□□□ -1.39
LIMA1-212ENST00000552491 CYP21A2P08686 494 aa6.39□□□□□ -1.39
LIMA1-212ENST00000552491 RNF20Q5VTR2 975 aa6.39□□□□□ -1.39
LIMA1-212ENST00000552491 CTNNA3Q9UI47 895 aa6.39□□□□□ -1.39
LIMA1-212ENST00000552491 PHF8Q9UPP1 1060 aa6.39□□□□□ -1.39
LIMA1-212ENST00000552491 MYH15Q9Y2K3 1946 aa6.39□□□□□ -1.39
LIMA1-212ENST00000552491 CTDNEP1O95476 244 aa6.38□□□□□ -1.39
LIMA1-212ENST00000552491 CHRM1P11229 460 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-212ENST00000552491 SLC39A6Q13433 755 aa6.38□□□□□ -1.39
LIMA1-212ENST00000552491 PDAP1Q13442 181 aaKnown RBP6.38□□□□□ -1.39
LIMA1-212ENST00000552491 SNW1Q13573 536 aaKnown RBP6.38□□□□□ -1.39
LIMA1-212ENST00000552491 PLEKHO1Q53GL0 409 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-212ENST00000552491 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-212ENST00000552491 LRRC8AQ8IWT6 810 aa6.38□□□□□ -1.39
LIMA1-212ENST00000552491 NEK1Q96PY6 1258 aa6.38□□□□□ -1.39
LIMA1-212ENST00000552491 HMG20BQ9P0W2 317 aa6.38□□□□□ -1.39
LIMA1-212ENST00000552491 MRC1P22897 1456 aa6.38□□□□□ -1.39
LIMA1-212ENST00000552491 SIPA1L3O60292 1781 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-212ENST00000552491 NEURL1BA8MQ27 555 aa6.38□□□□□ -1.39
LIMA1-212ENST00000552491 RFX5P48382 616 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-212ENST00000552491 PIP4K2AP48426 406 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-212ENST00000552491 TPD52L1Q16890 204 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-212ENST00000552491 ZNF687Q8N1G0 1237 aa6.38□□□□□ -1.39
LIMA1-212ENST00000552491 SMARCC2Q8TAQ2 1214 aa6.38□□□□□ -1.39
LIMA1-212ENST00000552491 DDX21Q9NR30 783 aaKnown RBP eCLIP6.38□□□□□ -1.39
LIMA1-212ENST00000552491 MYL6BP14649 208 aa6.37□□□□□ -1.39
LIMA1-212ENST00000552491 PTPN12Q05209 780 aaKnown RBP6.37□□□□□ -1.39
LIMA1-212ENST00000552491 TFCP2Q12800 502 aa6.37□□□□□ -1.39
LIMA1-212ENST00000552491 GCKRQ14397 625 aa6.37□□□□□ -1.39
LIMA1-212ENST00000552491 DHX40Q8IX18 779 aaKnown RBP6.37□□□□□ -1.39
LIMA1-212ENST00000552491 NSUN7Q8NE18 718 aaKnown RBP6.37□□□□□ -1.39
LIMA1-212ENST00000552491 USP28Q96RU2 1077 aa6.37□□□□□ -1.39
LIMA1-212ENST00000552491 DBNDD2Q9BQY9 259 aa6.37□□□□□ -1.39
LIMA1-212ENST00000552491 GTPBP4Q9BZE4 634 aaKnown RBP6.37□□□□□ -1.39
LIMA1-212ENST00000552491 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.37□□□□□ -1.39
LIMA1-212ENST00000552491 V9GYY5 206 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-212ENST00000552491 C5P01031 1676 aa6.37□□□□□ -1.39
LIMA1-212ENST00000552491 H3BQV1 296 aa6.37□□□□□ -1.39
LIMA1-212ENST00000552491 CAVIN2O95810 425 aa6.37□□□□□ -1.39
LIMA1-212ENST00000552491 HSP90B1P14625 803 aaKnown RBP6.37□□□□□ -1.39
LIMA1-212ENST00000552491 ATP5JP18859 108 aa6.37□□□□□ -1.39
LIMA1-212ENST00000552491 CDC25BP30305 580 aa6.37□□□□□ -1.39
LIMA1-212ENST00000552491 CCZ1BP86790 482 aa6.37□□□□□ -1.39
LIMA1-212ENST00000552491 CCZ1P86791 482 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-212ENST00000552491 GUCY1B3Q02153 619 aa6.37□□□□□ -1.39
LIMA1-212ENST00000552491 SYCP1Q15431 976 aa6.37□□□□□ -1.39
LIMA1-212ENST00000552491 TNNI3KQ59H18 835 aa6.37□□□□□ -1.39
LIMA1-212ENST00000552491 C1orf141Q5JVX7 400 aa6.37□□□□□ -1.39
LIMA1-212ENST00000552491 IFFO2Q5TF58 517 aa6.37□□□□□ -1.39
LIMA1-212ENST00000552491 SARM1Q6SZW1 724 aa6.37□□□□□ -1.39
LIMA1-212ENST00000552491 DDX46Q7L014 1031 aaKnown RBP6.37□□□□□ -1.39
LIMA1-212ENST00000552491 RIC3Q7Z5B4 369 aa6.37□□□□□ -1.39
LIMA1-212ENST00000552491 CCAR1Q8IX12 1150 aaKnown RBP6.37□□□□□ -1.39
LIMA1-212ENST00000552491 ENGASEQ8NFI3 743 aa6.37□□□□□ -1.39
LIMA1-212ENST00000552491 XAGE3Q8WTP9 111 aa6.37□□□□□ -1.39
LIMA1-212ENST00000552491 ZNF592Q92610 1267 aa6.37□□□□□ -1.39
LIMA1-212ENST00000552491 DNAJC2Q99543 621 aaKnown RBP6.37□□□□□ -1.39
LIMA1-212ENST00000552491 MYD88Q99836 296 aa6.37□□□□□ -1.39
LIMA1-212ENST00000552491 NCOA5Q9HCD5 579 aaKnown RBP6.37□□□□□ -1.39
LIMA1-212ENST00000552491 RCOR1Q9UKL0 485 aa6.37□□□□□ -1.39
LIMA1-212ENST00000552491 AXIN2Q9Y2T1 843 aa6.37□□□□□ -1.39
LIMA1-212ENST00000552491 CCDC9Q9Y3X0 531 aaKnown RBP6.37□□□□□ -1.39
LIMA1-212ENST00000552491 FPGT-TNNI3KV9GXZ4 949 aa6.37□□□□□ -1.39
LIMA1-212ENST00000552491 RBM6P78332 1123 aaKnown RBP6.36□□□□□ -1.39
LIMA1-212ENST00000552491 CCT2P78371 535 aaKnown RBP6.36□□□□□ -1.39
LIMA1-212ENST00000552491 APOBRQ0VD83 1088 aa6.36□□□□□ -1.39
LIMA1-212ENST00000552491 CEP135Q66GS9 1140 aa6.36□□□□□ -1.39
LIMA1-212ENST00000552491 NYAP1Q6ZVC0 841 aa6.36□□□□□ -1.39
LIMA1-212ENST00000552491 COPS6Q7L5N1 327 aa6.36□□□□□ -1.39
LIMA1-212ENST00000552491 FILIP1Q7Z7B0 1213 aa6.36□□□□□ -1.39
LIMA1-212ENST00000552491 CCDC112Q8NEF3 446 aa6.36□□□□□ -1.39
LIMA1-212ENST00000552491 FBXW7Q969H0 707 aa6.36□□□□□ -1.39
LIMA1-212ENST00000552491 COPRSQ9NQ92 184 aa6.36□□□□□ -1.39
LIMA1-212ENST00000552491 TRMT1Q9NXH9 659 aaKnown RBP6.36□□□□□ -1.39
LIMA1-212ENST00000552491 ZNF215Q9UL58 517 aaPredicted RBP6.36□□□□□ -1.39
LIMA1-212ENST00000552491 NCAPD2Q15021 1401 aa6.36□□□□□ -1.39
LIMA1-212ENST00000552491 CCDC69A6NI79 296 aa6.36□□□□□ -1.39
LIMA1-212ENST00000552491 RIMBP2O15034 1052 aa6.36□□□□□ -1.39
LIMA1-212ENST00000552491 PFKFB2O60825 505 aa6.36□□□□□ -1.39
LIMA1-212ENST00000552491 DDX58O95786 925 aaKnown RBP6.36□□□□□ -1.39
LIMA1-212ENST00000552491 SKILP12757 684 aa6.36□□□□□ -1.39
LIMA1-212ENST00000552491 KRT32Q14532 448 aa6.36□□□□□ -1.39
LIMA1-212ENST00000552491 AMOTQ4VCS5 1084 aa6.36□□□□□ -1.39
LIMA1-212ENST00000552491 LRP10Q7Z4F1 713 aa6.36□□□□□ -1.39
LIMA1-212ENST00000552491 ARHGEF25Q86VW2 580 aa6.36□□□□□ -1.39
LIMA1-212ENST00000552491 ANKRD24Q8TF21 1146 aa6.36□□□□□ -1.39
LIMA1-212ENST00000552491 MRFAP1L1Q96HT8 127 aa6.36□□□□□ -1.39
LIMA1-212ENST00000552491 FEZ1Q99689 392 aa6.36□□□□□ -1.39
LIMA1-212ENST00000552491 ZSCAN16Q9H4T2 348 aaPredicted RBP6.36□□□□□ -1.39
LIMA1-212ENST00000552491 OGFRQ9NZT2 677 aa6.36□□□□□ -1.39
LIMA1-212ENST00000552491 DDX41Q9UJV9 622 aaKnown RBP6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms